CS (citrate synthase) - Rat Genome Database
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Gene: CS (citrate synthase) Homo sapiens
Analyze
Symbol: CS
Name: citrate synthase
RGD ID: 1606843
HGNC Page HGNC
Description: Exhibits citrate (Si)-synthase activity. Involved in carbohydrate metabolic process. Localizes to mitochondrial matrix.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: citrate (Si)-synthase; citrate synthase, mitochondrial
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Related Pseudogenes: CSP1   CSP2   CSP3   LOC648934  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1256,271,699 - 56,300,391 (-)EnsemblGRCh38hg38GRCh38
GRCh381256,271,699 - 56,300,330 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371256,665,483 - 56,694,175 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,951,750 - 54,980,442 (-)NCBINCBI36hg18NCBI36
Celera1256,318,264 - 56,346,961 (-)NCBI
Cytogenetic Map12q13.3NCBI
HuRef1253,704,180 - 53,732,652 (-)NCBIHuRef
CHM1_11256,632,888 - 56,661,575 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2,2-tetramine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrotoluene  (ISO)
3,4-dihydroxybenzoic acid  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-DAMP(1+)  (ISO)
5-methyl-4-oxido-2-pyrazin-4-iumcarboxylic acid  (EXP)
acrolein  (ISO)
aflatoxin B1  (EXP,ISO)
AM-251  (ISO)
ammonium chloride  (ISO)
aristolochic acid  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
atorvastatin calcium  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzylpenicillin  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (ISO)
butan-1-ol  (EXP)
cadmium dichloride  (EXP,ISO)
captan  (ISO)
carbon nanotube  (ISO)
Chicoric acid  (ISO)
chlorogenic acid  (ISO)
cholesterol  (ISO)
cisplatin  (EXP)
clobetasol  (ISO)
clofibric acid  (ISO)
cobalt dichloride  (EXP,ISO)
corticosterone  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
Deoxycorticosterone acetate  (ISO)
dexamethasone  (EXP)
dicrotophos  (EXP)
dimethyl sulfoxide  (EXP)
dioxygen  (ISO)
dopamine  (EXP)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
ebselen  (EXP)
enzyme inhibitor  (EXP)
erythromycin A  (ISO)
Erythropoietin  (EXP)
ethanol  (EXP)
finasteride  (ISO)
flutamide  (ISO)
folpet  (ISO)
gallic acid  (ISO)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
isoprenaline  (ISO)
josamycin  (EXP)
kaempferol  (ISO)
L-ascorbic acid  (EXP)
methamphetamine  (ISO)
methylmercury chloride  (ISO)
miconazole  (ISO)
N-acetyl-L-cysteine  (EXP,ISO)
N-hexadecanoylsphingosine  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
nitrites  (ISO)
ochratoxin A  (EXP)
ouabain  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenethyl caffeate  (ISO)
phenobarbital  (ISO)
phlorizin  (ISO)
pirinixic acid  (ISO)
quercetin  (ISO)
resveratrol  (EXP,ISO)
sodium chloride  (ISO)
sodium dichromate  (ISO)
sodium fluoride  (ISO)
sucrose  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tauroursodeoxycholic acid  (ISO)
thapsigargin  (ISO)
thimerosal  (EXP)
triclosan  (EXP)
trimellitic anhydride  (ISO)
trovafloxacin  (ISO)
valproic acid  (EXP)
vinclozolin  (ISO)
zidovudine  (EXP)
zinc atom  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Additional References at PubMed
PMID:318158   PMID:7285903   PMID:9543345   PMID:9792662   PMID:9809442   PMID:10383393   PMID:11377425   PMID:12198136   PMID:12477932   PMID:12531911   PMID:12549038   PMID:14702039  
PMID:14743216   PMID:14760703   PMID:15242332   PMID:15489334   PMID:15711981   PMID:15714131   PMID:16274233   PMID:16303743   PMID:16751257   PMID:17298551   PMID:18029348   PMID:19479947  
PMID:19615732   PMID:20458337   PMID:20833797   PMID:20877624   PMID:21081666   PMID:21630459   PMID:21873635   PMID:22304920   PMID:22485150   PMID:22496890   PMID:22658674   PMID:22681889  
PMID:22863883   PMID:23139858   PMID:23246001   PMID:23376485   PMID:23456168   PMID:24711643   PMID:25147182   PMID:25544563   PMID:25921289   PMID:25963833   PMID:26058080   PMID:26344197  
PMID:26361074   PMID:26496610   PMID:26687479   PMID:26972000   PMID:27173435   PMID:27179829   PMID:27363021   PMID:27793029   PMID:28130664   PMID:28161643   PMID:28216161   PMID:28276505  
PMID:28330616   PMID:28391595   PMID:28887308   PMID:28927264   PMID:29117863   PMID:29229926   PMID:29395067   PMID:29467282   PMID:29507755   PMID:29568061   PMID:29845934   PMID:29859926  
PMID:30021884   PMID:30196744   PMID:30463901   PMID:30575818   PMID:30809309   PMID:30948266   PMID:31091453   PMID:31108370   PMID:31141475   PMID:31536960   PMID:31586073   PMID:31620119  
PMID:31980649   PMID:32176628   PMID:32203420   PMID:32694731   PMID:32877691   PMID:33144569  


Genomics

Comparative Map Data
CS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1256,271,699 - 56,300,391 (-)EnsemblGRCh38hg38GRCh38
GRCh381256,271,699 - 56,300,330 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371256,665,483 - 56,694,175 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,951,750 - 54,980,442 (-)NCBINCBI36hg18NCBI36
Celera1256,318,264 - 56,346,961 (-)NCBI
Cytogenetic Map12q13.3NCBI
HuRef1253,704,180 - 53,732,652 (-)NCBIHuRef
CHM1_11256,632,888 - 56,661,575 (-)NCBICHM1_1
Cs
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,173,596 - 128,198,351 (+)NCBIGRCm39mm39
GRCm3810128,337,727 - 128,362,482 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,337,734 - 128,362,479 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710127,774,888 - 127,799,535 (+)NCBIGRCm37mm9NCBIm37
MGSCv3610127,740,781 - 127,765,428 (+)NCBImm8
Celera10130,726,084 - 130,750,750 (+)NCBICelera
Cytogenetic Map10D3NCBI
Cs
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.072,752,680 - 2,778,963 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl72,752,680 - 2,778,963 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.072,731,092 - 2,757,427 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.471,626,181 - 1,652,197 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.171,626,180 - 1,652,197 (+)NCBI
Celera7639,242 - 663,715 (+)NCBICelera
Cytogenetic Map7q11NCBI
Cs
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554583,881,798 - 3,893,401 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554583,881,798 - 3,913,044 (-)NCBIChiLan1.0ChiLan1.0
CS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11232,867,225 - 32,895,854 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1232,867,225 - 32,895,854 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01232,614,982 - 32,643,719 (+)NCBIMhudiblu_PPA_v0panPan3
CS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl10584,904 - 611,436 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.110584,000 - 611,351 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cs
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936646676,926 - 704,988 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,666,510 - 21,700,736 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,669,778 - 21,700,737 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2523,162,491 - 23,186,518 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap5p12-p13NCBI
CS
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,224,667 - 52,253,552 (-)NCBI
ChlSab1.1 Ensembl1152,222,724 - 52,253,307 (-)Ensembl

Position Markers
RH104081  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371256,685,152 - 56,685,294UniSTSGRCh37
Build 361254,971,419 - 54,971,561RGDNCBI36
Celera1256,337,939 - 56,338,081RGD
Cytogenetic Map12q13.2UniSTS
HuRef1253,723,873 - 53,724,015UniSTS
GeneMap99-GB4 RH Map12247.74UniSTS
G64799  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371256,685,200 - 56,685,489UniSTSGRCh37
Build 361254,971,467 - 54,971,756RGDNCBI36
Celera1256,337,987 - 56,338,276RGD
Cytogenetic Map12q13.2UniSTS
HuRef1253,723,921 - 53,724,210UniSTS
RH128613  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371256,667,012 - 56,667,525UniSTSGRCh37
GRCh371918,142,514 - 18,142,695UniSTSGRCh37
Build 361254,953,279 - 54,953,792RGDNCBI36
Celera1256,319,793 - 56,320,306RGD
Celera1918,044,224 - 18,044,405UniSTS
HuRef1917,707,323 - 17,707,504UniSTS
HuRef1253,705,709 - 53,706,222UniSTS
D6S1936  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371918,143,995 - 18,144,204UniSTSGRCh37
GRCh371256,665,515 - 56,665,724UniSTSGRCh37
Build 361254,951,782 - 54,951,991RGDNCBI36
Celera1256,318,296 - 56,318,505RGD
Celera1918,045,705 - 18,045,914UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map12q13.2UniSTS
HuRef1917,708,802 - 17,709,010UniSTS
HuRef1253,704,212 - 53,704,421UniSTS
Whitehead-YAC Contig Map6 UniSTS
D12S1187E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371918,144,076 - 18,144,178UniSTSGRCh37
GRCh371256,665,541 - 56,665,643UniSTSGRCh37
Build 361254,951,808 - 54,951,910RGDNCBI36
Celera1256,318,322 - 56,318,424RGD
Celera1918,045,786 - 18,045,888UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map12q13.2UniSTS
HuRef1917,708,882 - 17,708,984UniSTS
HuRef1253,704,238 - 53,704,340UniSTS
GeneMap99-GB4 RH Map12247.48UniSTS
NCBI RH Map12455.8UniSTS
WI-12459  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371918,141,510 - 18,141,638UniSTSGRCh37
GRCh37263,944,330 - 63,944,458UniSTSGRCh37
Build 36263,797,834 - 63,797,962RGDNCBI36
Celera263,789,357 - 63,789,485RGD
Celera1918,043,221 - 18,043,349UniSTS
Cytogenetic Map12q13.2UniSTS
HuRef263,684,016 - 63,684,144UniSTS
HuRef1917,706,320 - 17,706,448UniSTS
GeneMap99-GB4 RH Map2194.09UniSTS
Whitehead-RH Map2266.8UniSTS
NCBI RH Map2349.4UniSTS
A002P24  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371256,665,514 - 56,665,678UniSTSGRCh37
Build 361254,951,781 - 54,951,945RGDNCBI36
Celera1256,318,295 - 56,318,459RGD
Cytogenetic Map12q13.2UniSTS
HuRef1253,704,211 - 53,704,375UniSTS
GeneMap99-GB4 RH Map12247.74UniSTS
D11S3114  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map3q27.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map15q11.2-q21.3UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map11p15UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map2q12.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map10q11.1UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map11q14.2UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map18q12.1-q21.1UniSTS
Cytogenetic Map2q37UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map6p21.32UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map2q21.3UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map6q27UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map9q21.12UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map3q13.31UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map19p13.1-p12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map5q23.1UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map7q21.1UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map5p13UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map14q24UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map11q13.1-q13.2UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map12p13.1UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map10q23.31UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map10q22.3UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map12p12.2-p11.2UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map11p15.3UniSTS
Cytogenetic Map1p36.11-p34.2UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map20p11.23UniSTS
Cytogenetic Map3q22.3UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map10q11.1-q24UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic MapXp11.22UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic MapXq21.1UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map7q31.1-q31.3UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic MapXq13.1-q21.1UniSTS
Cytogenetic Map20pter-q12UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map15q21-q22UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map4q21.22UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map1q21.2-q21.3UniSTS
Cytogenetic Map9p24.1UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map1q41-q42.2UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map9p23UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map2q37.2UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map2q24.1UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map8p12-p11UniSTS
Cytogenetic Map1q31-q32UniSTS
Cytogenetic Map6q24.1UniSTS
Cytogenetic Map10q24UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map13q32.3UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map3p26.1-p25.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map17q24-q25UniSTS
Cytogenetic Map5q12.1UniSTS
Cytogenetic Map5q15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map8q23.1UniSTS
Cytogenetic Map10p12.31UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic MapXq21UniSTS
Cytogenetic Map6p12UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic Map19qUniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map22q12.3-q13.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map1q24.2UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map14q21.2UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map5p13.3UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map4q21UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map9p22.3UniSTS
Cytogenetic Map8q21.11UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map4p12UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map19q11UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map1p32.2-p32.1UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map4q13.2UniSTS
Cytogenetic Map4q31.23UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map14q24.2UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7453
Count of miRNA genes:1221
Interacting mature miRNAs:1550
Transcripts:ENST00000351328, ENST00000542324, ENST00000546585, ENST00000546621, ENST00000546891, ENST00000546930, ENST00000547283, ENST00000547298, ENST00000547449, ENST00000547912, ENST00000548041, ENST00000548567, ENST00000548746, ENST00000548849, ENST00000549143, ENST00000549221, ENST00000550044, ENST00000550159, ENST00000550655, ENST00000550700, ENST00000550734, ENST00000550996, ENST00000551137, ENST00000551155, ENST00000551253, ENST00000551430, ENST00000551441, ENST00000551473, ENST00000551936, ENST00000551968, ENST00000552222, ENST00000552331, ENST00000552688
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2439 2927 1717 616 1909 457 4357 2175 3692 418 1460 1612 175 1 1204 2788 6 2
Low 64 9 8 42 8 22 42 1 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_004077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC073896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF047042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF053631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF147410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK074956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK095856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK098177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK307625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL713477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC072016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI258893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI553413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT007414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX640838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB990178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ782923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ403132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000351328   ⟹   ENSP00000342056
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,271,699 - 56,300,330 (-)Ensembl
RefSeq Acc Id: ENST00000542324   ⟹   ENSP00000440543
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,272,808 - 56,300,330 (-)Ensembl
RefSeq Acc Id: ENST00000546585
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,274,016 - 56,275,941 (-)Ensembl
RefSeq Acc Id: ENST00000546621
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,273,196 - 56,286,091 (-)Ensembl
RefSeq Acc Id: ENST00000546891   ⟹   ENSP00000446492
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,273,746 - 56,286,008 (-)Ensembl
RefSeq Acc Id: ENST00000546930   ⟹   ENSP00000450403
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,276,147 - 56,300,330 (-)Ensembl
RefSeq Acc Id: ENST00000547283
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,283,792 - 56,300,391 (-)Ensembl
RefSeq Acc Id: ENST00000547298   ⟹   ENSP00000448409
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,282,457 - 56,299,974 (-)Ensembl
RefSeq Acc Id: ENST00000547449
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,282,337 - 56,283,821 (-)Ensembl
RefSeq Acc Id: ENST00000547912
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,282,385 - 56,283,858 (-)Ensembl
RefSeq Acc Id: ENST00000548041   ⟹   ENSP00000447986
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,276,148 - 56,300,315 (-)Ensembl
RefSeq Acc Id: ENST00000548567   ⟹   ENSP00000446779
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,271,701 - 56,300,391 (-)Ensembl
RefSeq Acc Id: ENST00000548746   ⟹   ENSP00000449080
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,271,703 - 56,274,815 (-)Ensembl
RefSeq Acc Id: ENST00000548849   ⟹   ENSP00000449491
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,275,001 - 56,300,376 (-)Ensembl
RefSeq Acc Id: ENST00000549143   ⟹   ENSP00000449571
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,271,699 - 56,300,318 (-)Ensembl
RefSeq Acc Id: ENST00000549221   ⟹   ENSP00000448667
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,276,138 - 56,300,333 (-)Ensembl
RefSeq Acc Id: ENST00000550044
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,286,282 - 56,300,283 (-)Ensembl
RefSeq Acc Id: ENST00000550159   ⟹   ENSP00000447346
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,282,568 - 56,300,334 (-)Ensembl
RefSeq Acc Id: ENST00000550655   ⟹   ENSP00000448172
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,282,472 - 56,300,379 (-)Ensembl
RefSeq Acc Id: ENST00000550700
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,286,239 - 56,300,336 (-)Ensembl
RefSeq Acc Id: ENST00000550734   ⟹   ENSP00000449025
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,276,152 - 56,300,341 (-)Ensembl
RefSeq Acc Id: ENST00000550996
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,286,160 - 56,300,391 (-)Ensembl
RefSeq Acc Id: ENST00000551137   ⟹   ENSP00000449753
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,282,466 - 56,300,316 (-)Ensembl
RefSeq Acc Id: ENST00000551155
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,286,191 - 56,291,758 (-)Ensembl
RefSeq Acc Id: ENST00000551253   ⟹   ENSP00000450101
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,276,164 - 56,300,023 (-)Ensembl
RefSeq Acc Id: ENST00000551430   ⟹   ENSP00000448166
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,282,861 - 56,300,391 (-)Ensembl
RefSeq Acc Id: ENST00000551441
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,286,267 - 56,300,333 (-)Ensembl
RefSeq Acc Id: ENST00000551473   ⟹   ENSP00000449427
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,282,448 - 56,300,023 (-)Ensembl
RefSeq Acc Id: ENST00000551936   ⟹   ENSP00000450312
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,276,152 - 56,300,006 (-)Ensembl
RefSeq Acc Id: ENST00000551968   ⟹   ENSP00000447948
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,282,497 - 56,300,316 (-)Ensembl
RefSeq Acc Id: ENST00000552222   ⟹   ENSP00000447582
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,282,920 - 56,300,317 (-)Ensembl
RefSeq Acc Id: ENST00000552331
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,275,761 - 56,282,510 (-)Ensembl
RefSeq Acc Id: ENST00000552688   ⟹   ENSP00000447442
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1256,282,427 - 56,300,308 (-)Ensembl
RefSeq Acc Id: NM_004077   ⟹   NP_004068
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381256,271,699 - 56,300,330 (-)NCBI
GRCh371256,665,483 - 56,694,175 (-)ENTREZGENE
Build 361254,951,750 - 54,980,442 (-)NCBI Archive
HuRef1253,704,180 - 53,732,652 (-)ENTREZGENE
CHM1_11256,632,888 - 56,661,575 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_004068   ⟸   NM_004077
- Peptide Label: precursor
- UniProtKB: O75390 (UniProtKB/Swiss-Prot),   A0A024RB75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000440543   ⟸   ENST00000542324
RefSeq Acc Id: ENSP00000450403   ⟸   ENST00000546930
RefSeq Acc Id: ENSP00000446492   ⟸   ENST00000546891
RefSeq Acc Id: ENSP00000448409   ⟸   ENST00000547298
RefSeq Acc Id: ENSP00000449491   ⟸   ENST00000548849
RefSeq Acc Id: ENSP00000449080   ⟸   ENST00000548746
RefSeq Acc Id: ENSP00000446779   ⟸   ENST00000548567
RefSeq Acc Id: ENSP00000447986   ⟸   ENST00000548041
RefSeq Acc Id: ENSP00000448667   ⟸   ENST00000549221
RefSeq Acc Id: ENSP00000449571   ⟸   ENST00000549143
RefSeq Acc Id: ENSP00000342056   ⟸   ENST00000351328
RefSeq Acc Id: ENSP00000447346   ⟸   ENST00000550159
RefSeq Acc Id: ENSP00000449025   ⟸   ENST00000550734
RefSeq Acc Id: ENSP00000448172   ⟸   ENST00000550655
RefSeq Acc Id: ENSP00000449753   ⟸   ENST00000551137
RefSeq Acc Id: ENSP00000449427   ⟸   ENST00000551473
RefSeq Acc Id: ENSP00000448166   ⟸   ENST00000551430
RefSeq Acc Id: ENSP00000450101   ⟸   ENST00000551253
RefSeq Acc Id: ENSP00000447948   ⟸   ENST00000551968
RefSeq Acc Id: ENSP00000450312   ⟸   ENST00000551936
RefSeq Acc Id: ENSP00000447582   ⟸   ENST00000552222
RefSeq Acc Id: ENSP00000447442   ⟸   ENST00000552688

Promoters
RGD ID:6789834
Promoter ID:HG_KWN:15900
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000393996,   NM_004077,   UC001SKT.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361254,980,081 - 54,980,677 (-)MPROMDB
RGD ID:6852700
Promoter ID:EP74162
Type:initiation region
Name:HS_CS
Description:Citrate synthase.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Mammalian gene collection (MGC) full-length cDNA cloning
Position:
Human AssemblyChrPosition (strand)Source
Build 361254,980,367 - 54,980,427EPD
RGD ID:7224411
Promoter ID:EPDNEW_H17951
Type:initiation region
Name:CS_3
Description:citrate synthase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H17952  EPDNEW_H17954  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381256,286,044 - 56,286,104EPDNEW
RGD ID:7224415
Promoter ID:EPDNEW_H17952
Type:initiation region
Name:CS_2
Description:citrate synthase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H17951  EPDNEW_H17954  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381256,300,023 - 56,300,083EPDNEW
RGD ID:7224419
Promoter ID:EPDNEW_H17954
Type:initiation region
Name:CS_1
Description:citrate synthase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H17951  EPDNEW_H17952  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381256,300,330 - 56,300,390EPDNEW

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 copy number gain See cases [RCV000258805] Chr12:1..133851895 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic|likely pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 copy number gain See cases [RCV000510482] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) copy number gain See cases [RCV000511643] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3 copy number gain not provided [RCV000750246] Chr12:191619..133777645 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3 copy number gain not provided [RCV000750253] Chr12:621220..133779118 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
NM_004077.3(CS):c.288T>C (p.Phe96=) single nucleotide variant not provided [RCV000903539] Chr12:56282971 [GRCh38]
Chr12:56676755 [GRCh37]
Chr12:12q13.3		 benign
NM_004077.3(CS):c.1388C>T (p.Ser463Phe) single nucleotide variant not provided [RCV000879431] Chr12:56273097 [GRCh38]
Chr12:56666881 [GRCh37]
Chr12:12q13.3		 likely benign
NM_004077.3(CS):c.769C>T (p.Leu257=) single nucleotide variant not provided [RCV000958197] Chr12:56276015 [GRCh38]
Chr12:56669799 [GRCh37]
Chr12:12q13.3		 benign
NM_004077.3(CS):c.174G>A (p.Thr58=) single nucleotide variant not provided [RCV000913012] Chr12:56285943 [GRCh38]
Chr12:56679727 [GRCh37]
Chr12:12q13.3		 likely benign
GRCh37/hg19 12q13.2-14.1(chr12:55552371-62126304)x3 copy number gain not provided [RCV001006505] Chr12:55552371..62126304 [GRCh37]
Chr12:12q13.2-14.1		 pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:2422 AgrOrtholog
COSMIC CS COSMIC
Ensembl Genes ENSG00000062485 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000342056 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000440543 UniProtKB/TrEMBL
  ENSP00000446492 UniProtKB/TrEMBL
  ENSP00000446779 UniProtKB/TrEMBL
  ENSP00000447346 UniProtKB/TrEMBL
  ENSP00000447442 UniProtKB/TrEMBL
  ENSP00000447582 UniProtKB/TrEMBL
  ENSP00000447948 UniProtKB/TrEMBL
  ENSP00000447986 UniProtKB/TrEMBL
  ENSP00000448166 UniProtKB/TrEMBL
  ENSP00000448172 UniProtKB/TrEMBL
  ENSP00000448409 UniProtKB/TrEMBL
  ENSP00000448667 UniProtKB/TrEMBL
  ENSP00000449025 UniProtKB/TrEMBL
  ENSP00000449080 UniProtKB/TrEMBL
  ENSP00000449427 UniProtKB/TrEMBL
  ENSP00000449491 UniProtKB/TrEMBL
  ENSP00000449571 UniProtKB/TrEMBL
  ENSP00000449753 UniProtKB/TrEMBL
  ENSP00000450101 UniProtKB/TrEMBL
  ENSP00000450312 UniProtKB/TrEMBL
  ENSP00000450403 UniProtKB/TrEMBL
Ensembl Transcript ENST00000351328 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000542324 UniProtKB/TrEMBL
  ENST00000546891 UniProtKB/TrEMBL
  ENST00000546930 UniProtKB/TrEMBL
  ENST00000547298 UniProtKB/TrEMBL
  ENST00000548041 UniProtKB/TrEMBL
  ENST00000548567 UniProtKB/TrEMBL
  ENST00000548746 UniProtKB/TrEMBL
  ENST00000548849 UniProtKB/TrEMBL
  ENST00000549143 UniProtKB/TrEMBL
  ENST00000549221 UniProtKB/TrEMBL
  ENST00000550159 UniProtKB/TrEMBL
  ENST00000550655 UniProtKB/TrEMBL
  ENST00000550734 UniProtKB/TrEMBL
  ENST00000551137 UniProtKB/TrEMBL
  ENST00000551253 UniProtKB/TrEMBL
  ENST00000551430 UniProtKB/TrEMBL
  ENST00000551473 UniProtKB/TrEMBL
  ENST00000551936 UniProtKB/TrEMBL
  ENST00000551968 UniProtKB/TrEMBL
  ENST00000552222 UniProtKB/TrEMBL
  ENST00000552688 UniProtKB/TrEMBL
Gene3D-CATH 1.10.230.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.10.580.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000062485 GTEx
HGNC ID HGNC:2422 ENTREZGENE
Human Proteome Map CS Human Proteome Map
InterPro Citrate_synth-like_lrg_a-sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Citrate_synth-like_sm_a-sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Citrate_synthase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Citrate_synthase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Citrate_synthase_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Citrate_synthase_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CNPY UniProtKB/TrEMBL
KEGG Report hsa:1431 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 1431 ENTREZGENE
OMIM 118950 OMIM
PANTHER PTHR11739 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13341 UniProtKB/TrEMBL
Pfam Citrate_synt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA26928 PharmGKB
PRINTS CITRTSNTHASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CITRATE_SYNTHASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48256 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs cit_synth_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A024RB75 ENTREZGENE, UniProtKB/TrEMBL
  A0A0C4DGI3_HUMAN UniProtKB/TrEMBL
  B4DJV2_HUMAN UniProtKB/TrEMBL
  CISY_HUMAN UniProtKB/Swiss-Prot
  F8VPA1_HUMAN UniProtKB/TrEMBL
  F8VPF9_HUMAN UniProtKB/TrEMBL
  F8VR34_HUMAN UniProtKB/TrEMBL
  F8VRI6_HUMAN UniProtKB/TrEMBL
  F8VRP1_HUMAN UniProtKB/TrEMBL
  F8VTT8_HUMAN UniProtKB/TrEMBL
  F8VU34_HUMAN UniProtKB/TrEMBL
  F8VVY4_HUMAN UniProtKB/TrEMBL
  F8VWQ5_HUMAN UniProtKB/TrEMBL
  F8VX07_HUMAN UniProtKB/TrEMBL
  F8VX68_HUMAN UniProtKB/TrEMBL
  F8VZK9_HUMAN UniProtKB/TrEMBL
  F8W0J2_HUMAN UniProtKB/TrEMBL
  F8W1S4_HUMAN UniProtKB/TrEMBL
  F8W4S1_HUMAN UniProtKB/TrEMBL
  F8W642_HUMAN UniProtKB/TrEMBL
  H0YH82_HUMAN UniProtKB/TrEMBL
  H0YIC4_HUMAN UniProtKB/TrEMBL
  O75390 ENTREZGENE
  Q0QEL2_HUMAN UniProtKB/TrEMBL
UniProt Secondary Q71UT9 UniProtKB/Swiss-Prot
  Q7KZH0 UniProtKB/Swiss-Prot
  Q96FZ8 UniProtKB/Swiss-Prot
  Q9BWN8 UniProtKB/Swiss-Prot