Mir30a (microRNA 30a) - Rat Genome Database
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Gene: Mir30a (microRNA 30a) Mus musculus
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Symbol: Mir30a
Name: microRNA 30a
RGD ID: 1607661
MGI Page MGI
Description: Is expressed in limb; liver; lung; and metanephros. Orthologous to human MIR30A (microRNA 30a).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: Mir; mir-30a; Mirn30a; mmu-mir-; mmu-mir-30a
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39123,311,350 - 23,311,420 (+)NCBIGRCm39mm39
GRCm39 Ensembl123,311,350 - 23,311,420 (+)Ensembl
GRCm38123,272,269 - 23,272,339 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl123,272,269 - 23,272,339 (+)EnsemblGRCm38mm10GRCm38
MGSCv37123,279,108 - 23,279,178 (+)NCBIGRCm37mm9NCBIm37
Celera123,119,251 - 23,119,321 (+)NCBICelera
Cytogenetic Map1A5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Additional References at PubMed
PMID:12007417   PMID:15538371   PMID:16369549   PMID:16381832   PMID:16766679   PMID:17369397   PMID:17604727   PMID:18452032   PMID:19091803   PMID:19185580   PMID:19188439   PMID:19559694  
PMID:20215348   PMID:20215419   PMID:20413612   PMID:20548288   PMID:20805985   PMID:20947512   PMID:21037258   PMID:21267068   PMID:21518438   PMID:21822254   PMID:21993888   PMID:22144232  
PMID:22157765   PMID:22771117   PMID:23185045   PMID:23660952   PMID:23960241   PMID:24205035   PMID:25689854   PMID:25751060   PMID:25858512   PMID:26205653   PMID:26299668   PMID:26301516  
PMID:26681446   PMID:27261459   PMID:27576787   PMID:28569782   PMID:28706254   PMID:28765900   PMID:28766848   PMID:28854438   PMID:28925510   PMID:29894647   PMID:30382766   PMID:30484883  
PMID:30520138   PMID:30635942   PMID:30753312   PMID:31545427   PMID:31748850   PMID:32799658  


Genomics

Comparative Map Data
Mir30a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39123,311,350 - 23,311,420 (+)NCBIGRCm39mm39
GRCm39 Ensembl123,311,350 - 23,311,420 (+)Ensembl
GRCm38123,272,269 - 23,272,339 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl123,272,269 - 23,272,339 (+)EnsemblGRCm38mm10GRCm38
MGSCv37123,279,108 - 23,279,178 (+)NCBIGRCm37mm9NCBIm37
Celera123,119,251 - 23,119,321 (+)NCBICelera
Cytogenetic Map1A5NCBI
MIR30A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl671,403,551 - 71,403,621 (-)EnsemblGRCh38hg38GRCh38
GRCh38671,403,551 - 71,403,621 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37672,113,254 - 72,113,324 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36672,169,974 - 72,170,044 (-)NCBINCBI36hg18NCBI36
Celera672,501,691 - 72,501,761 (-)NCBI
Cytogenetic Map6q13NCBI
HuRef669,311,486 - 69,311,556 (-)NCBIHuRef
CHM1_1672,279,288 - 72,279,358 (-)NCBICHM1_1
Mir30a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2925,737,600 - 25,737,670 (+)NCBI
Rnor_6.0 Ensembl929,542,635 - 29,542,705 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0929,542,635 - 29,542,705 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0928,377,823 - 28,377,893 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera923,285,608 - 23,285,678 (+)NCBICelera
Cytogenetic Map9q13NCBI
MIR30A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1233,783,891 - 33,783,961 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11233,783,894 - 33,783,956 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
MIR30A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl151,412,827 - 51,412,933 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1151,412,827 - 51,412,933 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2157,750,736 - 57,750,842 (-)NCBISscrofa10.2Sscrofa10.2susScr3


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301891Alcp25_malcohol preference locus 25 (mouse)Not determined1125132961Mouse
1300834Cia20_mcollagen induced arthritis 20 (mouse)Not determined1125132961Mouse
1301482Morph1_mmorphine antinociception 1 (mouse)Not determined1130297523Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1281197036812128Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1281197036812128Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13000000185000000Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1387139637871663Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1494244138942441Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1963436143634520Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11130140145301401Mouse
4141646Fecq3_mfecundity QTL 3 (mouse)Not determined11284669626478604Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11902627053026373Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11902627053026373Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11902627053026373Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11930000053300000Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12307051073937756Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Ak1mmu-miR-30a-5pMirtarbaseexternal_infoMicroarray//Luciferase reporter assay//Northern blFunctional MTI19185580
Abcb1bmmu-miR-30a-5pMirtarbaseexternal_infoMicroarray//Northern blot//qRT-PCRFunctional MTI (Weak)19185580
Bdnfmmu-miR-30a-5pMirtarbaseexternal_infoELISA//Luciferase reporter assay//Microarray//qRT-Functional MTI20921386
Snai1mmu-miR-30a-5pMirtarbaseexternal_infoLuciferase reporter assay//Western blotFunctional MTI21945074
Vimmmu-miR-30a-5pOncomiRDBexternal_infoNANA22476851
Dtlmmu-miR-30a-5pOncomiRDBexternal_infoNANA22287560
Becn1mmu-miR-30a-5pOncomiRDBexternal_infoNANA22157765
Snai1mmu-miR-30a-5pOncomiRDBexternal_infoNANA21633953
Mybmmu-miR-30a-5pOncomiRDBexternal_infoNANA21187425
Ube2immu-miR-30a-5pOncomiRDBexternal_infoNANA20498642
Becn1mmu-miR-30a-5pOncomiRDBexternal_infoNANA19535919

Predicted Targets
Summary Value
Count of predictions:24216
Count of gene targets:9106
Count of transcripts:15119
Interacting mature miRNAs:mmu-miR-30a-3p, mmu-miR-30a-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083471
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl123,272,269 - 23,272,339 (+)Ensembl
RefSeq Acc Id: NR_029533
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39123,311,350 - 23,311,420 (+)NCBI
GRCm38123,272,269 - 23,272,339 (+)ENTREZGENE
MGSCv37123,279,108 - 23,279,178 (+)RGD
Celera123,119,251 - 23,119,321 (+)RGD
cM Map1 ENTREZGENE
Sequence:
Promoters
RGD ID:6873306
Promoter ID:EPDNEW_M104
Type:single initiation site
Name:Mir30a_1
Description:Mus musculus microRNA 30a , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38123,272,339 - 23,272,399EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2676907 AgrOrtholog
Ensembl Genes ENSMUSG00000065405 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083471 ENTREZGENE
MGD MGI:2676907 ENTREZGENE
miRBase MI0000144 ENTREZGENE
NCBI Gene 387225 ENTREZGENE
PhenoGen Mir30a PhenoGen
RNAcentral URS0000065D58 RNACentral
  URS000043D1A9 RNACentral
  URS000075D322 RNACentral