Mir346 (microRNA 346) - Rat Genome Database

Name: Mir346
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Mir346 (microRNA 346) Mus musculus

Analyze

Symbol:

Mir346

Name:

microRNA 346

RGD ID:

1608207

MGI Page

MGI

Description:

Is expressed in frontal bone; gut; pancreas; and parietal bone. Orthologous to human MIR346 (microRNA 346).

Type:

ncrna

RefSeq Status:

PROVISIONAL

Also known as:

mir-346; Mirn; Mirn346; mmu-mir-3; mmu-mir-346

RGD Orthologs

Human

Rat

Dog

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	34,616,566 - 34,616,663 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	14	34,616,566 - 34,616,663 (+)	Ensembl
GRCm38	14	34,894,609 - 34,894,706 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	34,894,609 - 34,894,706 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	35,707,795 - 35,707,892 (+)	NCBI	GRCm37		mm9	NCBIm37
Celera	14	31,153,100 - 31,153,197 (+)	NCBI		Celera
Cytogenetic Map	14	B	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adult respiratory distress syndrome (ISO)

Disease Progression (ISO)

lung non-small cell carcinoma (ISO)

Myocardial Reperfusion Injury (ISO)

Neoplasm Invasiveness (ISO)

Neoplasm Metastasis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (EXP,ISO)

cadmium atom (EXP)

cadmium dichloride (EXP)

choline (EXP)

folic acid (EXP)

L-methionine (EXP)

progesterone (ISO)

tetrachloromethane (ISO)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to amino acid stimulus (IDA)

References

References - curated


1.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:14691248	PMID:16381832	PMID:17369397	PMID:17936263	PMID:19727952	PMID:19780716	PMID:20215419	PMID:20413612	PMID:20548288	PMID:21037258	PMID:21267068	PMID:21822254
PMID:25661065	PMID:31397024

Genomics

Comparative Map Data

Mir346
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	34,616,566 - 34,616,663 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	14	34,616,566 - 34,616,663 (+)	Ensembl
GRCm38	14	34,894,609 - 34,894,706 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	34,894,609 - 34,894,706 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	35,707,795 - 35,707,892 (+)	NCBI	GRCm37		mm9	NCBIm37
Celera	14	31,153,100 - 31,153,197 (+)	NCBI		Celera
Cytogenetic Map	14	B	NCBI

MIR346
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	10	86,264,694 - 86,264,788 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	10	86,264,694 - 86,264,788 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	10	88,024,451 - 88,024,545 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	88,014,430 - 88,014,524 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	10	82,019,715 - 82,019,809 (-)	NCBI
Cytogenetic Map	10	q23.2	NCBI
HuRef	10	81,873,792 - 81,873,886 (-)	NCBI		HuRef
CHM1_1	10	88,306,192 - 88,306,286 (-)	NCBI		CHM1_1

Mir346
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	16	10,218,118 - 10,218,215 (+)	NCBI
Rnor_6.0 Ensembl	16	11,250,054 - 11,250,151 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	16	11,250,054 - 11,250,151 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	16	9,574,933 - 9,575,030 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	16	5,002,049 - 5,002,146 (-)	NCBI		Celera
Cytogenetic Map	16	p15	NCBI

MIR346
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	4	34,073,335 - 34,073,429 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	4	34,073,335 - 34,073,429 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301991	Wta3_m	weight adult 3 (mouse)			Not determined		14	3837405	37837582	Mouse
4141550	Dbm3_m	diabetes modifier 3 (mouse)			Not determined			5093405	39093528	Mouse
27226748	Femd8_m	femur midshaft diameter 8, 10 week (mouse)					14	8700000	46500000	Mouse
27226752	Femd4_m	femur midshaft diameter 4, 5 week (mouse)					14	8700000	47000000	Mouse
1300779	Dyscalc4_m	dystrophic cardiac calcinosis 4 (mouse)			Not determined		14	12490914	46491050	Mouse
4141864	Mrdq4_m	modifier of retinal degeneration QTL 4 (mouse)			Not determined			12546018	48527625	Mouse
1300544	Hypn_m	hyperinsulinemia (mouse)			Not determined		14	15438659	49438808	Mouse
1301372	Sluc13_m	susceptibility to lung cancer 13 (mouse)			Not determined		14	19105647	53105769	Mouse
1357589	Kdnw2_m	kidney weight 2 (mouse)			Not determined		14	20837405	121032392	Mouse
1357527	Epfpq1_m	epididymal fat percentage QTL 1 (mouse)			Not determined		14	21012382	71648361	Mouse
14746973	Manh76_m	mandible shape 76 (mouse)					14	22565260	56565260	Mouse
4142485	Modor2_m	modifier of ocular retardation 2 (mouse)			Not determined		14	24925824	57942312	Mouse
13506929	Recrq10_m	recombination rate in male meiosis QTL 10 (mouse)					14	28200000	60900000	Mouse
10043886	Cia49_m	collagen induced arthritis QTL 49 (mouse)			Not determined		14	29759537	63759676	Mouse
1300998	Cia17_m	collagen induced arthritis 17 (mouse)			Not determined		14	30097793	64097924	Mouse
1300909	Ath13_m	atherosclerosis 13 (mouse)			Not determined		14	30097793	64097924	Mouse
27226775	Tibl7_m	tibia length 7, 5 week (mouse)					14	30600000	48600000	Mouse
27226744	Metcl6_m	metatarsal-calcaneal length 6, 5 week (mouse)					14	30600000	52700000	Mouse
27226774	Tibl15_m	tibia length 15, 10 week (mouse)					14	30600000	87700000	Mouse
27226737	Metcl12_m	metatarsal-calcaneal length 12, 10 week (mouse)					14	33500000	59200000	Mouse
14696688	Rfq2_m	rearing frequency QTL 2, males (mouse)					14	34000000	36000000	Mouse
27226727	Tibl21_m	tibia length 21, 16 week (mouse)					14	34400000	52700000	Mouse

miRNA Target Status

Confirmed Targets

Gene Target	Mature miRNA	Method Name	Result Type	Data Type	Support Type	PMID
Nrip1	mmu-miR-346-5p	Mirtarbase	external_info	Immunoblot//LacZ reporter assay//Quantitative prot	Functional MTI	19780716
Nrip1	mmu-miR-346-3p	Mirecords	external_info	{unchanged}	NA	19780716

Predicted Targets

	Summary Value
Count of predictions:	55697
Count of gene targets:	18164
Count of transcripts:	36814
Interacting mature miRNAs:	mmu-miR-346-3p, mmu-miR-346-5p
Prediction methods:	Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_029774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC154388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CT030647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	LM608603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000083547

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	14	34,894,609 - 34,894,706 (+)	Ensembl

RefSeq Acc Id:

NR_029774

RefSeq Status:

PROVISIONAL

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	34,616,566 - 34,616,663 (+)	NCBI
GRCm38	14	34,894,609 - 34,894,706 (+)	ENTREZGENE
MGSCv37	14	35,707,795 - 35,707,892 (+)	RGD
Celera	14	31,153,100 - 31,153,197 (+)	RGD
cM Map	14		ENTREZGENE

Sequence:

show sequence

TCTGTGTTGGGCGTCTGTCTGCCCGAGTGCCTGCCTCTCTGTTGCTCTGAAGGAGGCAGGGGCT
GGGCCTGCAGCTGCCTGGGCAGAGCTGCTCCTTC

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:3619362	AgrOrtholog
Ensembl Genes	ENSMUSG00000065481	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000083547	ENTREZGENE
MGD	MGI:3619362	ENTREZGENE
miRBase	MI0000634	ENTREZGENE
NCBI Gene	723847	ENTREZGENE
PhenoGen	Mir346	PhenoGen
RNAcentral	URS00002FAF0F	RNACentral
	URS00004BDA6B	RNACentral
	URS00006D2133	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD