Mir24-2 (microRNA 24-2) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Mir24-2 (microRNA 24-2) Mus musculus
Analyze
Symbol: Mir24-2
Name: microRNA 24-2
RGD ID: 1607563
MGI Page MGI
Description: Exhibits mRNA 3'-UTR binding activity. Involved in several processes, including cellular response to leukemia inhibitory factor; cellular response to phenylalanine; and long-term synaptic potentiation. Is expressed in bone; brain; gut; and limb. Orthologous to human MIR24-2 (microRNA 24-2).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-24-2; Mirn2; Mirn24-2
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,935,444 - 84,935,550 (+)NCBIGRCm39mm39
GRCm38884,208,815 - 84,208,921 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,208,815 - 84,208,921 (+)EnsemblGRCm38mm10GRCm38
MGSCv37886,732,714 - 86,732,820 (+)NCBIGRCm37mm9NCBIm37
Celera888,508,899 - 88,509,005 (+)NCBICelera
Cytogenetic Map8C2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12007417   PMID:12554860   PMID:12919684   PMID:15538371   PMID:16381832   PMID:16682203   PMID:16766679   PMID:16882971   PMID:17369397   PMID:17604727   PMID:17613256   PMID:17726050  
PMID:17936263   PMID:18311128   PMID:18346711   PMID:18762567   PMID:20019669   PMID:20215419   PMID:20413612   PMID:20439489   PMID:20805985   PMID:20807761   PMID:20980664   PMID:21037258  
PMID:21267068   PMID:21536891   PMID:21718763   PMID:22132122   PMID:22564414   PMID:22844247   PMID:23071155   PMID:23307820   PMID:23315977   PMID:23322776   PMID:23418360   PMID:23646144  
PMID:23761103   PMID:23825366   PMID:24049083   PMID:24301787   PMID:24651435   PMID:24824656   PMID:25519956   PMID:25751060   PMID:25858512   PMID:26540574   PMID:26822703   PMID:26834155  
PMID:27625395   PMID:28400445   PMID:28404635   PMID:28973913   PMID:29407889   PMID:29787826   PMID:30242124   PMID:31735332  


Genomics

Comparative Map Data
Mir24-2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,935,444 - 84,935,550 (+)NCBIGRCm39mm39
GRCm38884,208,815 - 84,208,921 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,208,815 - 84,208,921 (+)EnsemblGRCm38mm10GRCm38
MGSCv37886,732,714 - 86,732,820 (+)NCBIGRCm37mm9NCBIm37
Celera888,508,899 - 88,509,005 (+)NCBICelera
Cytogenetic Map8C2NCBI
MIR24-2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1913,836,287 - 13,836,359 (-)EnsemblGRCh38hg38GRCh38
GRCh381913,836,287 - 13,836,359 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371913,947,101 - 13,947,173 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361913,808,100 - 13,808,172 (-)NCBINCBI36hg18NCBI36
Celera1913,840,849 - 13,840,921 (-)NCBI
Cytogenetic Map19p13.12NCBI
HuRef1913,518,669 - 13,518,741 (-)NCBIHuRef
CHM1_11913,947,606 - 13,947,678 (-)NCBICHM1_1
Mir24-2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01925,318,863 - 25,318,970 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,318,863 - 25,318,970 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,295,051 - 36,295,158 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1923,503,531 - 23,503,638 (-)NCBICelera
Cytogenetic Map19q11NCBI
MIR24-2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2048,620,674 - 48,620,745 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12048,620,684 - 48,620,745 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Ece1mmu-miR-24-3pTarbaseexternal_infoSequencingPOSITIVE
Mlecmmu-miR-24-3pTarbaseexternal_infoReporter GeneNEGATIVE
Myef2mmu-miR-24-3pTarbaseexternal_infoqPCRPOSITIVE
Myef2mmu-miR-24-3pTarbaseexternal_infoWesternblitPOSITIVE
Ptpn9mmu-miR-24-3pOncomiRDBexternal_infoNANA23418360
Xiapmmu-miR-24-3pOncomiRDBexternal_infoNANA22733138
Hnf4ammu-miR-24-3pOncomiRDBexternal_infoNANA22153071
S100a8mmu-miR-24-3pOncomiRDBexternal_infoNANA22139384
Furinmmu-miR-24-3pOncomiRDBexternal_infoNANA21402698
Dnd1mmu-miR-24-3pOncomiRDBexternal_infoNANA20816961
Faf1mmu-miR-24-3pOncomiRDBexternal_infoNANA20195546
Dusp16mmu-miR-24-3pOncomiRDBexternal_infoNANA19826043
Prkcammu-miR-24-2-5pOncomiRDBexternal_infoNANA22911661
Apba1mmu-miR-24-3pMirtarbaseexternal_infoWestern blot;qRT-PCRFunctional MTI18353861
Smad3mmu-miR-24-3pMirtarbaseexternal_infoIn situ hybridization//Luciferase reporter assay//Functional MTI19582816
Smad3mmu-miR-24-3pMirtarbaseexternal_infoSequencingFunctional MTI (Weak)19536157
Ankrd52mmu-miR-24-3pMirtarbaseexternal_infoSequencingFunctional MTI (Weak)18353861

Predicted Targets
Summary Value
Count of predictions:28508
Count of gene targets:12340
Count of transcripts:21846
Interacting mature miRNAs:mmu-miR-24-2-5p, mmu-miR-24-3p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083607
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,208,815 - 84,208,921 (+)Ensembl
RefSeq Acc Id: NR_029741
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,935,444 - 84,935,550 (+)NCBI
GRCm38884,208,815 - 84,208,921 (+)ENTREZGENE
MGSCv37886,732,714 - 86,732,820 (+)RGD
Celera888,508,899 - 88,509,005 (+)RGD
cM Map8 ENTREZGENE
Sequence:
Promoters
RGD ID:8667655
Promoter ID:EPDNEW_M11859
Type:single initiation site
Name:Mir24-2_1
Description:Mus musculus microRNA 24-2 (Mir24-2), microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38884,208,898 - 84,208,958EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3618755 AgrOrtholog
Ensembl Genes ENSMUSG00000065541 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083607 ENTREZGENE
MGD MGI:3618755 ENTREZGENE
miRBase MI0000572 ENTREZGENE
NCBI Gene 723960 ENTREZGENE
PhenoGen Mir24-2 PhenoGen
RNAcentral URS00001C4513 RNACentral
  URS000059273E RNACentral
  URS000075D181 RNACentral