4933406C10Rik (RIKEN cDNA 4933406C10 gene) - Rat Genome Database

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Gene: 4933406C10Rik (RIKEN cDNA 4933406C10 gene) Mus musculus
Analyze
Symbol: 4933406C10Rik
Name: RIKEN cDNA 4933406C10 gene
RGD ID: 1607435
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC74076
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391232,969,383 - 33,003,788 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1232,969,383 - 33,003,838 (-)EnsemblGRCm39 Ensembl
GRCm381232,919,384 - 32,953,789 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1232,919,384 - 32,953,789 (-)EnsemblGRCm38mm10GRCm38
MGSCv371233,604,249 - 33,605,985 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361233,604,249 - 33,605,985 (-)NCBIMGSCv36mm8
Celera1234,364,227 - 34,399,683 (-)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1213.84NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24200680   PMID:27899360  


Genomics

Variants

.
Variants in 4933406C10Rik
1244 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:275
Count of miRNA genes:244
Interacting mature miRNAs:253
Transcripts:ENSMUST00000180391, ENSMUST00000181670
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000180391
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1232,974,956 - 33,003,782 (-)Ensembl
GRCm38.p6 Ensembl1232,924,957 - 32,953,783 (-)Ensembl
RefSeq Acc Id: ENSMUST00000181670
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1232,969,383 - 33,003,788 (-)Ensembl
GRCm38.p6 Ensembl1232,919,384 - 32,953,789 (-)Ensembl
RefSeq Acc Id: ENSMUST00000242182
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1232,974,950 - 33,003,825 (-)Ensembl
RefSeq Acc Id: ENSMUST00000243527
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,002,083 - 33,003,719 (-)Ensembl
RefSeq Acc Id: ENSMUST00000243563
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1233,002,936 - 33,003,828 (-)Ensembl
RefSeq Acc Id: ENSMUST00000243999
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1232,974,954 - 33,003,838 (-)Ensembl
RefSeq Acc Id: ENSMUST00000244586
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1232,996,568 - 33,003,804 (-)Ensembl
RefSeq Acc Id: ENSMUST00000244786
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1232,974,954 - 33,003,776 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245098
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1232,974,954 - 33,003,719 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245778
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1232,969,384 - 33,003,804 (-)Ensembl
RefSeq Acc Id: NR_044986
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391232,969,383 - 33,003,788 (-)NCBI
GRCm381232,919,384 - 32,953,789 (-)ENTREZGENE
Celera1234,364,227 - 34,399,683 (-)ENTREZGENE
cM Map12 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein EDL36887 (Get FASTA)   NCBI Sequence Viewer  

Promoters
RGD ID:15094092
Promoter ID:EPDNEWNC_M1999
Type:initiation region
Name:4933406C10Rik_1
Description:RIKEN cDNA 4933406C10 gene [Source:MGISymbol;Acc:MGI:1921326]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381232,953,783 - 32,953,843EPDNEWNC
RGD ID:8678112
Promoter ID:EPDNEW_M17087
Type:initiation region
Name:4933406C10Rik_1
Description:Mus musculus RIKEN cDNA 4933406C10 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381232,953,825 - 32,953,885EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097494 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000181670 ENTREZGENE
MGD MGI:1921326 ENTREZGENE
NCBI Gene 74076 ENTREZGENE
PhenoGen 4933406C10Rik PhenoGen
RNAcentral URS000075CDA1 RNACentral