Mir135b (microRNA 135b) - Rat Genome Database
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Gene: Mir135b (microRNA 135b) Mus musculus
Analyze
Symbol: Mir135b
Name: microRNA 135b
RGD ID: 1608233
MGI Page MGI
Description: Is expressed in lung. Orthologous to human MIR135B (microRNA 135b).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-135b; Mirn1; Mirn135b
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391132,125,826 - 132,125,922 (+)NCBIGRCm39mm39
GRCm39 Ensembl1132,125,826 - 132,125,922 (+)Ensembl
GRCm381132,198,088 - 132,198,184 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,198,088 - 132,198,184 (+)EnsemblGRCm38mm10GRCm38
MGSCv371134,094,665 - 134,094,761 (+)NCBIGRCm37mm9NCBIm37
Celera1134,805,071 - 134,805,167 (+)NCBICelera
Cytogenetic Map1E4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:17369397   PMID:17604727   PMID:18452032   PMID:19559694   PMID:20215419   PMID:20413612   PMID:21037258   PMID:21267068   PMID:21822254   PMID:22000014   PMID:22570807  
PMID:23340180   PMID:23623609   PMID:24348261   PMID:24735923   PMID:26134897   PMID:27048518   PMID:30037628   PMID:30508510   PMID:30578296   PMID:31444954  


Genomics

Comparative Map Data
Mir135b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391132,125,826 - 132,125,922 (+)NCBIGRCm39mm39
GRCm39 Ensembl1132,125,826 - 132,125,922 (+)Ensembl
GRCm381132,198,088 - 132,198,184 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,198,088 - 132,198,184 (+)EnsemblGRCm38mm10GRCm38
MGSCv371134,094,665 - 134,094,761 (+)NCBIGRCm37mm9NCBIm37
Celera1134,805,071 - 134,805,167 (+)NCBICelera
Cytogenetic Map1E4NCBI
MIR135B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1205,448,302 - 205,448,398 (-)EnsemblGRCh38hg38GRCh38
GRCh381205,448,302 - 205,448,398 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371205,417,430 - 205,417,526 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361203,684,052 - 203,684,148 (-)NCBINCBI36hg18NCBI36
Celera1178,552,602 - 178,552,698 (-)NCBI
Cytogenetic Map1q32.1NCBI
HuRef1176,582,827 - 176,582,923 (-)NCBIHuRef
CHM1_11206,840,703 - 206,840,799 (-)NCBICHM1_1
Mir135b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21343,638,857 - 43,638,953 (+)NCBI
Rnor_6.0 Ensembl1348,976,986 - 48,977,082 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01348,976,986 - 48,977,082 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01354,046,530 - 54,046,626 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1343,975,159 - 43,975,255 (+)NCBICelera
Cytogenetic Map13q13NCBI
MIR135B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl381,926,558 - 1,926,646 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1381,926,558 - 1,926,646 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13000000185000000Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134721057150318120Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134721057150318120Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134721057150318120Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145744740189571420Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52418578182423027Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163815531189571420Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163880843153681816Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173716016147249632Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74477076148839837Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174952818133363199Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)176000000148900000Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)176000000181500000Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782314261147249632Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182665468135687641Mouse
27095913Scvln2_msacral vertebrae length 2, 5 week (mouse)194200000148900000Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194200000172200000Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195600000162200000Mouse
1301536Pbbcp1_mperipheral blood B cell percentage 1 (mouse)Not determined199579930133580115Mouse
1301193Lxw3_mlupus BXSB x NZW 3 (mouse)Not determined1103040804137040937Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1104005680191493284Mouse
12790994Aaaq1_maortic arch angle QTL 1 (mouse)1109568206143568206Mouse
1301979Melm1_mmelanoma modifier 1 (mouse)Not determined1109710525143710742Mouse
1357600Obq17_mobesity QTL 17 (mouse)Not determined1110625442144625561Mouse
10401248Bglu12_mblood glucose level 12 (mouse)Not determined1110625442144625561Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112081092168358833Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112081092175641372Mouse
1301249Sbw1_msplenomegaly-NZB x NZW 1 (mouse)Not determined1112203268146203348Mouse
10045640Jckm4_mjuvenile cystic kidney modifier 4 (mouse)Not determined1116363098150363199Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117600000180000000Mouse
1302161Exq2_mexploratory and excitability QTL 2 (mouse)Not determined1118171982152172078Mouse
27226714Metcl1_mmetatarsal-calcaneal length 1, 5 week (mouse)1121800000139800000Mouse
27226740Metcl13_mmetatarsal-calcaneal length 13, 16 week (mouse)1121800000153900000Mouse
27226743Metcl7_mmetatarsal-calcaneal length 7, 10 week (mouse)1121800000154000000Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121800000165000000Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122100000165000000Mouse
12880408V125Dq3_mvitamin D active form serum level QTL 3 (mouse)1123000000157000000Mouse
1301488Tir3b_mtrypansomiasis infection response 3b (mouse)Not determined1128551097157361794Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128800000181500000Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129255120163255255Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131228571165311895Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Il1r1mmu-miR-135b-5pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI23440414
Ptk2mmu-miR-135b-5pOncomiRDBexternal_infoNANA23438844
Foxo1mmu-miR-135b-5pOncomiRDBexternal_infoNANA22042699
Cyp1a2mmu-miR-135b-5pOncomiRDBexternal_infoNANA18632633
Psip1mmu-miR-135b-3pMirecordsexternal_infoNANA21483685

Predicted Targets
Summary Value
Count of predictions:24364
Count of gene targets:10473
Count of transcripts:17500
Interacting mature miRNAs:mmu-miR-135b-3p, mmu-miR-135b-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083501
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1132,198,088 - 132,198,184 (+)Ensembl
RefSeq Acc Id: NR_029777
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,125,826 - 132,125,922 (+)NCBI
GRCm381132,198,088 - 132,198,184 (+)ENTREZGENE
MGSCv371134,094,665 - 134,094,761 (+)RGD
Celera1134,805,071 - 134,805,167 (+)RGD
cM Map1 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3618732 AgrOrtholog
Ensembl Genes ENSMUSG00000065435 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083501 ENTREZGENE
MGD MGI:3618732 ENTREZGENE
miRBase MI0000646 ENTREZGENE
NCBI Gene 723818 ENTREZGENE
PhenoGen Mir135b PhenoGen
RNAcentral URS000001C659 RNACentral
  URS0000488C83 RNACentral
  URS000075CCA1 RNACentral