Mir351 (microRNA 351) - Rat Genome Database

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Gene: Mir351 (microRNA 351) Mus musculus
Analyze
Symbol: Mir351
Name: microRNA 351
RGD ID: 1607611
MGI Page MGI
Description: Involved in several processes, including miRNA-mediated post-transcriptional gene silencing; myoblast proliferation; and myotube cell development. Acts upstream of or within several processes, including cellular response to forskolin; cellular response to leukemia inhibitory factor; and sensory perception of sound. Is expressed in heart; metanephros; and testis.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: Mirn; Mirn351; mmu-mir-3; mmu-mir-351
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X52,142,132 - 52,142,230 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX52,142,132 - 52,142,230 (-)EnsemblGRCm39 Ensembl
GRCm38X53,053,255 - 53,053,353 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX53,053,255 - 53,053,353 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X50,406,432 - 50,406,530 (-)NCBIGRCm37MGSCv37mm9NCBIm37
CeleraX40,479,256 - 40,479,354 (-)NCBICelera
Cytogenetic MapXA5NCBI
cM MapX29.31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:17369397   PMID:17604727   PMID:20215419   PMID:20413612   PMID:20439489   PMID:20548288   PMID:20668074   PMID:20933514   PMID:21247879   PMID:21267068   PMID:21822254  
PMID:21993888   PMID:22336716   PMID:22968638   PMID:23493425   PMID:23646144   PMID:25946189   PMID:26303911   PMID:26505789   PMID:27071035   PMID:29255036   PMID:30216112   PMID:31287224  
PMID:34328196   PMID:36180828   PMID:36929003  


Genomics

Variants

.
Variants in Mir351
1 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:21685
Count of gene targets:9511
Count of transcripts:15630
Interacting mature miRNAs:mmu-miR-351-3p, mmu-miR-351-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3333746355845360Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3466365356845360Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX3911371473113814Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX3911371473113814Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4147706075477203Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4170210675702218Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4602744480027567Mouse
1301212Bw19_mbody weight QTL 19 (mouse)Not determinedX4637692052412327Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
1300853Aggr2_maggression 2 (mouse)Not determinedX4907116752259196Mouse
1301351Obq6_mobesity QTL 6 (mouse)Not determinedX5077237570434751Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5198887789743606Mouse

Markers in Region
Mir351  
Mouse AssemblyChrPosition (strand)SourceJBrowse
cM MapX29.31UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_029776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BX649621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000083569
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX52,142,132 - 52,142,230 (-)Ensembl
GRCm38.p6 EnsemblX53,053,255 - 53,053,353 (-)Ensembl
RefSeq Acc Id: NR_029776
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X52,142,132 - 52,142,230 (-)NCBI
GRCm38X53,053,255 - 53,053,353 (-)ENTREZGENE
MGSCv37X50,406,432 - 50,406,530 (-)RGD
CeleraX40,479,256 - 40,479,354 (-)RGD
cM MapX ENTREZGENE
Sequence:
Promoters
RGD ID:13680474
Promoter ID:EPDNEW_M24386
Type:single initiation site
Name:Mir351_1
Description:Mus musculus microRNA 351 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X53,053,273 - 53,053,333EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000065503 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083569 ENTREZGENE
MGD MGI:3619367 ENTREZGENE
miRBase MI0000643 ENTREZGENE
NCBI Gene 723910 ENTREZGENE
PhenoGen Mir351 PhenoGen
RNAcentral URS0000535C1B RNACentral
  URS0000537D7C RNACentral
  URS000062BA5C RNACentral