Mir296 (microRNA 296) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Mir296 (microRNA 296) Mus musculus
Analyze
Symbol: Mir296
Name: microRNA 296
RGD ID: 1607615
MGI Page MGI
Description: Involved in several processes, including cellular response to ethanol; cellular response to leukemia inhibitory factor; and sensory perception of sound. Is expressed in central nervous system; dorsal root ganglion; lung; neural retina; and trigeminal nerve. Orthologous to human MIR296 (microRNA 296).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-296; Mirn; Mirn296; mmu-mir-2; mmu-mir-296
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392174,108,840 - 174,108,918 (-)NCBIGRCm39mm39
GRCm39 Ensembl2174,108,840 - 174,108,918 (-)Ensembl
GRCm382174,267,047 - 174,267,125 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2174,267,047 - 174,267,125 (-)EnsemblGRCm38mm10GRCm38
MGSCv372174,092,548 - 174,092,626 (-)NCBIGRCm37mm9NCBIm37
Celera2180,232,045 - 180,232,123 (-)NCBICelera
Cytogenetic Map2H4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12919684   PMID:16381832   PMID:17369397   PMID:17604727   PMID:18452032   PMID:18806776   PMID:19091803   PMID:19559694   PMID:20215419   PMID:20413612   PMID:20439489   PMID:21037258  
PMID:21267068   PMID:21643016   PMID:23360399   PMID:23646144   PMID:25751060   PMID:26107383   PMID:31433907  


Genomics

Comparative Map Data
Mir296
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392174,108,840 - 174,108,918 (-)NCBIGRCm39mm39
GRCm39 Ensembl2174,108,840 - 174,108,918 (-)Ensembl
GRCm382174,267,047 - 174,267,125 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2174,267,047 - 174,267,125 (-)EnsemblGRCm38mm10GRCm38
MGSCv372174,092,548 - 174,092,626 (-)NCBIGRCm37mm9NCBIm37
Celera2180,232,045 - 180,232,123 (-)NCBICelera
Cytogenetic Map2H4NCBI
MIR296
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2058,817,615 - 58,817,694 (-)EnsemblGRCh38hg38GRCh38
GRCh382058,817,615 - 58,817,694 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372057,392,670 - 57,392,749 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera2054,133,130 - 54,133,209 (-)NCBI
Cytogenetic Map20q13.32NCBI
HuRef2054,179,091 - 54,179,170 (-)NCBIHuRef
CHM1_12057,294,310 - 57,294,389 (-)NCBICHM1_1
Mir296
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23163,051,838 - 163,051,915 (-)NCBI
Rnor_6.0 Ensembl3172,357,490 - 172,357,567 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03172,357,490 - 172,357,567 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03178,408,788 - 178,408,865 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3162,226,950 - 162,227,027 (-)NCBICelera
Cytogenetic Map3q43NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301677Alcp6_malcohol preference locus 6 (mouse)Not determined2163844614182113224Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145676855179677006Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2118112449174483070Mouse
1302003Sluc17_msusceptibility to lung cancer 17 (mouse)Not determined2162791700182113224Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145355029179355165Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142751556178800659Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145386799179386921Mouse
1357435Epfq2_mepididymal fat pad weight QTL 2 (mouse)Not determined2162895006178800659Mouse
1558991Tailq4_mtail length QTL 4 (mouse)Not determined2162895006178800659Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144673941181254801Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155982127182113224Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156354671182113224Mouse
1300676Prdt2_mprion disease incubation time 2 (mouse)Not determined2164873361182113224Mouse
1300688Nidd2k_mNidd2 on KK-A (mouse)Not determined2158236417178800659Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2150146982182113224Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151936377182113224Mouse
1301348Alcp5_malcohol preference locus 5 (mouse)Not determined2163844614182113224Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150370301182113224Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149394987182113224Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148822973182113224Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285893925181254801Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150370301182113224Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142586427176586530Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150370301182113224Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148396284182113224Mouse
12910811Pwbwq3_mpre-weaning body weight QTL 3 (mouse)2169952882179278998Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151867353174547331Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152487900182113224Mouse
12801461Intim1_mintima modifier 1 (mouse)2142586427176586530Mouse
11353826Bdln10_mbody length 10 (mouse)2140599562174599562Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Tmed9mmu-miR-296-5pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI22114321
Nanogmmu-miR-296-5pMirtarbaseexternal_infoqRT-PCR//Luciferase reporter assay//Western blotFunctional MTI18806776
Cdx1mmu-miR-296-5pOncomiRDBexternal_infoNANA23353818
Cdkn1ammu-miR-296-5pOncomiRDBexternal_infoNANA21724611
Scribmmu-miR-296-5pOncomiRDBexternal_infoNANA21643016
Hgsmmu-miR-296-5pOncomiRDBexternal_infoNANA18977327
Tmed9mmu-miR-296-3pMirecordsexternal_infoNANA22114321

Predicted Targets
Summary Value
Count of predictions:50395
Count of gene targets:17659
Count of transcripts:35956
Interacting mature miRNAs:mmu-miR-296-3p, mmu-miR-296-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Rnahybrid,Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083587
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2174,267,047 - 174,267,125 (-)Ensembl
RefSeq Acc Id: NR_029646
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392174,108,840 - 174,108,918 (-)NCBI
GRCm382174,267,047 - 174,267,125 (-)ENTREZGENE
MGSCv372174,092,548 - 174,092,626 (-)RGD
Celera2180,232,045 - 180,232,123 (-)RGD
cM Map2 ENTREZGENE
Sequence:
Promoters
RGD ID:6879984
Promoter ID:EPDNEW_M3422
Type:single initiation site
Name:Mir296_1
Description:Mus musculus microRNA 296 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382174,267,055 - 174,267,115EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3619269 AgrOrtholog
Ensembl Genes ENSMUSG00000065521 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083587 ENTREZGENE
MGD MGI:3619269 ENTREZGENE
miRBase MI0000394 ENTREZGENE
NCBI Gene 723906 ENTREZGENE
PhenoGen Mir296 PhenoGen
RNAcentral URS00001C3AC1 RNACentral
  URS00001F4670 RNACentral
  URS000075AC4D RNACentral