Mir484 (microRNA 484) - Rat Genome Database

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Gene: Mir484 (microRNA 484) Mus musculus
Analyze
Symbol: Mir484
Name: microRNA 484
RGD ID: 1607606
MGI Page MGI
Description: Acts upstream of or within cellular response to lipopolysaccharide and long-term synaptic potentiation. Is expressed in sensory organ and skeleton. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human MIR484 (microRNA 484).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mir-484; Mirn; Mirn484; mmu-mir-4; mmu-mir-484
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391613,977,490 - 13,977,556 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1613,977,490 - 13,977,556 (+)EnsemblGRCm39 Ensembl
GRCm381614,159,626 - 14,159,692 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1614,159,626 - 14,159,692 (+)EnsemblGRCm38mm10GRCm38
MGSCv371614,159,719 - 14,159,785 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1614,766,160 - 14,766,226 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map169.7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. MiR-484 promotes non-small-cell lung cancer (NSCLC) progression through inhibiting Apaf-1 associated with the suppression of apoptosis. Li T, etal., Biomed Pharmacother. 2017 Dec;96:153-164. doi: 10.1016/j.biopha.2017.09.102. Epub 2017 Oct 2.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:17604727   PMID:18762567   PMID:18923076   PMID:20215419   PMID:21037258   PMID:21267068   PMID:21822254   PMID:22510686   PMID:25057983   PMID:25858512   PMID:26860770  
PMID:27378146   PMID:32296071   PMID:33687475   PMID:33724167   PMID:36963287   PMID:37752619  


Genomics

Comparative Map Data
Mir484
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391613,977,490 - 13,977,556 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1613,977,490 - 13,977,556 (+)EnsemblGRCm39 Ensembl
GRCm381614,159,626 - 14,159,692 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1614,159,626 - 14,159,692 (+)EnsemblGRCm38mm10GRCm38
MGSCv371614,159,719 - 14,159,785 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1614,766,160 - 14,766,226 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map169.7NCBI
MIR484
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381615,643,294 - 15,643,372 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1615,643,294 - 15,643,372 (+)EnsemblGRCh38hg38GRCh38
GRCh371615,737,151 - 15,737,229 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361615,644,651 - 15,644,729 (+)NCBINCBI36Build 36hg18NCBI36
Celera1615,417,628 - 15,417,706 (+)NCBICelera
Cytogenetic Map16p13.11NCBI
HuRef1615,130,977 - 15,131,055 (+)NCBIHuRef
CHM1_11615,821,531 - 15,821,609 (+)NCBICHM1_1
T2T-CHM13v2.01615,648,199 - 15,648,277 (+)NCBIT2T-CHM13v2.0
Mir484
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8101,394,905 - 1,394,981 (-)NCBIGRCr8
mRatBN7.210887,684 - 887,760 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10887,684 - 887,760 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx105,584,445 - 5,584,521 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01034,981,321 - 34,981,397 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010900,644 - 900,720 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01027,845 - 27,921 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1027,845 - 27,921 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01027,845 - 27,921 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1011,477,239 - 11,477,315 (-)NCBICelera
Cytogenetic Map10q11NCBI

Variants

.
Variants in Mir484
5 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:16899
Count of gene targets:8586
Count of transcripts:14138
Interacting mature miRNAs:mmu-miR-484
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141060Pbwg19_mpostnatal body weight growth 19 (mouse)Not determined16120780888Mouse
1300632Loca2_mlocomotor activity 2 (mouse)Not determined16122500574Mouse
10043879Adip25_madiposity 25 (mouse)Not determined16122520318Mouse
1301575Tanidd3_mtally ho associated non-insulin dependednt diabetes mellitus 3 (mouse)Not determined16122897739Mouse
4141468Nhdlq10_mnon-HDL QTL 10 (mouse)Not determined16124263853Mouse
1301970Heal11_mwound healing/regeneration 11 (mouse)Not determined16124263853Mouse
1301384Dice1_mdetermination of interleukin 4 commitment 1 (mouse)Not determined16128434358Mouse
10402497Lmr23_mleishmaniasis resistance 23 (mouse)Not determined16129674200Mouse
1301559Bbaa19_mB.burgdorferi-associated arthritis 19 (mouse)Not determined16130066977Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130814572Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
1302106Rapop1_mradiation-induced apoptosis 1 (mouse)Not determined16378077915731053Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16647700935021216Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
4142460Nilac10_mnicotine induced locomotor activity 10 (mouse)Not determined16713690629225471Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000093566
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1613,977,490 - 13,977,556 (+)Ensembl
GRCm38.p6 Ensembl1614,159,626 - 14,159,692 (+)Ensembl
RefSeq Acc Id: NR_030252
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391613,977,490 - 13,977,556 (+)NCBI
GRCm381614,159,626 - 14,159,692 (+)ENTREZGENE
MGSCv371614,159,719 - 14,159,785 (+)RGD
Celera1614,766,160 - 14,766,226 (+)RGD
cM Map16 ENTREZGENE
Sequence:
Promoters
RGD ID:8685518
Promoter ID:EPDNEW_M20790
Type:multiple initiation site
Name:Mir484_1
Description:Mus musculus microRNA 484 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381614,159,638 - 14,159,698EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3619421 AgrOrtholog
Ensembl Genes ENSMUSG00000070074 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000093566 ENTREZGENE
MGD MGI:3619421 ENTREZGENE
miRBase MI0003491 ENTREZGENE
NCBI Gene 723916 ENTREZGENE
PhenoGen Mir484 PhenoGen
RNAcentral URS0000597BED RNACentral
  URS00006A9C72 RNACentral