TEX55 (testis expressed 55) - Rat Genome Database
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Gene: TEX55 (testis expressed 55) Homo sapiens
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Symbol: TEX55
Name: testis expressed 55
RGD ID: 1606145
Description: Predicted to localize to nucleus; INTERACTS WITH aflatoxin B1; arsane; arsenic atom.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: C3orf30; chromosome 3 open reading frame 30; FLJ32859; hypothetical protein LOC152405; testis-specific expressed protein 55; TSCPA; uncharacterized protein C3orf30
Orthologs:
Mus musculus (house mouse) : Tex55 (testis expressed 55)  MGI  Alliance
Rattus norvegicus (Norway rat) : Tex55 (testis expressed 55)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Tex55 (testis expressed 55)
Pan paniscus (bonobo/pygmy chimpanzee) : TEX55 (testis expressed 55)
Canis lupus familiaris (dog) : TEX55 (testis expressed 55)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Tex55 (testis expressed 55)
Sus scrofa (pig) : TEX55 (testis expressed 55)
Chlorocebus sabaeus (African green monkey) : TEX55 (testis expressed 55)
Heterocephalus glaber (naked mole-rat) : Tex55 (testis expressed 55)
more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3119,146,151 - 119,160,042 (+)EnsemblGRCh38hg38GRCh38
GRCh383119,146,165 - 119,151,456 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373118,864,997 - 118,879,674 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363120,347,687 - 120,352,992 (+)NCBINCBI36hg18NCBI36
Celera3117,273,489 - 117,278,794 (+)NCBI
Cytogenetic Map3q13.32NCBI
HuRef3116,240,444 - 116,245,750 (+)NCBIHuRef
CHM1_13118,828,466 - 118,833,771 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,ISS)

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14702039   PMID:19821082   PMID:21873635   PMID:32814053  


Genomics

Comparative Map Data
TEX55
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3119,146,151 - 119,160,042 (+)EnsemblGRCh38hg38GRCh38
GRCh383119,146,165 - 119,151,456 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373118,864,997 - 118,879,674 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363120,347,687 - 120,352,992 (+)NCBINCBI36hg18NCBI36
Celera3117,273,489 - 117,278,794 (+)NCBI
Cytogenetic Map3q13.32NCBI
HuRef3116,240,444 - 116,245,750 (+)NCBIHuRef
CHM1_13118,828,466 - 118,833,771 (+)NCBICHM1_1
Tex55
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391638,632,566 - 38,649,134 (-)NCBI
GRCm381638,812,204 - 38,828,772 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1638,812,206 - 38,828,749 (-)EnsemblGRCm38mm10GRCm38
MGSCv371638,812,318 - 38,828,862 (-)NCBIGRCm37mm9NCBIm37
MGSCv361638,731,537 - 38,748,077 (-)NCBImm8
Celera1639,222,460 - 39,237,745 (-)NCBICelera
Cytogenetic Map16B4NCBI
Tex55
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01164,487,881 - 64,512,042 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1164,488,194 - 64,512,053 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01167,596,591 - 67,622,574 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.11163,759,713 - 63,824,081 (+)NCBI
Celera1161,434,635 - 61,449,761 (+)NCBICelera
Cytogenetic Map11q21NCBI
Tex55
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542718,905,578 - 18,929,842 (+)NCBIChiLan1.0ChiLan1.0
TEX55
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13123,176,860 - 123,190,639 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3123,176,860 - 123,182,061 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03116,264,342 - 116,279,168 (+)NCBIMhudiblu_PPA_v0panPan3
TEX55
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3322,841,431 - 22,855,942 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.13322,841,356 - 22,855,183 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Tex55
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365366,147,905 - 6,179,844 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX55
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.113141,064,655 - 141,068,736 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213150,329,462 - 150,349,843 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TEX55
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12261,689,845 - 61,707,949 (-)NCBI
Tex55
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473129,005,819 - 29,032,699 (-)NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:363
Count of miRNA genes:207
Interacting mature miRNAs:211
Transcripts:ENST00000295622, ENST00000460150, ENST00000473121, ENST00000492792, ENST00000494105
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1 364 1
Low 11 1 9 2 3 1 18 6 4 15 34 31 1 5 8
Below cutoff 546 601 460 102 276 67 830 421 827 137 264 375 37 268 525 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000295622   ⟹   ENSP00000295622
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3119,146,165 - 119,151,456 (+)Ensembl
RefSeq Acc Id: ENST00000460150   ⟹   ENSP00000418207
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3119,146,300 - 119,160,042 (+)Ensembl
RefSeq Acc Id: ENST00000473121   ⟹   ENSP00000419675
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3119,146,813 - 119,151,452 (+)Ensembl
RefSeq Acc Id: ENST00000492792   ⟹   ENSP00000419083
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3119,146,987 - 119,151,313 (+)Ensembl
RefSeq Acc Id: ENST00000494105   ⟹   ENSP00000474929
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl3119,146,151 - 119,160,025 (+)Ensembl
RefSeq Acc Id: NM_152539   ⟹   NP_689752
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383119,146,165 - 119,151,456 (+)NCBI
GRCh373118,864,997 - 118,879,674 (+)NCBI
Build 363120,347,687 - 120,352,992 (+)NCBI Archive
Celera3117,273,489 - 117,278,794 (+)RGD
HuRef3116,240,444 - 116,245,750 (+)ENTREZGENE
CHM1_13118,828,466 - 118,833,771 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_689752 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI30476 (Get FASTA)   NCBI Sequence Viewer  
  AAI44198 (Get FASTA)   NCBI Sequence Viewer  
  BAB71478 (Get FASTA)   NCBI Sequence Viewer  
  EAW79578 (Get FASTA)   NCBI Sequence Viewer  
  Q96M34 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_689752   ⟸   NM_152539
- UniProtKB: Q96M34 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000295622   ⟸   ENST00000295622
RefSeq Acc Id: ENSP00000419083   ⟸   ENST00000492792
RefSeq Acc Id: ENSP00000474929   ⟸   ENST00000494105
RefSeq Acc Id: ENSP00000419675   ⟸   ENST00000473121
RefSeq Acc Id: ENSP00000418207   ⟸   ENST00000460150

Promoters
RGD ID:6865324
Promoter ID:EPDNEW_H5827
Type:multiple initiation site
Name:C3orf30_1
Description:chromosome 3 open reading frame 30
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H5828  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh383119,145,601 - 119,145,661EPDNEW
RGD ID:6865326
Promoter ID:EPDNEW_H5828
Type:initiation region
Name:C3orf30_2
Description:chromosome 3 open reading frame 30
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H5827  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh383119,146,170 - 119,146,230EPDNEW

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 3q11.1-21.1(chr3:93886671-123216683)x1 copy number loss See cases [RCV000051543] Chr3:93886671..123216683 [GRCh38]
Chr3:93605515..122935530 [GRCh37]
Chr3:95088205..124418220 [NCBI36]
Chr3:3q11.1-21.1
pathogenic
GRCh38/hg38 3q13.32-21.2(chr3:119117166-125920734)x1 copy number loss See cases [RCV000051546] Chr3:119117166..125920734 [GRCh38]
Chr3:118836013..125639577 [GRCh37]
Chr3:120318703..127122267 [NCBI36]
Chr3:3q13.32-21.2
pathogenic
GRCh38/hg38 3q13.11-29(chr3:103426882-198110178)x3 copy number gain See cases [RCV000134948] Chr3:103426882..198110178 [GRCh38]
Chr3:103145726..197837049 [GRCh37]
Chr3:104628416..199321446 [NCBI36]
Chr3:3q13.11-29
pathogenic
GRCh38/hg38 3q13.32-13.33(chr3:117844958-120797026)x4 copy number gain See cases [RCV000135591] Chr3:117844958..120797026 [GRCh38]
Chr3:117563805..120515873 [GRCh37]
Chr3:119046495..121998563 [NCBI36]
Chr3:3q13.32-13.33
uncertain significance
GRCh38/hg38 3q13.31-21.1(chr3:115019074-122513398)x1 copy number loss See cases [RCV000135961] Chr3:115019074..122513398 [GRCh38]
Chr3:114737921..122232245 [GRCh37]
Chr3:116220611..123714935 [NCBI36]
Chr3:3q13.31-21.1
pathogenic
GRCh38/hg38 3q13.2-21.3(chr3:112620977-128734134)x1 copy number loss See cases [RCV000139033] Chr3:112620977..128734134 [GRCh38]
Chr3:112339824..128452977 [GRCh37]
Chr3:113822514..129935667 [NCBI36]
Chr3:3q13.2-21.3
pathogenic
GRCh38/hg38 3q13.31-21.2(chr3:114122562-124532374)x1 copy number loss See cases [RCV000142009] Chr3:114122562..124532374 [GRCh38]
Chr3:113841409..124251221 [GRCh37]
Chr3:115324099..125733911 [NCBI36]
Chr3:3q13.31-21.2
pathogenic
GRCh38/hg38 3q11.1-24(chr3:93800620-145695381)x3 copy number gain See cases [RCV000142340] Chr3:93800620..145695381 [GRCh38]
Chr3:93519464..145413168 [GRCh37]
Chr3:95002154..146895858 [NCBI36]
Chr3:3q11.1-24
pathogenic
GRCh38/hg38 3q13.32-13.33(chr3:117844958-120826621)x4 copy number gain See cases [RCV000142877] Chr3:117844958..120826621 [GRCh38]
Chr3:117563805..120545468 [GRCh37]
Chr3:119046495..122028158 [NCBI36]
Chr3:3q13.32-13.33
uncertain significance
GRCh38/hg38 3q13.2-13.33(chr3:112520553-120031022)x1 copy number loss See cases [RCV000142725] Chr3:112520553..120031022 [GRCh38]
Chr3:112239400..119749869 [GRCh37]
Chr3:113722090..121232559 [NCBI36]
Chr3:3q13.2-13.33
pathogenic
GRCh38/hg38 3q13.32-21.3(chr3:118673898-126540730)x1 copy number loss See cases [RCV000143695] Chr3:118673898..126540730 [GRCh38]
Chr3:118392745..126259573 [GRCh37]
Chr3:119875435..127742263 [NCBI36]
Chr3:3q13.32-21.3
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3q13.31-21.1(chr3:115518341-122129283)x1 copy number loss not provided [RCV000682298] Chr3:115518341..122129283 [GRCh37]
Chr3:3q13.31-21.1
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3q13.32(chr3:118733449-118963249)x4 copy number gain not provided [RCV001259227] Chr3:118733449..118963249 [GRCh37]
Chr3:3q13.32
uncertain significance

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:26553 AgrOrtholog
COSMIC TEX55 COSMIC
Ensembl Genes ENSG00000163424 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000295622 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000418207 UniProtKB/TrEMBL
  ENSP00000419083 UniProtKB/TrEMBL
  ENSP00000419675 UniProtKB/TrEMBL
  ENSP00000474929 UniProtKB/TrEMBL
Ensembl Transcript ENST00000295622 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000460150 UniProtKB/TrEMBL
  ENST00000473121 UniProtKB/TrEMBL
  ENST00000492792 UniProtKB/TrEMBL
  ENST00000494105 UniProtKB/TrEMBL
GTEx ENSG00000163424 GTEx
HGNC ID HGNC:26553 ENTREZGENE
Human Proteome Map TEX55 Human Proteome Map
InterPro DUF5582 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:152405 UniProtKB/Swiss-Prot
NCBI Gene 152405 ENTREZGENE
PANTHER PTHR47110 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF5582 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA142672391 PharmGKB
UniGene Hs.730099 ENTREZGENE
UniProt H7C4V1_HUMAN UniProtKB/TrEMBL
  H7C564_HUMAN UniProtKB/TrEMBL
  H7C5E0_HUMAN UniProtKB/TrEMBL
  Q96M34 ENTREZGENE
  S4R404_HUMAN UniProtKB/TrEMBL
  TEX55_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary A1L4B7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-12-25 TEX55  testis expressed 55  C3orf30  chromosome 3 open reading frame 30  Symbol and/or name change 5135510 APPROVED