Mir217 (microRNA 217) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Mir217 (microRNA 217) Mus musculus
Analyze
Symbol: Mir217
Name: microRNA 217
RGD ID: 1607673
MGI Page MGI
Description: Involved in gene expression and mesonephric duct formation. Acts upstream of or within several processes, including cellular response to leukemia inhibitory factor; cellular response to lipopolysaccharide; and negative regulation of osteoblast differentiation. Is expressed in embryo. Orthologous to human MIR217 (microRNA 217).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mir-217; Mirn; Mirn217; mmu-mir-2; mmu-mir-217
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391128,713,728 - 28,713,835 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1128,713,728 - 28,713,835 (+)EnsemblGRCm39 Ensembl
GRCm381128,763,728 - 28,763,835 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1128,763,728 - 28,763,835 (+)EnsemblGRCm38mm10GRCm38
MGSCv371128,663,728 - 28,663,835 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1131,135,189 - 31,135,296 (+)NCBICelera
Cytogenetic Map11A3.3NCBI
cM Map1116.23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12554860   PMID:12624257   PMID:15634332   PMID:16369549   PMID:16381832   PMID:17369397   PMID:17604727   PMID:18762567   PMID:20215419   PMID:20413612   PMID:20439489   PMID:20548288  
PMID:20668074   PMID:21037258   PMID:21267068   PMID:21628588   PMID:22308024   PMID:24850757   PMID:25059555   PMID:25797648   PMID:27541609   PMID:28017719   PMID:30041636   PMID:31367007  
PMID:32627107   PMID:32847388   PMID:33207945   PMID:35030644   PMID:35046625   PMID:36357766  


Genomics

Comparative Map Data
Mir217
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391128,713,728 - 28,713,835 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1128,713,728 - 28,713,835 (+)EnsemblGRCm39 Ensembl
GRCm381128,763,728 - 28,763,835 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1128,763,728 - 28,763,835 (+)EnsemblGRCm38mm10GRCm38
MGSCv371128,663,728 - 28,663,835 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1131,135,189 - 31,135,296 (+)NCBICelera
Cytogenetic Map11A3.3NCBI
cM Map1116.23NCBI
MIR217
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38255,982,967 - 55,983,076 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl255,982,967 - 55,983,076 (-)EnsemblGRCh38hg38GRCh38
GRCh37256,210,102 - 56,210,211 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36256,063,605 - 56,063,714 (-)NCBINCBI36Build 36hg18NCBI36
Celera256,050,481 - 56,050,590 (-)NCBICelera
Cytogenetic Map2p16.1NCBI
HuRef255,945,116 - 55,945,225 (-)NCBIHuRef
CHM1_1256,140,034 - 56,140,143 (-)NCBICHM1_1
T2T-CHM13v2.0255,979,867 - 55,979,976 (-)NCBIT2T-CHM13v2.0
Mir217
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814106,732,485 - 106,732,589 (+)NCBIGRCr8
mRatBN7.214102,531,505 - 102,531,609 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14102,531,505 - 102,531,609 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14106,859,726 - 106,859,830 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014108,096,341 - 108,096,445 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014104,568,757 - 104,568,861 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014113,119,529 - 113,119,633 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14113,119,529 - 113,119,633 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014112,809,662 - 112,809,766 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera14101,431,634 - 101,431,738 (+)NCBICelera
Cytogenetic Map14q22NCBI
MIR217
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11056,754,566 - 56,754,647 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1056,754,566 - 56,754,647 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1056,710,952 - 56,711,033 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01057,759,472 - 57,759,553 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11057,459,123 - 57,459,204 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01057,738,695 - 57,738,776 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01058,030,279 - 58,030,360 (-)NCBIUU_Cfam_GSD_1.0
MIR217-1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl385,341,255 - 85,341,361 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1385,341,255 - 85,341,361 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2390,065,707 - 90,065,813 (+)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Mir217
3 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:17131
Count of gene targets:7627
Count of transcripts:12304
Interacting mature miRNAs:mmu-miR-217-3p, mmu-miR-217-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
1300607Tnbs2_mtri-nitrobenzene sulfonic acid susceptible 2 (mouse)Not determined112489805235126680Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000083481
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1128,713,728 - 28,713,835 (+)Ensembl
GRCm38.p6 Ensembl1128,763,728 - 28,763,835 (+)Ensembl
RefSeq Acc Id: NR_029828
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391128,713,728 - 28,713,835 (+)NCBI
GRCm381128,763,728 - 28,763,835 (+)ENTREZGENE
MGSCv371128,663,728 - 28,663,835 (+)RGD
Celera1131,135,189 - 31,135,296 (+)RGD
cM Map11 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2676893 AgrOrtholog
Ensembl Genes ENSMUSG00000065415 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083481 ENTREZGENE
MGD MGI:2676893 ENTREZGENE
miRBase MI0000731 ENTREZGENE
NCBI Gene 387213 ENTREZGENE
PhenoGen Mir217 PhenoGen
RNAcentral URS000010BB67 RNACentral
  URS00001B323C RNACentral
  URS000075D32D RNACentral