Mir485 (microRNA 485) - Rat Genome Database
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Gene: Mir485 (microRNA 485) Mus musculus
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Symbol: Mir485
Name: microRNA 485
RGD ID: 1608180
MGI Page MGI
Description: Involved in cellular response to leukemia inhibitory factor. Is expressed in bone; central nervous system; dorsal root ganglion; and neural retina. Orthologous to human MIR485 (microRNA 485).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-485; Mirn; Mirn485; mmu-mir-4; mmu-mir-485
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912109,701,336 - 109,701,408 (+)NCBIGRCm39mm39
GRCm3812109,734,902 - 109,734,974 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12109,734,902 - 109,734,974 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,973,112 - 110,973,184 (+)NCBIGRCm37mm9NCBIm37
Celera12110,932,133 - 110,932,205 (+)NCBICelera
Cytogenetic Map12F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:16274478   PMID:16381832   PMID:16582102   PMID:17604727   PMID:20215419   PMID:20413612   PMID:20439489   PMID:21037258   PMID:21267068   PMID:23332760   PMID:26107383   PMID:29917178  
PMID:30463065   PMID:31877301  


Genomics

Comparative Map Data
Mir485
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912109,701,336 - 109,701,408 (+)NCBIGRCm39mm39
GRCm3812109,734,902 - 109,734,974 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12109,734,902 - 109,734,974 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,973,112 - 110,973,184 (+)NCBIGRCm37mm9NCBIm37
Celera12110,932,133 - 110,932,205 (+)NCBICelera
Cytogenetic Map12F1NCBI
MIR485
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl14101,055,419 - 101,055,491 (+)EnsemblGRCh38hg38GRCh38
GRCh3814101,055,419 - 101,055,491 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3714101,521,756 - 101,521,828 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614100,591,508 - 100,591,580 (+)NCBINCBI36hg18NCBI36
Celera1481,577,817 - 81,577,889 (+)NCBI
Cytogenetic Map14q32.31NCBI
HuRef1481,705,129 - 81,705,201 (+)NCBIHuRef
CHM1_114101,460,778 - 101,460,850 (+)NCBICHM1_1


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235235497109969809Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268300000113400000Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277545446111545446Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80909934113419913Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80909934113419913Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80909934113419913Mouse
1357701Lvrq10_mliver weight QTL 10 (mouse)Not determined1280909934113419913Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280909934113419913Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1281022884115022884Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282700137116700137Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283565816117565965Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283565816117565965Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285995320119995424Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286349301114868033Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288086615120129022Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288086615120129022Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288342095120129022Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289697812120129022Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289972772120129022Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290342009120129022Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291256256120129022Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292783591120129022Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292783591120129022Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292969663120129022Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293298027120129022Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294179630120129022Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296896717120129022Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296896717120129022Mouse
10412075Nils1_mneointima lesion size 1 (mouse)Not determined12102060930120129022Mouse
4141297Plyid_mPolymeric IgA dominance (mouse)Not determined109217459115921502Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mat1ammu-miR-485-3pOncomiRDBexternal_infoNANA23468134
Mat1ammu-miR-485-3pOncomiRDBexternal_infoNANA23241961

Predicted Targets
Summary Value
Count of predictions:33429
Count of gene targets:13914
Count of transcripts:25104
Interacting mature miRNAs:mmu-miR-485-3p, mmu-miR-485-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Rnahybrid,Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000093620
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl12109,734,902 - 109,734,974 (+)Ensembl
RefSeq Acc Id: NR_030253
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912109,701,336 - 109,701,408 (+)NCBI
GRCm3812109,734,902 - 109,734,974 (+)ENTREZGENE
MGSCv3712110,973,112 - 110,973,184 (+)RGD
Celera12110,932,133 - 110,932,205 (+)RGD
cM Map12 ENTREZGENE
Sequence:
Promoters
RGD ID:8679272
Promoter ID:EPDNEW_M17667
Type:single initiation site
Name:Mir485_1
Description:Mus musculus microRNA 485 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3812109,734,972 - 109,735,032EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3619422 AgrOrtholog
Ensembl Genes ENSMUSG00000070128 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000093620 ENTREZGENE
MGD MGI:3619422 ENTREZGENE
miRBase MI0003492 ENTREZGENE
NCBI Gene 723875 ENTREZGENE
PhenoGen Mir485 PhenoGen
RNAcentral URS00001935FA RNACentral
  URS00004BFE41 RNACentral
  URS000075E3F6 RNACentral