VENTXP5 (VENT homeobox pseudogene 5) - Rat Genome Database

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Gene: VENTXP5 (VENT homeobox pseudogene 5) Homo sapiens
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Symbol: VENTXP5
Name: VENT homeobox pseudogene 5
RGD ID: 1606061
HGNC Page HGNC:32214
Description: Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the Vent homeobox gene family. [provided by RefSeq, Jul 2008]
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: VENTX  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38833,721,194 - 33,723,136 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl833,722,305 - 33,723,079 (-)EnsemblGRCh38hg38GRCh38
GRCh37833,578,712 - 33,580,654 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36833,699,346 - 33,700,138 (-)NCBINCBI36Build 36hg18NCBI36
Celera832,528,503 - 32,530,411 (-)NCBICelera
Cytogenetic Map8p12NCBI
HuRef832,109,947 - 32,111,855 (-)NCBIHuRef
CHM1_1833,780,231 - 33,782,139 (-)NCBICHM1_1
T2T-CHM13v2.0833,992,474 - 33,994,416 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:17963489   PMID:22542470  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:276
Count of miRNA genes:261
Interacting mature miRNAs:273
Transcripts:ENST00000523979
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D8Ulb3  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37833,578,300 - 33,578,532UniSTSGRCh37
Celera832,528,105 - 32,528,337UniSTS
HuRef832,109,549 - 32,109,781UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 4 12 11 19 11 31 5 71 7 77 33 1
Below cutoff 53 67 70 19 56 18 127 76 1813 14 350 60 2 30 81

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000523979
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl833,722,305 - 33,723,079 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC VENTXP5 COSMIC
Ensembl Genes ENSG00000253569 Ensembl
GTEx ENSG00000253569 GTEx
HGNC ID HGNC:32214 ENTREZGENE
Human Proteome Map VENTXP5 Human Proteome Map
NCBI Gene 442384 ENTREZGENE
PharmGKB PA142670626 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 VENTXP5  VENT homeobox pseudogene 5  VENTXP5  VENT homeobox (Xenopus laevis) pseudogene 5  Symbol and/or name change 5135510 APPROVED