Mir103-2 (microRNA 103-2) - Rat Genome Database

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Gene: Mir103-2 (microRNA 103-2) Mus musculus
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Symbol: Mir103-2
Name: microRNA 103-2
RGD ID: 1608226
MGI Page MGI
Description: Acts upstream of or within several processes, including cellular response to amino acid stimulus; cellular response to cytokine stimulus; and positive regulation of adipose tissue development. Is expressed in several structures, including branchial arch; central nervous system; inner ear; limb bud; and somite. Orthologous to human MIR103A2 (microRNA 103a-2).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-103; mir-103-2; Mirn10; Mirn103-2
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392131,129,972 - 131,130,057 (+)NCBIGRCm39mm39
GRCm39 Ensembl2131,129,972 - 131,130,057 (+)Ensembl
GRCm382131,288,052 - 131,288,137 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2131,288,052 - 131,288,137 (+)EnsemblGRCm38mm10GRCm38
MGSCv372131,113,788 - 131,113,873 (+)NCBIGRCm37mm9NCBIm37
Celera2132,514,231 - 132,514,316 (+)NCBICelera
Cytogenetic Map2F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11914277   PMID:12554860   PMID:16381832   PMID:16766679   PMID:16882971   PMID:17369397   PMID:17604727   PMID:18282110   PMID:18452032   PMID:19188425   PMID:19559694   PMID:20215419  
PMID:20223197   PMID:20413612   PMID:20439489   PMID:20548288   PMID:20558326   PMID:20603000   PMID:20668074   PMID:20886090   PMID:21037258   PMID:21267068   PMID:23622242   PMID:23940725  
PMID:23946534   PMID:24205035   PMID:24427314   PMID:25400071   PMID:26837267   PMID:31086184   PMID:32035613  


Genomics

Comparative Map Data
Mir103-2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392131,129,972 - 131,130,057 (+)NCBIGRCm39mm39
GRCm39 Ensembl2131,129,972 - 131,130,057 (+)Ensembl
GRCm382131,288,052 - 131,288,137 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2131,288,052 - 131,288,137 (+)EnsemblGRCm38mm10GRCm38
MGSCv372131,113,788 - 131,113,873 (+)NCBIGRCm37mm9NCBIm37
Celera2132,514,231 - 132,514,316 (+)NCBICelera
Cytogenetic Map2F1NCBI
MIR103A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl203,917,494 - 3,917,571 (+)EnsemblGRCh38hg38GRCh38
GRCh38203,917,494 - 3,917,571 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37203,898,141 - 3,898,218 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36203,846,140 - 3,846,217 (+)NCBINCBI36hg18NCBI36
Celera203,960,014 - 3,960,091 (+)NCBI
Cytogenetic Map20p13NCBI
HuRef203,846,794 - 3,846,871 (+)NCBIHuRef
CHM1_1203,898,136 - 3,898,213 (+)NCBICHM1_1
Mir103a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23118,510,194 - 118,510,279 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl3118,510,194 - 118,510,279 (+)Ensembl
Rnor_6.03123,833,671 - 123,833,756 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3123,833,671 - 123,833,756 (+)EnsemblRnor6.0rn6Rnor6.0
Celera3117,318,107 - 117,318,192 (+)NCBICelera
Cytogenetic Map3q36NCBI
MIR103-2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12417,468,354 - 17,468,430 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2417,468,355 - 17,468,434 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2417,298,078 - 17,298,154 (-)NCBI
ROS_Cfam_1.02417,886,699 - 17,886,775 (-)NCBI
UMICH_Zoey_3.12417,481,690 - 17,481,766 (-)NCBI
UNSW_CanFamBas_1.02417,594,068 - 17,594,144 (-)NCBI
UU_Cfam_GSD_1.02417,920,861 - 17,920,937 (-)NCBI
MIR103-2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1731,808,836 - 31,808,920 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11731,808,837 - 31,808,916 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21736,149,787 - 36,149,866 (-)NCBISscrofa10.2Sscrofa10.2susScr3


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224334620148858457Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229417935148533014Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245457623145470727Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)262000000137000000Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265439402162677006Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284182854148680255Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284182854148825550Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285893925181254801Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294400000154400000Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297292889131293051Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297292889131293051Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297379883131379883Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297379883131379883Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100993579134993788Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2101112449135112609Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2101112449135112609Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2101112449135112609Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102800000160100000Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103265371167370436Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106391660140391809Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107413756141413756Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110647738144647887Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2111085773154512747Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111331784145331901Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111331784145331901Mouse
1301905Lgth2_mbody length 2 (mouse)Not determined2111331784145331901Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111331784145331901Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111709108145709243Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111781466145781606Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112370826146371085Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112370826146371085Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112370826146371085Mouse
1301029T2dm3_mtype 2 diabetes mellitus 3 (mouse)Not determined2114457594132872237Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115370937149371074Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115370937149371074Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116235703150235821Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116464410150464554Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2118112449174483070Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118758772160769245Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118758772160769245Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118758772160769245Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118758772160769245Mouse
1300712El2_mepilepsy 2 (mouse)Not determined2122376665142690215Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2123041095157041211Mouse
1301066Otx2m2_morthodenticle homolog 2 (Drosophila) modifier 2 (mouse)Not determined2123390053148858457Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2124095391158095504Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124600000168400000Mouse
13506763Tbvq1_mtrabecular bone volume QTL 1 (mouse)2126200000135600000Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127822099161822198Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127822099161822198Mouse
1558989Gnf4_mgrowth and fatness 4 (mouse)Not determined2128331784132872237Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129500000163500000Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Gpd1mmu-miR-103-3pMirtarbaseexternal_infoReporter assayNon-Functional MTI15131085
Nf1mmu-miR-103-3pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI23056445
Gpd1mmu-miR-103-3pTarbaseexternal_infoReporter GeneNEGATIVE

Predicted Targets
Summary Value
Count of predictions:32752
Count of gene targets:11692
Count of transcripts:20611
Interacting mature miRNAs:mmu-miR-103-2-5p, mmu-miR-103-3p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083629
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2131,129,972 - 131,130,057 (+)Ensembl
GRCm38.p6 Ensembl2131,288,052 - 131,288,137 (+)Ensembl
RefSeq Acc Id: NR_029755
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392131,129,972 - 131,130,057 (+)NCBI
GRCm382131,288,052 - 131,288,137 (+)ENTREZGENE
MGSCv372131,113,788 - 131,113,873 (+)RGD
Celera2132,514,231 - 132,514,316 (+)RGD
cM Map2 ENTREZGENE
Sequence:
Promoters
RGD ID:6878808
Promoter ID:EPDNEW_M2855
Type:single initiation site
Name:Mir103-2_1
Description:Mus musculus microRNA 103-2 (Mir103-2), microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382131,288,127 - 131,288,187EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3619059 AgrOrtholog
Ensembl Genes ENSMUSG00000065563 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083629 ENTREZGENE
MGD MGI:3619059 ENTREZGENE
miRBase MI0000588 ENTREZGENE
NCBI Gene 723825 ENTREZGENE
PhenoGen Mir103-2 PhenoGen
RNAcentral URS0000476BE1 RNACentral
  URS000060A0B0 RNACentral
  URS000075AC7F RNACentral