Mir433 (microRNA 433) - Rat Genome Database
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Gene: Mir433 (microRNA 433) Mus musculus
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Symbol: Mir433
Name: microRNA 433
RGD ID: 1607585
MGI Page MGI
Description: Is expressed in dorsal root ganglion; trigeminal ganglion; and ventral grey horn. Orthologous to human MIR433 (microRNA 433).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-433; Mirn; Mirn433; mmu-mir-4; mmu-mir-433
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912109,558,149 - 109,558,272 (+)NCBIGRCm39mm39
GRCm39 Ensembl12109,558,149 - 109,558,272 (+)Ensembl
GRCm3812109,591,715 - 109,591,838 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12109,591,715 - 109,591,838 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,829,925 - 110,830,048 (+)NCBIGRCm37mm9NCBIm37
Celera12110,786,416 - 110,786,539 (+)NCBICelera
Cytogenetic Map12F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:15854907   PMID:16381832   PMID:17604727   PMID:18776219   PMID:18974780   PMID:19946636   PMID:20215419   PMID:20413612   PMID:20439489   PMID:21037258   PMID:21247879   PMID:21267068  
PMID:23353875   PMID:23868013   PMID:23979134   PMID:25858512   PMID:26138477   PMID:27551048   PMID:28713945  


Genomics

Comparative Map Data
Mir433
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912109,558,149 - 109,558,272 (+)NCBIGRCm39mm39
GRCm39 Ensembl12109,558,149 - 109,558,272 (+)Ensembl
GRCm3812109,591,715 - 109,591,838 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12109,591,715 - 109,591,838 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712110,829,925 - 110,830,048 (+)NCBIGRCm37mm9NCBIm37
Celera12110,786,416 - 110,786,539 (+)NCBICelera
Cytogenetic Map12F1NCBI
MIR433
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl14100,881,886 - 100,881,978 (+)EnsemblGRCh38hg38GRCh38
GRCh3814100,881,886 - 100,881,978 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3714101,348,223 - 101,348,315 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614100,417,975 - 100,418,067 (+)NCBINCBI36hg18NCBI36
Celera1481,402,042 - 81,402,134 (+)NCBI
Cytogenetic Map14q32.2NCBI
HuRef1481,529,954 - 81,530,046 (+)NCBIHuRef
CHM1_114101,286,411 - 101,286,503 (+)NCBICHM1_1
Mir433
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26128,545,119 - 128,545,211 (+)NCBI
Rnor_6.0 Ensembl6133,712,334 - 133,712,426 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.06133,712,334 - 133,712,426 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06142,874,511 - 142,874,603 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera6126,093,558 - 126,093,650 (+)NCBICelera
Cytogenetic Map6q32NCBI
MIR433
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl869,103,820 - 69,103,928 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1869,103,838 - 69,103,911 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235235497109969809Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268300000113400000Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277545446111545446Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80909934113419913Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80909934113419913Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80909934113419913Mouse
1357701Lvrq10_mliver weight QTL 10 (mouse)Not determined1280909934113419913Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280909934113419913Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1281022884115022884Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282700137116700137Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283565816117565965Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283565816117565965Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285995320119995424Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286349301114868033Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288086615120129022Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288086615120129022Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288342095120129022Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289697812120129022Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289972772120129022Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290342009120129022Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291256256120129022Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292783591120129022Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292783591120129022Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292969663120129022Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293298027120129022Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294179630120129022Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296896717120129022Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296896717120129022Mouse
10412075Nils1_mneointima lesion size 1 (mouse)Not determined12102060930120129022Mouse
4141297Plyid_mPolymeric IgA dominance (mouse)Not determined109217459115921502Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Rtl1mmu-miR-433-5pMirtarbaseexternal_info5"RACEFunctional MTI (Weak)15854907
Rtl1mmu-miR-433-5pTarbaseexternal_infoOtherPOSITIVE
Rtl1mmu-miR-433-3pMirtarbaseexternal_info5"RACEFunctional MTI (Weak)15854907
Rtl1mmu-miR-433-3pTarbaseexternal_infoOtherPOSITIVE
Rtl1mmu-miR-433-3pMirecordsexternal_infoNANA15854907
Mad2l1mmu-miR-433-3pOncomiRDBexternal_infoNANA22069160

Predicted Targets
Summary Value
Count of predictions:11005
Count of gene targets:5622
Count of transcripts:8576
Interacting mature miRNAs:mmu-miR-433-3p, mmu-miR-433-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000093564
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl12109,591,715 - 109,591,838 (+)Ensembl
RefSeq Acc Id: NR_029952
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912109,558,149 - 109,558,272 (+)NCBI
GRCm3812109,591,715 - 109,591,838 (+)ENTREZGENE
MGSCv3712110,829,925 - 110,830,048 (+)RGD
Celera12110,786,416 - 110,786,539 (+)RGD
cM Map12 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3619404 AgrOrtholog
Ensembl Genes ENSMUSG00000070072 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000093564 ENTREZGENE
MGD MGI:3619404 ENTREZGENE
miRBase MI0001525 ENTREZGENE
NCBI Gene 723937 ENTREZGENE
PhenoGen Mir433 PhenoGen
RNAcentral URS000021534B RNACentral
  URS000024DFCE RNACentral
  URS000025F226 RNACentral