RPS27AP2 (RPS27A pseudogene 2) - Rat Genome Database

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Gene: RPS27AP2 (RPS27A pseudogene 2) Homo sapiens
Analyze
Symbol: RPS27AP2
Name: RPS27A pseudogene 2
RGD ID: 1606153
HGNC Page HGNC:16572
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: dJ531H16.4; ribosomal protein S27a pseudogene 2; RPS27A_7_1686
Related Functional Gene: RPS27A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382017,516,793 - 17,517,342 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2017,516,843 - 17,517,307 (+)EnsemblGRCh38hg38GRCh38
GRCh372017,497,438 - 17,497,987 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362017,445,388 - 17,446,052 (+)NCBINCBI36Build 36hg18NCBI36
Celera2017,571,931 - 17,572,472 (+)NCBICelera
Cytogenetic Map20p12.1NCBI
HuRef2017,460,124 - 17,460,665 (+)NCBIHuRef
CHM1_12017,497,480 - 17,498,021 (+)NCBICHM1_1
T2T-CHM13v2.02017,567,460 - 17,568,009 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937   PMID:31819499  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:170
Count of miRNA genes:167
Interacting mature miRNAs:170
Transcripts:ENST00000457576
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 566 466 459 55 228 11 833 332 469 43 545 684 46 174 539
Below cutoff 1435 1674 797 290 836 184 2523 1218 2128 193 680 666 113 788 1581 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000457576
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2017,516,843 - 17,517,307 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPS27AP2 COSMIC
Ensembl Genes ENSG00000232333 Ensembl, ENTREZGENE
GTEx ENSG00000232333 GTEx
HGNC ID HGNC:16572 ENTREZGENE
Human Proteome Map RPS27AP2 Human Proteome Map
NCBI Gene 140752 ENTREZGENE
PharmGKB PA34823 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-05-11 RPS27AP2  RPS27A pseudogene 2  RPS27AP2  ribosomal protein S27a pseudogene 2  Symbol and/or name change 19259463 PROVISIONAL