0610040F04Rik (RIKEN cDNA 0610040F04 gene) - Rat Genome Database

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Gene: 0610040F04Rik (RIKEN cDNA 0610040F04 gene) Mus musculus
Analyze
Symbol: 0610040F04Rik
Name: RIKEN cDNA 0610040F04 gene
RGD ID: 1607381
MGI Page MGI
Description:
Type: ncrna
RefSeq Status: VALIDATED
Also known as: hypothetical protein LOC75394
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396108,553,997 - 108,637,895 (-)NCBIGRCm39mm39
GRCm39 Ensembl6108,554,000 - 108,637,895 (-)Ensembl
GRCm386108,577,036 - 108,660,934 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6108,577,039 - 108,660,934 (-)EnsemblGRCm38mm10GRCm38
Celera6110,374,778 - 110,462,062 (-)NCBICelera
Cytogenetic Map6E2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:24316575  


Genomics

Position Markers
AI267118  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386108,609,732 - 108,609,840UniSTSGRCm38
MGSCv376108,559,726 - 108,559,834UniSTSGRCm37
Celera6110,408,687 - 110,408,795UniSTS
Cytogenetic Map6E2UniSTS
Whitehead/MRC_RH61108.2UniSTS
UniSTS:224883  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386108,593,709 - 108,593,870UniSTSGRCm38
MGSCv376108,543,703 - 108,543,864UniSTSGRCm37
Celera6110,393,402 - 110,393,563UniSTS
Cytogenetic Map6E2UniSTS
stSG633507  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386108,620,304 - 108,621,615UniSTSGRCm38
MGSCv376108,570,298 - 108,571,609UniSTSGRCm37
Celera6110,419,245 - 110,420,556UniSTS
Cytogenetic Map6E2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse
4141578Obrq1_mobesity resistance QTL 1 (mouse)Not determined92607306112004738Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined695004651129004738Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696347325130347522Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696347325130347522Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96655951146633626Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96655951146633626Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696655951146633626Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698242853132242977Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698506837145935444Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698717516132717715Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698931748132940036Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699155128133155267Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103777444136423692Mouse
12910776Hcga4b_mhome cage activity 4b (mouse)6104503360110960065Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104503360127042975Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104503360136423692Mouse
1357793Pnhdlc1_mplasma non-HDL cholesterol 1 (mouse)Not determined6105564822114368849Mouse
4141699Ibdq2_minflammatory bowel disease QTL 2 (mouse)Not determined106005405120917141Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:144
Count of miRNA genes:123
Interacting mature miRNAs:133
Transcripts:ENSMUST00000137478
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000137478
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6108,577,039 - 108,660,934 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204759
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6108,610,333 - 108,613,995 (-)Ensembl
RefSeq Acc Id: NR_040757
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,587,179 - 108,600,128 (-)NCBI
GRCm386108,610,218 - 108,623,167 (-)NCBI
Celera6110,374,778 - 110,462,062 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_104577
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,553,997 - 108,637,895 (-)NCBI
GRCm386108,577,036 - 108,660,934 (-)NCBI
Celera6110,374,778 - 110,462,062 (-)NCBI
Sequence:
Promoters
RGD ID:6890584
Promoter ID:EPDNEW_M8743
Type:single initiation site
Name:0610040F04Rik_1
Description:Mus musculus RIKEN cDNA 0610040F04 gene , transcript variant2, long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386108,655,211 - 108,655,271EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000087341 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000137478 ENTREZGENE
MGD MGI:1922644 ENTREZGENE
NCBI Gene 75394 ENTREZGENE
PhenoGen 0610040F04Rik PhenoGen
RNAcentral URS000075B000 RNACentral
  URS000075E360 RNACentral