Mir299a (microRNA 299a) - Rat Genome Database

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Gene: Mir299a (microRNA 299a) Mus musculus
Analyze
Symbol: Mir299a
Name: microRNA 299a
RGD ID: 1607595
MGI Page MGI
Description: Is expressed in lung. Orthologous to human MIR299 (microRNA 299).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-299a; Mir299; Mirn; Mirn299; mmu-mir-2; mmu-mir-298; mmu-mir-299; mmu-mir-299a
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912109,677,072 - 109,677,134 (+)NCBIGRCm39mm39
GRCm39 Ensembl12109,677,072 - 109,677,134 (+)Ensembl
GRCm3812109,710,638 - 109,710,700 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12109,710,638 - 109,710,700 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,948,848 - 110,948,910 (+)NCBIGRCm37mm9NCBIm37
Celera12110,907,773 - 110,907,800 (+)NCBICelera
Cytogenetic Map12F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:12919684   PMID:16381832   PMID:17369397   PMID:17604727   PMID:18452032   PMID:19559694   PMID:20215419   PMID:20413612   PMID:21037258   PMID:21267068   PMID:22614019   PMID:33420269  


Genomics

Comparative Map Data
Mir299a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912109,677,072 - 109,677,134 (+)NCBIGRCm39mm39
GRCm39 Ensembl12109,677,072 - 109,677,134 (+)Ensembl
GRCm3812109,710,638 - 109,710,700 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12109,710,638 - 109,710,700 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,948,848 - 110,948,910 (+)NCBIGRCm37mm9NCBIm37
Celera12110,907,773 - 110,907,800 (+)NCBICelera
Cytogenetic Map12F1NCBI
MIR299
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl14101,023,794 - 101,023,856 (+)EnsemblGRCh38hg38GRCh38
GRCh3814101,023,794 - 101,023,856 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3714101,490,131 - 101,490,193 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614100,559,883 - 100,559,945 (+)NCBINCBI36hg18NCBI36
Celera1481,546,163 - 81,546,225 (+)NCBI
Cytogenetic Map14q32.31NCBI
HuRef1481,673,614 - 81,673,676 (+)NCBIHuRef
CHM1_114101,428,267 - 101,428,329 (+)NCBICHM1_1
Mir299b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26128,723,635 - 128,723,752 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl6128,723,635 - 128,723,752 (-)Ensembl
Rnor_6.06133,859,295 - 133,859,412 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6133,859,295 - 133,859,412 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06143,021,466 - 143,021,583 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera6126,308,016 - 126,308,133 (-)NCBICelera
Cytogenetic Map6q32NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235235497109969809Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268300000113400000Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277545446111545446Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80909934113419913Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80909934113419913Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80909934113419913Mouse
1357701Lvrq10_mliver weight QTL 10 (mouse)Not determined1280909934113419913Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280909934113419913Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1281022884115022884Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282700137116700137Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283565816117565965Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283565816117565965Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285995320119995424Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286349301114868033Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288086615120129022Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288086615120129022Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288342095120129022Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289697812120129022Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289972772120129022Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290342009120129022Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291256256120129022Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292783591120129022Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292783591120129022Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292969663120129022Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293298027120129022Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294179630120129022Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296896717120129022Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296896717120129022Mouse
10412075Nils1_mneointima lesion size 1 (mouse)Not determined12102060930120129022Mouse
4141297Plyid_mPolymeric IgA dominance (mouse)Not determined109217459115921502Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:18916
Count of gene targets:8688
Count of transcripts:14061
Interacting mature miRNAs:mmu-miR-299a-3p, mmu-miR-299a-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000198411
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12109,677,072 - 109,677,134 (+)Ensembl
GRCm38.p6 Ensembl12109,710,638 - 109,710,700 (+)Ensembl
RefSeq Acc Id: NR_029650
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912109,677,072 - 109,677,134 (+)NCBI
GRCm3812109,710,638 - 109,710,700 (+)ENTREZGENE
MGSCv3712110,948,848 - 110,948,910 (+)RGD
Celera12110,907,773 - 110,907,800 (+)RGD
cM Map12 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3619322 AgrOrtholog
Ensembl Genes ENSMUSG00000106653 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000198411 ENTREZGENE
MGD MGI:3619322 ENTREZGENE
miRBase MI0000399 ENTREZGENE
NCBI Gene 723927 ENTREZGENE
PhenoGen Mir299a PhenoGen
RNAcentral URS000017DBB8 RNACentral
  URS0000258C1E RNACentral
  URS0000676278 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-05-27 Mir299a  microRNA 299a  Mir299  microRNA 299  Symbol and/or name change 5135510 APPROVED
2011-08-17 Mir299  microRNA 299  Mir299  microRNA 299  Symbol and/or name change 5135510 APPROVED