Mir362 (microRNA 362) - Rat Genome Database

Name: Mir362
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| FTP Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Mir362 (microRNA 362) Mus musculus

Analyze

Symbol:

Mir362

Name:

microRNA 362

RGD ID:

1608203

MGI Page

MGI

Description:

Orthologous to human MIR362 (microRNA 362).

Type:

ncrna

RefSeq Status:

PROVISIONAL

Also known as:

mir-362; Mirn; Mirn362; mmu-mir-3; mmu-mir-362

RGD Orthologs

Human

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	7,108,221 - 7,108,285 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	X	7,108,221 - 7,108,285 (-)	Ensembl
GRCm38	X	7,241,982 - 7,242,046 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	7,241,982 - 7,242,046 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	6,819,108 - 6,819,172 (-)	NCBI	GRCm37		mm9	NCBIm37
Celera	X	4,229,792 - 4,229,856 (+)	NCBI		Celera
Cytogenetic Map	X	A1.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

bronchiolo-alveolar adenocarcinoma (ISO)

Chemical and Drug Induced Liver Injury (ISO)

Dent Disease 1 (ISO)

Myocardial Reperfusion Injury (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3-methylcholanthrene (EXP)

all-trans-retinoic acid (ISO)

cadmium dichloride (ISO)

doxorubicin (ISO)

ethanol (EXP)

formaldehyde (ISO)

hydrogen peroxide (ISO)

methamidophos (ISO)

methimazole (EXP)

mono(2-ethylhexyl) phthalate (EXP)

paracetamol (ISO)

quercetin (ISO)

resveratrol (ISO)

rifampicin (ISO)

S-butyl-DL-homocysteine (S,R)-sulfoximine (EXP)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (EXP)

sodium fluoride (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to ethanol (IEP)

cellular response to leukemia inhibitory factor (IEP)

Cellular Component

RISC complex (IDA)

References

Additional References at PubMed

PMID:16274478	PMID:16381832	PMID:16582102	PMID:17604727	PMID:19091803	PMID:20215419	PMID:20413612	PMID:20439489	PMID:20558326	PMID:20589883	PMID:21037258	PMID:21267068
PMID:21822254	PMID:23185045	PMID:26107383	PMID:30679521

Genomics

Comparative Map Data

Mir362
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	7,108,221 - 7,108,285 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	X	7,108,221 - 7,108,285 (-)	Ensembl
GRCm38	X	7,241,982 - 7,242,046 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	7,241,982 - 7,242,046 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	6,819,108 - 6,819,172 (-)	NCBI	GRCm37		mm9	NCBIm37
Celera	X	4,229,792 - 4,229,856 (+)	NCBI		Celera
Cytogenetic Map	X	A1.1	NCBI

MIR362
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	X	50,008,964 - 50,009,028 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	X	50,008,964 - 50,009,028 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	X	49,773,572 - 49,773,636 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	49,660,311 - 49,660,375 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	X	53,842,799 - 53,842,863 (+)	NCBI
Cytogenetic Map	X	p11.23	NCBI
HuRef	X	47,243,523 - 47,243,587 (+)	NCBI		HuRef
CHM1_1	X	49,853,358 - 49,853,422 (+)	NCBI		CHM1_1

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1302195	Pbwg10_m	postnatal body weight growth 10 (mouse)			Not determined		X	1	26335934	Mouse

miRNA Target Status

Confirmed Targets

Gene Target	Mature miRNA	Method Name	Result Type	Data Type	Support Type	PMID
E2f1	mmu-miR-362-3p	OncomiRDB	external_info	NA	NA	23280316
F2r	mmu-miR-362-5p	Mirtarbase	external_info	Sequencing	Functional MTI (Weak)	19536157
Pofut1	mmu-miR-362-5p	Tarbase	external_info	Sequencing	POSITIVE

Predicted Targets

	Summary Value
Count of predictions:	20414
Count of gene targets:	9340
Count of transcripts:	15145
Interacting mature miRNAs:	mmu-miR-362-3p, mmu-miR-362-5p
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_029851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AL663104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	LM608687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000093592

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	X	7,241,982 - 7,242,046 (-)	Ensembl

RefSeq Acc Id:

NR_029851

RefSeq Status:

PROVISIONAL

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	X	7,108,221 - 7,108,285 (-)	NCBI
GRCm38	X	7,241,982 - 7,242,046 (-)	ENTREZGENE
MGSCv37	X	6,819,108 - 6,819,172 (-)	RGD
Celera	X	4,229,792 - 4,229,856 (+)	RGD
cM Map	X		ENTREZGENE

Sequence:

show sequence

CTCGAATCCTTGGAACCTAGGTGTGAATGCTGCTTCAGTGCAACACACCTGTTCAAGGATTCAA
A

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:3619369	AgrOrtholog
Ensembl Genes	ENSMUSG00000070100	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000093592	ENTREZGENE
MGD	MGI:3619369	ENTREZGENE
miRBase	MI0000763	ENTREZGENE
NCBI Gene	723851	ENTREZGENE
PhenoGen	Mir362	PhenoGen
RNAcentral	URS000027FB0A	RNACentral
	URS000038A4CD	RNACentral
	URS000075A1D8	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD