Mir24-2 (microRNA 24-2) - Rat Genome Database
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Gene: Mir24-2 (microRNA 24-2) Mus musculus
Analyze
Symbol: Mir24-2
Name: microRNA 24-2
RGD ID: 1607563
MGI Page MGI
Description: Exhibits mRNA 3'-UTR binding activity. Involved in several processes, including cellular response to leukemia inhibitory factor; cellular response to phenylalanine; and long-term synaptic potentiation. Is expressed in bone; brain; gut; and limb. Orthologous to human MIR24-2 (microRNA 24-2).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-24-2; Mirn2; Mirn24-2
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,935,444 - 84,935,550 (+)NCBIGRCm39mm39
GRCm38884,208,815 - 84,208,921 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,208,815 - 84,208,921 (+)EnsemblGRCm38mm10GRCm38
MGSCv37886,732,714 - 86,732,820 (+)NCBIGRCm37mm9NCBIm37
Celera888,508,899 - 88,509,005 (+)NCBICelera
Cytogenetic Map8C2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12007417   PMID:12554860   PMID:12919684   PMID:15538371   PMID:16381832   PMID:16682203   PMID:16766679   PMID:16882971   PMID:17369397   PMID:17604727   PMID:17613256   PMID:17726050  
PMID:17936263   PMID:18311128   PMID:18346711   PMID:18762567   PMID:20019669   PMID:20215419   PMID:20413612   PMID:20439489   PMID:20805985   PMID:20807761   PMID:20980664   PMID:21037258  
PMID:21267068   PMID:21536891   PMID:21718763   PMID:22132122   PMID:22564414   PMID:22844247   PMID:23071155   PMID:23307820   PMID:23315977   PMID:23322776   PMID:23418360   PMID:23646144  
PMID:23761103   PMID:23825366   PMID:24049083   PMID:24301787   PMID:24651435   PMID:24824656   PMID:25519956   PMID:25751060   PMID:25858512   PMID:26540574   PMID:26822703   PMID:26834155  
PMID:27625395   PMID:28400445   PMID:28404635   PMID:28973913   PMID:29407889   PMID:29787826   PMID:30242124   PMID:31735332  


Genomics

Comparative Map Data
Mir24-2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,935,444 - 84,935,550 (+)NCBIGRCm39mm39
GRCm38884,208,815 - 84,208,921 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,208,815 - 84,208,921 (+)EnsemblGRCm38mm10GRCm38
MGSCv37886,732,714 - 86,732,820 (+)NCBIGRCm37mm9NCBIm37
Celera888,508,899 - 88,509,005 (+)NCBICelera
Cytogenetic Map8C2NCBI
MIR24-2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1913,836,287 - 13,836,359 (-)EnsemblGRCh38hg38GRCh38
GRCh381913,836,287 - 13,836,359 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371913,947,101 - 13,947,173 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361913,808,100 - 13,808,172 (-)NCBINCBI36hg18NCBI36
Celera1913,840,849 - 13,840,921 (-)NCBI
Cytogenetic Map19p13.12NCBI
HuRef1913,518,669 - 13,518,741 (-)NCBIHuRef
CHM1_11913,947,606 - 13,947,678 (-)NCBICHM1_1
Mir24-2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01925,318,863 - 25,318,970 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,318,863 - 25,318,970 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,295,051 - 36,295,158 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1923,503,531 - 23,503,638 (-)NCBICelera
Cytogenetic Map19q11NCBI
MIR24-2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2048,620,674 - 48,620,745 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12048,620,684 - 48,620,745 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Ece1mmu-miR-24-3pTarbaseexternal_infoSequencingPOSITIVE
Mlecmmu-miR-24-3pTarbaseexternal_infoReporter GeneNEGATIVE
Myef2mmu-miR-24-3pTarbaseexternal_infoqPCRPOSITIVE
Myef2mmu-miR-24-3pTarbaseexternal_infoWesternblitPOSITIVE
Ptpn9mmu-miR-24-3pOncomiRDBexternal_infoNANA23418360
Xiapmmu-miR-24-3pOncomiRDBexternal_infoNANA22733138
Hnf4ammu-miR-24-3pOncomiRDBexternal_infoNANA22153071
S100a8mmu-miR-24-3pOncomiRDBexternal_infoNANA22139384
Furinmmu-miR-24-3pOncomiRDBexternal_infoNANA21402698
Dnd1mmu-miR-24-3pOncomiRDBexternal_infoNANA20816961
Faf1mmu-miR-24-3pOncomiRDBexternal_infoNANA20195546
Dusp16mmu-miR-24-3pOncomiRDBexternal_infoNANA19826043
Prkcammu-miR-24-2-5pOncomiRDBexternal_infoNANA22911661
Apba1mmu-miR-24-3pMirtarbaseexternal_infoWestern blot;qRT-PCRFunctional MTI18353861
Smad3mmu-miR-24-3pMirtarbaseexternal_infoIn situ hybridization//Luciferase reporter assay//Functional MTI19582816
Smad3mmu-miR-24-3pMirtarbaseexternal_infoSequencingFunctional MTI (Weak)19536157
Ankrd52mmu-miR-24-3pMirtarbaseexternal_infoSequencingFunctional MTI (Weak)18353861

Predicted Targets
Summary Value
Count of predictions:28508
Count of gene targets:12340
Count of transcripts:21846
Interacting mature miRNAs:mmu-miR-24-2-5p, mmu-miR-24-3p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083607
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,208,815 - 84,208,921 (+)Ensembl
RefSeq Acc Id: NR_029741
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,935,444 - 84,935,550 (+)NCBI
GRCm38884,208,815 - 84,208,921 (+)ENTREZGENE
MGSCv37886,732,714 - 86,732,820 (+)RGD
Celera888,508,899 - 88,509,005 (+)RGD
cM Map8 ENTREZGENE
Sequence:
Promoters
RGD ID:8667655
Promoter ID:EPDNEW_M11859
Type:single initiation site
Name:Mir24-2_1
Description:Mus musculus microRNA 24-2 (Mir24-2), microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38884,208,898 - 84,208,958EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3618755 AgrOrtholog
Ensembl Genes ENSMUSG00000065541 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083607 ENTREZGENE
MGD MGI:3618755 ENTREZGENE
miRBase MI0000572 ENTREZGENE
NCBI Gene 723960 ENTREZGENE
PhenoGen Mir24-2 PhenoGen
RNAcentral URS00001C4513 RNACentral
  URS000059273E RNACentral
  URS000075D181 RNACentral