Mir429 (microRNA 429) - Rat Genome Database
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Gene: Mir429 (microRNA 429) Mus musculus
Analyze
Symbol: Mir429
Name: microRNA 429
RGD ID: 1608189
MGI Page MGI
Description: Is expressed in metanephros; olfactory epithelium; and vomeronasal organ. Orthologous to human MIR429 (microRNA 429).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-429; Mirn; Mirn429; mmu-mir-4; mmu-mir-429
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394156,138,362 - 156,138,444 (-)NCBIGRCm39mm39
GRCm39 Ensembl4156,138,362 - 156,138,444 (-)Ensembl
GRCm384156,053,905 - 156,053,987 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4156,053,905 - 156,053,987 (-)EnsemblGRCm38mm10GRCm38
MGSCv374155,428,014 - 155,428,096 (-)NCBIGRCm37mm9NCBIm37
Celera4158,316,301 - 158,316,383 (-)NCBICelera
Cytogenetic Map4E2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
1. RGD automated import pipeline
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15735639   PMID:16381832   PMID:17369397   PMID:17604727   PMID:18184563   PMID:18829540   PMID:20016822   PMID:20215419   PMID:20413612   PMID:20548288   PMID:21037258   PMID:21079000  
PMID:21267068   PMID:21518438   PMID:23138483   PMID:23646144   PMID:23765281   PMID:24631216   PMID:25152461   PMID:25609238   PMID:25937343   PMID:26489013   PMID:26818658   PMID:27299781  
PMID:27576955   PMID:27655719   PMID:28941704   PMID:29449309   PMID:29602800   PMID:29624520   PMID:30334065   PMID:30578296   PMID:31185248   PMID:31837322   PMID:32005677  


Genomics

Comparative Map Data
Mir429
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394156,138,362 - 156,138,444 (-)NCBIGRCm39mm39
GRCm39 Ensembl4156,138,362 - 156,138,444 (-)Ensembl
GRCm384156,053,905 - 156,053,987 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4156,053,905 - 156,053,987 (-)EnsemblGRCm38mm10GRCm38
MGSCv374155,428,014 - 155,428,096 (-)NCBIGRCm37mm9NCBIm37
Celera4158,316,301 - 158,316,383 (-)NCBICelera
Cytogenetic Map4E2NCBI
MIR429
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11,169,005 - 1,169,087 (+)EnsemblGRCh38hg38GRCh38
GRCh3811,169,005 - 1,169,087 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711,104,385 - 1,104,467 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,094,247 - 1,094,329 (+)NCBINCBI36hg18NCBI36
Celera11,478,391 - 1,478,473 (-)NCBI
Cytogenetic Map1p36.33NCBI
HuRef1375,766 - 375,848 (+)NCBIHuRef
CHM1_111,091,357 - 1,091,439 (+)NCBICHM1_1
Mir429
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25166,647,459 - 166,647,543 (-)NCBI
Rnor_6.0 Ensembl5173,488,331 - 173,488,415 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05173,488,331 - 173,488,415 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05176,962,353 - 176,962,437 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5164,848,262 - 164,848,346 (-)NCBICelera
Cytogenetic Map5q36NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156183778Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124826172156508116Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124893970156508116Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124893970156508116Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124893970156508116Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125504302156508116Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125504302156508116Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125504302156508116Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125562755156508116Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4128057656156508116Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4128057656156508116Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4132926037156508116Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133592276156508116Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134569994156508116Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134569994156508116Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138859268156508116Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Zeb1mmu-miR-429-3pMirtarbaseexternal_infoLuciferase reporter assay//Western blotFunctional MTI19745813
Zeb1mmu-miR-429-3pMirtarbaseexternal_infoReporter assayFunctional MTI21049046
Zeb1mmu-miR-429-3pMirtarbaseexternal_infoReporter assayNon-Functional MTI18411277
Zeb2mmu-miR-429-3pMirtarbaseexternal_infoReporter assayFunctional MTI18411277
Zeb2mmu-miR-429-3pMirtarbaseexternal_infoWestern blot//immunohistochemistry//Microarray//qRFunctional MTI19167416
Flt1mmu-miR-429-3pMirtarbaseexternal_infoLuciferase reporter assayNon-Functional MTI21115742
Zeb1mmu-miR-429-3pTarbaseexternal_infoReporter GeneNEGATIVE
Sox2mmu-miR-429-5pOncomiRDBexternal_infoNANA23111103
Mybl2mmu-miR-429-5pOncomiRDBexternal_infoNANA22101269
Bcl2mmu-miR-429-5pOncomiRDBexternal_infoNANA21993663
Nol3mmu-miR-429-5pOncomiRDBexternal_infoNANA21684154
Zeb2mmu-miR-429-3pTarbaseexternal_infoReporter GenePOSITIVE

Predicted Targets
Summary Value
Count of predictions:14827
Count of gene targets:6832
Count of transcripts:10951
Interacting mature miRNAs:mmu-miR-429-3p, mmu-miR-429-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083493
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4156,053,905 - 156,053,987 (-)Ensembl
RefSeq Acc Id: NR_029958
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394156,138,362 - 156,138,444 (-)NCBI
GRCm384156,053,905 - 156,053,987 (-)ENTREZGENE
MGSCv374155,428,014 - 155,428,096 (-)RGD
Celera4158,316,301 - 158,316,383 (-)RGD
cM Map4 ENTREZGENE
Sequence:
Promoters
RGD ID:6885860
Promoter ID:EPDNEW_M6381
Type:single initiation site
Name:Mir429_1
Description:Mus musculus microRNA 429 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384156,053,914 - 156,053,974EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3619402 AgrOrtholog
Ensembl Genes ENSMUSG00000065427 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083493 ENTREZGENE
MGD MGI:3619402 ENTREZGENE
miRBase MI0001642 ENTREZGENE
NCBI Gene 723865 ENTREZGENE
PhenoGen Mir429 PhenoGen
RNAcentral URS00001BB658 RNACentral
  URS00002D8367 RNACentral
  URS000075AE5E RNACentral