Mir7b (microRNA 7b) - Rat Genome Database
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Gene: Mir7b (microRNA 7b) Mus musculus
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Symbol: Mir7b
Name: microRNA 7b
RGD ID: 1608173
MGI Page MGI
Description: Is expressed in cerebellum; cerebral cortex; and embryo. Orthologous to human MIR7-3 (microRNA 7-3).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: Mir; mir-7b; Mirn7b; mmu-mir-; mmu-mir-7b
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391756,549,988 - 56,550,098 (+)NCBIGRCm39mm39
GRCm39 Ensembl1756,549,988 - 56,550,098 (+)Ensembl
GRCm381756,242,988 - 56,243,098 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,242,988 - 56,243,098 (+)EnsemblGRCm38mm10GRCm38
MGSCv371756,382,411 - 56,382,521 (+)NCBIGRCm37mm9NCBIm37
Cytogenetic Map17DNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12624257   PMID:16369549   PMID:16381832   PMID:17028171   PMID:17369397   PMID:17604727   PMID:20215419   PMID:20413612   PMID:20439489   PMID:21037258   PMID:21247879   PMID:21267068  
PMID:21822254   PMID:22570807   PMID:23223022   PMID:24039126   PMID:24813889   PMID:25123438   PMID:25858512   PMID:28218624   PMID:28798046   PMID:29887379   PMID:30548297   PMID:30578296  


Genomics

Comparative Map Data
Mir7b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391756,549,988 - 56,550,098 (+)NCBIGRCm39mm39
GRCm39 Ensembl1756,549,988 - 56,550,098 (+)Ensembl
GRCm381756,242,988 - 56,243,098 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,242,988 - 56,243,098 (+)EnsemblGRCm38mm10GRCm38
MGSCv371756,382,411 - 56,382,521 (+)NCBIGRCm37mm9NCBIm37
Cytogenetic Map17DNCBI
MIR7-3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl194,770,670 - 4,770,779 (+)EnsemblGRCh38hg38GRCh38
GRCh38194,770,670 - 4,770,779 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37194,770,682 - 4,770,791 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36194,721,681 - 4,721,790 (+)NCBINCBI36hg18NCBI36
Celera194,708,560 - 4,708,669 (+)NCBI
Cytogenetic Map19p13.3NCBI
HuRef194,532,713 - 4,532,822 (+)NCBIHuRef
CHM1_1194,770,264 - 4,770,373 (+)NCBICHM1_1
Mir7b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.291,080,274 - 1,080,383 (+)NCBI
Rnor_6.0 Ensembl910,812,432 - 10,812,541 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0910,812,432 - 10,812,541 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.099,803,905 - 9,804,014 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera97,429,591 - 7,429,700 (-)NCBICelera
Cytogenetic Map9q12NCBI
MIR7-3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2054,993,200 - 54,993,287 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12054,993,200 - 54,993,287 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
MIR7-1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1191,218,565 - 191,218,648 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11191,218,565 - 191,218,648 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21212,651,386 - 212,651,469 (-)NCBISscrofa10.2Sscrofa10.2susScr3


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141272Tfv1_mtotal food volume 1 (mouse)Not determined480447765330362Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined17986241186688972Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171206732483054339Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172430185958301973Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172574029459740461Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172657408160574223Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172750432261504322Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172831148062311728Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined172982162963821740Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3072257564722705Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173495684169858931Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173565926669659396Mouse
12904951Smmq2_msoleus muscle mass QTL 2 (mouse)173648271570482715Mouse
1300592Pcyts5_mplasmacytoma susceptibility 5 (mouse)Not determined173840588672405969Mouse
10755525Lymph2_mlymphocyte differential 2 (mouse)173849862572498625Mouse
10755534Lymph4_mlymphocyte differential 4 (mouse)173849862572498625Mouse
4141319Hmtb8_mhemostasis and thrombosis rebleeding time 8 (mouse)Not determined4022744774227623Mouse
15039324Nmrs48_mNAFLD-associated magnetic resonance shift 48 (mouse)174063218774632187Mouse
26884390Skwq9_mskull length QTL 9, 10 week (mouse)174340000067500000Mouse
26884428Cvht3_mcranial vault height 3, 5 week (mouse)174620000082100000Mouse
14700692Cihvtq1_mcoxsackieviral infection heart viral titre QTL 1 (mouse)174970000069700000Mouse
1357754Ahl3_mage related hearing loss 3 (mouse)Not determined174989696283897108Mouse
4142243Lfnq5_mlung function QTL 5 (mouse)Not determined5143195157227623Mouse
1357532Bmch7_mbone mechanical trait 7 (mouse)Not determined175145143085451617Mouse
4141879Chlq9_mcirculating hormone level QTL 9 (mouse)Not determined175145143085451617Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Fosmmu-miR-7b-5pMirtarbaseexternal_infoLuciferase reporter assay//Microarray//Northern blFunctional MTI17028171
Soat1mmu-miR-7b-5pMirtarbaseexternal_infoSequencingFunctional MTI (Weak)19536157
Fosmmu-miR-7b-5pTarbaseexternal_infoWesternblitPOSITIVE
Slc39a12mmu-miR-7b-5pTarbaseexternal_infoSequencingPOSITIVE
Fosmmu-miR-7b-3pMirecordsexternal_info{unchanged}NA17028171

Predicted Targets
Summary Value
Count of predictions:21657
Count of gene targets:8827
Count of transcripts:14389
Interacting mature miRNAs:mmu-miR-7b-3p, mmu-miR-7b-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083557
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1756,242,988 - 56,243,098 (+)Ensembl
RefSeq Acc Id: NR_029827
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391756,549,988 - 56,550,098 (+)NCBI
GRCm381756,242,988 - 56,243,098 (+)ENTREZGENE
MGSCv371756,382,411 - 56,382,521 (+)RGD
cM Map17 ENTREZGENE
Sequence:
Promoters
RGD ID:13676496
Promoter ID:EPDNEW_M22397
Type:single initiation site
Name:Mir7b_1
Description:Mus musculus microRNA 7b , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381756,243,079 - 56,243,139EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3619435 AgrOrtholog
Ensembl Genes ENSMUSG00000065491 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083557 ENTREZGENE
MGD MGI:3619435 ENTREZGENE
miRBase MI0000730 ENTREZGENE
NCBI Gene 723883 ENTREZGENE
PhenoGen Mir7b PhenoGen
RNAcentral URS0000224ED9 RNACentral
  URS000075AECB RNACentral
  URS000075DE8D RNACentral