Mir335 (microRNA 335) - Rat Genome Database
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Gene: Mir335 (microRNA 335) Mus musculus
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Symbol: Mir335
Name: microRNA 335
RGD ID: 1607592
MGI Page MGI
Description: Is expressed in several structures, including branchial arch; gut; limb bud; lung; and retina. Orthologous to human MIR335 (microRNA 335).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-3; mir-335; Mirn; Mirn335; mmu-mir-3; mmu-mir-335
RGD Orthologs
Human
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39630,741,298 - 30,741,395 (+)NCBIGRCm39mm39
GRCm39 Ensembl630,741,298 - 30,741,395 (+)Ensembl
GRCm38630,741,299 - 30,741,396 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl630,741,299 - 30,741,396 (+)EnsemblGRCm38mm10GRCm38
MGSCv37630,691,299 - 30,691,396 (+)NCBIGRCm37mm9NCBIm37
Celera630,751,223 - 30,751,321 (+)NCBICelera
Cytogenetic Map6A3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

Additional References at PubMed
PMID:14691248   PMID:15634332   PMID:16381832   PMID:17369397   PMID:17597072   PMID:17604727   PMID:17687032   PMID:17936263   PMID:18282110   PMID:18452032   PMID:18723672   PMID:19188439  
PMID:19460359   PMID:19559694   PMID:19933188   PMID:20215419   PMID:20413612   PMID:20439489   PMID:21037258   PMID:21267068   PMID:21351149   PMID:21822254   PMID:22144232   PMID:22950940  
PMID:23307555   PMID:24347469   PMID:24449834   PMID:24744440   PMID:26098312   PMID:26107383   PMID:26986081   PMID:27191548   PMID:28039088   PMID:28846804   PMID:29734116   PMID:29866515  
PMID:30125687   PMID:30341900   PMID:30537731   PMID:30578296   PMID:32015687  


Genomics

Comparative Map Data
Mir335
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39630,741,298 - 30,741,395 (+)NCBIGRCm39mm39
GRCm39 Ensembl630,741,298 - 30,741,395 (+)Ensembl
GRCm38630,741,299 - 30,741,396 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl630,741,299 - 30,741,396 (+)EnsemblGRCm38mm10GRCm38
MGSCv37630,691,299 - 30,691,396 (+)NCBIGRCm37mm9NCBIm37
Celera630,751,223 - 30,751,321 (+)NCBICelera
Cytogenetic Map6A3.3NCBI
MIR335
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7130,496,111 - 130,496,204 (+)EnsemblGRCh38hg38GRCh38
GRCh387130,496,111 - 130,496,204 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh377130,135,952 - 130,136,045 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367129,923,187 - 129,923,280 (+)NCBINCBI36hg18NCBI36
Celera7124,931,728 - 124,931,821 (+)NCBI
Cytogenetic Map7q32.2NCBI
HuRef7124,498,447 - 124,498,540 (+)NCBIHuRef
CHM1_17130,069,373 - 130,069,466 (+)NCBICHM1_1
CRA_TCAGchr7v27129,521,359 - 129,521,452 (+)NCBI
MIR335
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl146,444,847 - 6,444,932 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1146,444,861 - 6,444,918 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
MIR335
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1818,341,568 - 18,341,659 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11818,341,580 - 18,341,659 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21819,338,000 - 19,338,079 (-)NCBISscrofa10.2Sscrofa10.2susScr3


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301131Chol2_mcholesterol 2 (mouse)Not determined6132144496Mouse
5491191Mobq2_mmultigenic obesity QTL 2 (mouse)Not determined6132144496Mouse
1302024Skull7_mskull morphology 7 (mouse)Not determined6132144496Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
15039372Nmrs22_mNAFLD-associated magnetic resonance shift 22 (mouse)6147633535476335Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300731Smdq3_msegregation of mitochondrial DNA QTL 3 (mouse)Not determined6424920738249326Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345314181Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348726677Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348726677Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348726677Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707543297169Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797246118070Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122246751334Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122246751334Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61770000053500000Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61773466351734784Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1773466351734784Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61773466351734784Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61963941153639411Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61963941153639411Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61963941153639411Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268671322775Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62007289554072895Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62380000057800000Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2831405962314181Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Rb1mmu-miR-335-5pMirtarbaseexternal_infoLuciferase reporter assay//Western blotFunctional MTI20713524
Rock1mmu-miR-335-5pOncomiRDBexternal_infoNANA22382496
Bcl2l2mmu-miR-335-5pOncomiRDBexternal_infoNANA21822301
Esr1mmu-miR-335-5pOncomiRDBexternal_infoNANA21618216
Daam1mmu-miR-335-5pOncomiRDBexternal_infoNANA21592405
Rb1mmu-miR-335-5pOncomiRDBexternal_infoNANA20713524
Tnnc1mmu-miR-335-5pOncomiRDBexternal_infoNANA18185580

Predicted Targets
Summary Value
Count of predictions:29370
Count of gene targets:10570
Count of transcripts:17601
Interacting mature miRNAs:mmu-miR-335-3p, mmu-miR-335-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083567
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl630,741,299 - 30,741,396 (+)Ensembl
RefSeq Acc Id: NR_029900
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39630,741,298 - 30,741,395 (+)NCBI
GRCm38630,741,299 - 30,741,396 (+)ENTREZGENE
MGSCv37630,691,299 - 30,691,396 (+)RGD
Celera630,751,223 - 30,751,321 (+)RGD
cM Map6 ENTREZGENE
Sequence:
Promoters
RGD ID:6889246
Promoter ID:EPDNEW_M8074
Type:single initiation site
Name:Mir335_1
Description:Mus musculus microRNA 335 , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38630,741,377 - 30,741,437EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3619348 AgrOrtholog
Ensembl Genes ENSMUSG00000065501 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083567 ENTREZGENE
MGD MGI:3619348 ENTREZGENE
miRBase MI0000817 ENTREZGENE
NCBI Gene 723930 ENTREZGENE
PhenoGen Mir335 PhenoGen
RNAcentral URS0000237AF9 RNACentral
  URS00005092C2 RNACentral
  URS0000710A73 RNACentral