DYNLT4 (dynein light chain Tctex-type 4) - Rat Genome Database

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Gene: DYNLT4 (dynein light chain Tctex-type 4) Homo sapiens
Analyze
Symbol: DYNLT4
Name: dynein light chain Tctex-type 4
RGD ID: 1606104
HGNC Page HGNC:32315
Description: Enables protein phosphatase 1 binding activity. Predicted to be involved in microtubule-based movement. Located in several cellular components, including acrosomal vesicle; cytoskeleton; and sperm flagellum.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: novel Tctex-1 family domain-containing protein; protein N22.1; tctex-2-beta; Tctex1 domain containing 4; tctex1 domain-containing protein 4; TCTEX1D4; Tctex2 beta
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38144,805,893 - 44,807,351 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl144,805,893 - 44,807,351 (-)EnsemblGRCh38hg38GRCh38
GRCh37145,271,565 - 45,273,023 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36145,044,172 - 45,045,544 (-)NCBINCBI36Build 36hg18NCBI36
Celera143,554,460 - 43,555,837 (-)NCBICelera
Cytogenetic Map1p34.1NCBI
HuRef143,385,192 - 43,385,693 (-)NCBIHuRef
CHM1_1145,387,777 - 45,389,154 (-)NCBICHM1_1
T2T-CHM13v2.0144,677,047 - 44,678,505 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16982625   PMID:21382349   PMID:21873635   PMID:23789093   PMID:24606217   PMID:32296183   PMID:33961781  


Genomics

Comparative Map Data
DYNLT4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38144,805,893 - 44,807,351 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl144,805,893 - 44,807,351 (-)EnsemblGRCh38hg38GRCh38
GRCh37145,271,565 - 45,273,023 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36145,044,172 - 45,045,544 (-)NCBINCBI36Build 36hg18NCBI36
Celera143,554,460 - 43,555,837 (-)NCBICelera
Cytogenetic Map1p34.1NCBI
HuRef143,385,192 - 43,385,693 (-)NCBIHuRef
CHM1_1145,387,777 - 45,389,154 (-)NCBICHM1_1
T2T-CHM13v2.0144,677,047 - 44,678,505 (-)NCBIT2T-CHM13v2.0
Dynlt4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394116,981,734 - 116,985,935 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4116,983,991 - 116,985,935 (+)EnsemblGRCm39 Ensembl
GRCm384117,124,543 - 117,128,738 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4117,126,794 - 117,128,738 (+)EnsemblGRCm38mm10GRCm38
MGSCv374116,799,418 - 116,801,335 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364116,624,745 - 116,626,662 (+)NCBIMGSCv36mm8
Celera4115,864,588 - 115,866,521 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.41NCBI
Dynlt4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85135,842,044 - 135,843,807 (+)NCBIGRCr8
mRatBN7.25130,605,437 - 130,607,224 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5130,605,399 - 130,607,666 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5133,229,887 - 133,231,650 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05134,984,494 - 134,986,257 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05135,006,919 - 135,008,682 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05135,995,128 - 135,997,807 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5135,997,052 - 135,997,711 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05139,789,812 - 139,791,057 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45137,442,867 - 137,443,622 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5129,126,002 - 129,128,681 (+)NCBICelera
Cytogenetic Map5q36NCBI
Dynlt4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546413,417,859 - 13,419,635 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546413,417,735 - 13,419,646 (+)NCBIChiLan1.0ChiLan1.0
DYNLT4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21181,998,563 - 182,001,400 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11181,141,892 - 181,142,893 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0144,110,060 - 44,111,524 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1145,475,939 - 45,477,485 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl145,476,034 - 45,476,705 (-)Ensemblpanpan1.1panPan2
DYNLT4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11515,516,950 - 15,519,137 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1515,518,369 - 15,519,028 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1515,632,730 - 15,639,343 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01515,667,681 - 15,674,543 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1515,673,775 - 15,674,434 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11515,465,160 - 15,471,752 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01515,532,657 - 15,539,274 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01515,605,447 - 15,612,064 (+)NCBIUU_Cfam_GSD_1.0
Dynlt4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505860,207,291 - 60,209,049 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647426,032,109 - 26,032,777 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647426,032,109 - 26,032,777 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DYNLT4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6166,527,350 - 166,528,850 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16166,527,350 - 166,528,855 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26154,050,973 - 154,053,305 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DYNLT4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12087,988,230 - 87,989,578 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2087,988,898 - 87,989,563 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603328,950,875 - 28,951,729 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dynlt4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624906688,800 - 695,888 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624906693,615 - 695,727 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DYNLT4
9 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p34.1(chr1:44713837-45282899)x3 copy number gain See cases [RCV000051129] Chr1:44713837..45282899 [GRCh38]
Chr1:45179509..45748571 [GRCh37]
Chr1:44952096..45521158 [NCBI36]
Chr1:1p34.1		 uncertain significance
GRCh38/hg38 1p34.3-33(chr1:39479787-47688131)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051817]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051817]|See cases [RCV000051817] Chr1:39479787..47688131 [GRCh38]
Chr1:39945459..48153803 [GRCh37]
Chr1:39718046..47926390 [NCBI36]
Chr1:1p34.3-33		 pathogenic
GRCh38/hg38 1p34.3-34.1(chr1:38222737-45636176)x3 copy number gain See cases [RCV000051803] Chr1:38222737..45636176 [GRCh38]
Chr1:38688409..46101848 [GRCh37]
Chr1:38460996..45874435 [NCBI36]
Chr1:1p34.3-34.1		 pathogenic
GRCh38/hg38 1p34.1(chr1:43896056-44867736)x3 copy number gain See cases [RCV000142581] Chr1:43896056..44867736 [GRCh38]
Chr1:44361728..45333408 [GRCh37]
Chr1:44134315..45105995 [NCBI36]
Chr1:1p34.1		 uncertain significance
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12		 likely benign
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
NC_000001.10:g.(?_33241563)_(46663513_?)dup duplication Charcot-Marie-Tooth disease dominant intermediate C [RCV000708276] Chr1:33241563..46663513 [GRCh37]
Chr1:1p35.1-34.1		 uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p34.1(chr1:45237119-45287094)x1 copy number loss not provided [RCV000748971] Chr1:45237119..45287094 [GRCh37]
Chr1:1p34.1		 benign
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3 copy number gain Global developmental delay [RCV000787285] Chr1:103343285..103455144 [GRCh37]
Chr1:1p36.22-21.1		 uncertain significance
NM_001377534.1(DYNLT4):c.503A>G (p.Tyr168Cys) single nucleotide variant Inborn genetic diseases [RCV003249302] Chr1:44806166 [GRCh38]
Chr1:45271838 [GRCh37]
Chr1:1p34.1		 uncertain significance
NC_000001.10:g.(?_33241563)_(46663513_?)dup duplication Charcot-Marie-Tooth disease, dominant intermediate C [RCV001308684] Chr1:33241563..46663513 [GRCh37]
Chr1:1p35.1-34.1		 uncertain significance
NM_001377534.1(DYNLT4):c.631G>C (p.Ala211Pro) single nucleotide variant Neurodevelopmental disorder [RCV001291507] Chr1:44806038 [GRCh38]
Chr1:45271710 [GRCh37]
Chr1:1p34.1		 uncertain significance
GRCh37/hg19 1p35.1-33(chr1:33285582-47891811) copy number gain not specified [RCV002052781] Chr1:33285582..47891811 [GRCh37]
Chr1:1p35.1-33		 pathogenic
GRCh37/hg19 1p34.1(chr1:44346001-46332161)x3 copy number gain See cases [RCV002246181] Chr1:44346001..46332161 [GRCh37]
Chr1:1p34.1		 uncertain significance
NC_000001.10:g.(?_44257753)_(46663493_?)dup duplication Early infantile epileptic encephalopathy with suppression bursts [RCV003109481] Chr1:44257753..46663493 [GRCh37]
Chr1:1p34.1		 uncertain significance
NM_001377534.1(DYNLT4):c.34G>A (p.Glu12Lys) single nucleotide variant Inborn genetic diseases [RCV003264678] Chr1:44806635 [GRCh38]
Chr1:45272307 [GRCh37]
Chr1:1p34.1		 uncertain significance
NM_001377534.1(DYNLT4):c.437C>T (p.Ala146Val) single nucleotide variant Inborn genetic diseases [RCV003217213] Chr1:44806232 [GRCh38]
Chr1:45271904 [GRCh37]
Chr1:1p34.1		 uncertain significance
NM_001377534.1(DYNLT4):c.253C>T (p.Pro85Ser) single nucleotide variant Inborn genetic diseases [RCV003357825] Chr1:44806416 [GRCh38]
Chr1:45272088 [GRCh37]
Chr1:1p34.1		 uncertain significance
NM_001377534.1(DYNLT4):c.388G>T (p.Ala130Ser) single nucleotide variant Inborn genetic diseases [RCV003344316] Chr1:44806281 [GRCh38]
Chr1:45271953 [GRCh37]
Chr1:1p34.1		 uncertain significance
NM_001377534.1(DYNLT4):c.290C>T (p.Pro97Leu) single nucleotide variant Inborn genetic diseases [RCV003369619] Chr1:44806379 [GRCh38]
Chr1:45272051 [GRCh37]
Chr1:1p34.1		 uncertain significance
NM_001377534.1(DYNLT4):c.212G>A (p.Gly71Asp) single nucleotide variant Inborn genetic diseases [RCV003348099] Chr1:44806457 [GRCh38]
Chr1:45272129 [GRCh37]
Chr1:1p34.1		 uncertain significance
Single allele inversion Bilateral polymicrogyria [RCV003459046] Chr1:33246132..61045156 [GRCh38]
Chr1:1p35.1-31.3		 likely pathogenic
NM_001377534.1(DYNLT4):c.246C>T (p.Gly82=) single nucleotide variant not provided [RCV003406454] Chr1:44806423 [GRCh38]
Chr1:45272095 [GRCh37]
Chr1:1p34.1		 likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:562
Count of miRNA genes:264
Interacting mature miRNAs:284
Transcripts:ENST00000339355, ENST00000372200
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-74733  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37145,271,347 - 45,271,569UniSTSGRCh37
Build 36145,043,934 - 45,044,156RGDNCBI36
Celera143,554,227 - 43,554,449RGD
Cytogenetic Map1p34.1UniSTS
HuRef143,384,365 - 43,384,587UniSTS
TNG Radiation Hybrid Map124604.0UniSTS
GeneMap99-GB4 RH Map1140.97UniSTS
SHGC-154623  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37145,274,364 - 45,274,679UniSTSGRCh37
Build 36145,046,951 - 45,047,266RGDNCBI36
Celera143,557,244 - 43,557,559RGD
Cytogenetic Map1p34.1UniSTS
HuRef143,387,100 - 43,387,415UniSTS
TNG Radiation Hybrid Map124590.0UniSTS
CNK_2805  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37145,271,137 - 45,271,661UniSTSGRCh37
Build 36145,043,724 - 45,044,248RGDNCBI36
Celera143,554,017 - 43,554,541RGD
HuRef143,384,155 - 43,384,679UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 6 5 1 10 2 30 81 1
Low 1570 1860 1352 338 1017 195 2352 1015 1045 226 1024 1288 155 835 1423 3
Below cutoff 797 1048 329 253 558 239 1743 1041 1874 167 343 180 14 351 1219 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000339355   ⟹   ENSP00000341803
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl144,805,893 - 44,807,351 (-)Ensembl
RefSeq Acc Id: ENST00000675259   ⟹   ENSP00000501642
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl144,805,893 - 44,807,351 (-)Ensembl
RefSeq Acc Id: NM_001013632   ⟹   NP_001013654
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38144,805,893 - 44,807,351 (-)NCBI
GRCh37145,271,580 - 45,273,378 (-)NCBI
Build 36145,044,172 - 45,045,544 (-)NCBI Archive
Celera143,554,460 - 43,555,837 (-)RGD
HuRef143,385,192 - 43,385,693 (-)ENTREZGENE
CHM1_1145,387,777 - 45,389,154 (-)NCBI
T2T-CHM13v2.0144,677,047 - 44,678,505 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001377534   ⟹   NP_001364463
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38144,805,893 - 44,807,351 (-)NCBI
T2T-CHM13v2.0144,677,047 - 44,678,505 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001377535   ⟹   NP_001364464
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38144,805,893 - 44,807,351 (-)NCBI
T2T-CHM13v2.0144,677,047 - 44,678,505 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001377536   ⟹   NP_001364465
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38144,805,893 - 44,807,351 (-)NCBI
T2T-CHM13v2.0144,677,047 - 44,678,505 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047419617   ⟹   XP_047275573
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38144,805,893 - 44,807,351 (-)NCBI
RefSeq Acc Id: XM_047419618   ⟹   XP_047275574
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38144,805,893 - 44,807,351 (-)NCBI
RefSeq Acc Id: XM_047419619   ⟹   XP_047275575
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38144,805,893 - 44,807,351 (-)NCBI
RefSeq Acc Id: XM_054336368   ⟹   XP_054192343
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0144,677,047 - 44,678,505 (-)NCBI
RefSeq Acc Id: XM_054336369   ⟹   XP_054192344
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0144,677,047 - 44,678,505 (-)NCBI
RefSeq Acc Id: XM_054336370   ⟹   XP_054192345
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0144,677,067 - 44,678,505 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001013654   ⟸   NM_001013632
- UniProtKB: Q5JR98 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001364465   ⟸   NM_001377536
- UniProtKB: Q5JR98 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001364463   ⟸   NM_001377534
- UniProtKB: Q5JR98 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001364464   ⟸   NM_001377535
- UniProtKB: Q5JR98 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSP00000341803   ⟸   ENST00000339355
RefSeq Acc Id: ENSP00000501642   ⟸   ENST00000675259
RefSeq Acc Id: XP_047275573   ⟸   XM_047419617
- Peptide Label: isoform X1
- UniProtKB: Q5JR98 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047275575   ⟸   XM_047419619
- Peptide Label: isoform X1
- UniProtKB: Q5JR98 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047275574   ⟸   XM_047419618
- Peptide Label: isoform X1
- UniProtKB: Q5JR98 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054192343   ⟸   XM_054336368
- Peptide Label: isoform X1
- UniProtKB: Q5JR98 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054192344   ⟸   XM_054336369
- Peptide Label: isoform X1
- UniProtKB: Q5JR98 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054192345   ⟸   XM_054336370
- Peptide Label: isoform X1
- UniProtKB: Q5JR98 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5JR98-F1-model_v2 AlphaFold Q5JR98 1-221 view protein structure

Promoters
RGD ID:6786978
Promoter ID:HG_KWN:2459
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   Jurkat,   K562,   Lymphoblastoid
Transcripts:NM_001013632
Position:
Human AssemblyChrPosition (strand)Source
Build 36145,046,021 - 45,046,521 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:32315 AgrOrtholog
COSMIC DYNLT4 COSMIC
Ensembl Genes ENSG00000188396 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000339355 ENTREZGENE
  ENST00000339355.3 UniProtKB/Swiss-Prot
  ENST00000675259 ENTREZGENE
  ENST00000675259.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.1140.40 UniProtKB/Swiss-Prot
GTEx ENSG00000188396 GTEx
HGNC ID HGNC:32315 ENTREZGENE
Human Proteome Map DYNLT4 Human Proteome Map
InterPro Tctex-1-like UniProtKB/Swiss-Prot
  Tctex-1-like_sf UniProtKB/Swiss-Prot
KEGG Report hsa:343521 UniProtKB/Swiss-Prot
NCBI Gene 343521 ENTREZGENE
OMIM 611713 OMIM
PANTHER DYNEIN LIGHT CHAIN TCTEX-TYPE 4 UniProtKB/Swiss-Prot
  PTHR21255 UniProtKB/Swiss-Prot
Pfam Tctex-1 UniProtKB/Swiss-Prot
UniProt Q5JR98 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-09-21 DYNLT4  dynein light chain Tctex-type 4  TCTEX1D4  Tctex1 domain containing 4  Symbol and/or name change 19259463 PROVISIONAL