Mir542 (microRNA 542) - Rat Genome Database
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Gene: Mir542 (microRNA 542) Mus musculus
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Symbol: Mir542
Name: microRNA 542
RGD ID: 1607620
MGI Page MGI
Description: Involved in cellular response to leukemia inhibitory factor; hematopoietic stem cell differentiation; and sensory perception of sound. Orthologous to human MIR542 (microRNA 542).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-542; Mirn; Mirn542; mmu-mir-5; mmu-mir-542
RGD Orthologs
Human
Rat
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X52,138,280 - 52,138,364 (-)NCBIGRCm39mm39
GRCm38X53,049,403 - 53,049,487 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX53,049,403 - 53,049,487 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X50,402,580 - 50,402,664 (-)NCBIGRCm37mm9NCBIm37
CeleraX40,475,386 - 40,475,470 (-)NCBICelera
Cytogenetic MapXA5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16274478   PMID:16381832   PMID:16582102   PMID:16973894   PMID:17604727   PMID:18184563   PMID:20215419   PMID:20413612   PMID:20439489   PMID:20660734   PMID:21037258   PMID:21267068  
PMID:21822254   PMID:23646144   PMID:24403060   PMID:24503542   PMID:30216510   PMID:30368874   PMID:30467286   PMID:31080058  


Genomics

Comparative Map Data
Mir542
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X52,138,280 - 52,138,364 (-)NCBIGRCm39mm39
GRCm38X53,049,403 - 53,049,487 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX53,049,403 - 53,049,487 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X50,402,580 - 50,402,664 (-)NCBIGRCm37mm9NCBIm37
CeleraX40,475,386 - 40,475,470 (-)NCBICelera
Cytogenetic MapXA5NCBI
MIR542
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX134,541,341 - 134,541,437 (-)EnsemblGRCh38hg38GRCh38
GRCh38X134,541,341 - 134,541,437 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X133,675,371 - 133,675,467 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X133,503,036 - 133,503,132 (-)NCBINCBI36hg18NCBI36
CeleraX134,062,199 - 134,062,295 (-)NCBI
Cytogenetic MapXq26.3NCBI
HuRefX123,074,367 - 123,074,463 (-)NCBIHuRef
CHM1_1X133,587,121 - 133,587,217 (-)NCBICHM1_1
Mir542
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X132,802,623 - 132,802,701 (-)NCBI
Rnor_6.0 EnsemblX158,152,146 - 158,152,224 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X158,152,146 - 158,152,224 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X152,777,453 - 152,777,531 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic MapXq37NCBI
MIR542
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX110,382,597 - 110,382,676 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X110,382,597 - 110,382,676 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7360056151324042Mouse
13208553Wght11_mweight 11 (mouse)X1200000060000000Mouse
13208557Lgth13_mbody length 13 (mouse)X1200000060000000Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3390000056800000Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3540000057800000Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3600000078000000Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX4006835474068454Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX4006835474068454Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX4083262187216531Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4243170076431843Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4265674676656858Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4698383880983961Mouse
1301212Bw19_mbody weight QTL 19 (mouse)Not determinedX4728804353323450Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined48090244130864007Mouse
1300853Aggr2_maggression 2 (mouse)Not determinedX4998229053170319Mouse
1301351Obq6_mobesity QTL 6 (mouse)Not determinedX5168349871391145Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5290000090700000Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Egfrmmu-miR-542-5pOncomiRDBexternal_infoNANA22426479
Ilkmmu-miR-542-3pOncomiRDBexternal_infoNANA21860426
Birc5mmu-miR-542-3pOncomiRDBexternal_infoNANA20728447

Predicted Targets
Summary Value
Count of predictions:23061
Count of gene targets:10459
Count of transcripts:17590
Interacting mature miRNAs:mmu-miR-542-3p, mmu-miR-542-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000102186
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX53,049,403 - 53,049,487 (-)Ensembl
RefSeq Acc Id: NR_030264
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X52,138,280 - 52,138,364 (-)NCBI
GRCm38X53,049,403 - 53,049,487 (-)ENTREZGENE
MGSCv37X50,402,580 - 50,402,664 (-)RGD
CeleraX40,475,386 - 40,475,470 (-)RGD
cM MapX ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3619431 AgrOrtholog
Ensembl Genes ENSMUSG00000076140 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000102186 ENTREZGENE
MGD MGI:3619431 ENTREZGENE
miRBase MI0003522 ENTREZGENE
NCBI Gene 723901 ENTREZGENE
PhenoGen Mir542 PhenoGen
RNAcentral URS00001AF64C RNACentral
  URS00004F859B RNACentral
  URS000069971F RNACentral