MEDAG (mesenteric estrogen dependent adipogenesis) - Rat Genome Database

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Gene: MEDAG (mesenteric estrogen dependent adipogenesis) Homo sapiens
Analyze
Symbol: MEDAG
Name: mesenteric estrogen dependent adipogenesis
RGD ID: 1605918
HGNC Page HGNC:25926
Description: Predicted to be involved in positive regulation of fat cell differentiation. Located in cytoplasm.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: activated in W/Wv mouse stomach 3 homolog; AWMS3; C13orf33; FLJ14834; hAWMS3; hypothetical protein LOC84935; MEDA-4; MEDA4; mesenteric estrogen-dependent adipogenesis; mesenteric estrogen-dependent adipogenesis protein; mesenteric estrogen-dependent adipose 4; MGC126673; MGC126675; uncharacterized protein C13orf33
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381330,906,271 - 30,925,572 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1330,906,271 - 30,925,572 (+)EnsemblGRCh38hg38GRCh38
GRCh371331,480,408 - 31,499,709 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361330,378,328 - 30,397,678 (+)NCBINCBI36Build 36hg18NCBI36
Celera1312,546,863 - 12,566,248 (+)NCBICelera
Cytogenetic Map13q12.3NCBI
HuRef1312,291,191 - 12,310,577 (+)NCBIHuRef
CHM1_11331,447,426 - 31,466,813 (+)NCBICHM1_1
T2T-CHM13v2.01330,128,196 - 30,147,488 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IDA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14702039   PMID:15057823   PMID:15489334   PMID:17207965   PMID:21873635   PMID:22510272   PMID:28005267   PMID:30021884   PMID:32296183   PMID:33728329   PMID:35906200  


Genomics

Comparative Map Data
MEDAG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381330,906,271 - 30,925,572 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1330,906,271 - 30,925,572 (+)EnsemblGRCh38hg38GRCh38
GRCh371331,480,408 - 31,499,709 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361330,378,328 - 30,397,678 (+)NCBINCBI36Build 36hg18NCBI36
Celera1312,546,863 - 12,566,248 (+)NCBICelera
Cytogenetic Map13q12.3NCBI
HuRef1312,291,191 - 12,310,577 (+)NCBIHuRef
CHM1_11331,447,426 - 31,466,813 (+)NCBICHM1_1
T2T-CHM13v2.01330,128,196 - 30,147,488 (+)NCBIT2T-CHM13v2.0
Medag
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395149,335,214 - 149,355,188 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5149,335,214 - 149,355,188 (+)EnsemblGRCm39 Ensembl
GRCm385149,367,641 - 149,431,723 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5149,411,749 - 149,431,723 (+)EnsemblGRCm38mm10GRCm38
MGSCv375150,214,381 - 150,234,278 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365149,680,185 - 149,700,082 (+)NCBIMGSCv36mm8
Celera5147,412,123 - 147,432,091 (+)NCBICelera
Cytogenetic Map5G3NCBI
cM Map589.18NCBI
Medag
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81210,649,526 - 10,670,913 (-)NCBIGRCr8
mRatBN7.2125,613,191 - 5,634,583 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl125,613,208 - 5,634,767 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx126,279,708 - 6,300,994 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0126,903,180 - 6,924,463 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0125,930,909 - 5,952,145 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0126,711,745 - 6,730,959 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl126,711,747 - 6,740,714 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0128,808,629 - 8,828,437 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4126,104,957 - 6,126,628 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1126,104,981 - 6,126,628 (-)NCBI
Celera127,371,986 - 7,393,743 (-)NCBICelera
Cytogenetic Map12p11NCBI
Medag
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543114,916,369 - 14,937,385 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543114,918,560 - 14,937,385 (-)NCBIChiLan1.0ChiLan1.0
MEDAG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21430,487,042 - 30,506,616 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11321,593,822 - 21,613,941 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01312,180,622 - 12,200,123 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11330,614,989 - 30,634,048 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1330,614,989 - 30,632,912 (+)Ensemblpanpan1.1panPan2
MEDAG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1259,182,441 - 9,201,235 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,183,443 - 9,200,051 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha259,224,982 - 9,242,610 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,287,047 - 9,305,980 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,287,076 - 9,304,969 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1259,185,976 - 9,203,593 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0259,194,040 - 9,211,661 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0259,236,109 - 9,253,732 (-)NCBIUU_Cfam_GSD_1.0
Medag
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945170,298,447 - 170,317,740 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647225,634,349 - 25,653,823 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647225,634,444 - 25,653,708 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MEDAG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl117,545,494 - 7,562,737 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1117,545,400 - 7,562,741 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2117,396,838 - 7,414,378 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MEDAG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.139,779,644 - 9,799,113 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605734,569,194 - 34,588,583 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Medag
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247767,278,545 - 7,300,602 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247767,280,321 - 7,300,505 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MEDAG
10 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 13q12.3-13.1(chr13:29654134-32858245)x1 copy number loss See cases [RCV000051372] Chr13:29654134..32858245 [GRCh38]
Chr13:30228271..33432383 [GRCh37]
Chr13:29126271..32330383 [NCBI36]
Chr13:13q12.3-13.1
pathogenic
GRCh38/hg38 13q12.3-21.33(chr13:30697728-69471973)x1 copy number loss See cases [RCV000051373] Chr13:30697728..69471973 [GRCh38]
Chr13:31271865..70046105 [GRCh37]
Chr13:30169865..68944106 [NCBI36]
Chr13:13q12.3-21.33
pathogenic
GRCh38/hg38 13q12.11-34(chr13:18946182-114304628)x3 copy number gain See cases [RCV000053726] Chr13:18946182..114304628 [GRCh38]
Chr13:19520322..115070103 [GRCh37]
Chr13:18418322..114088205 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q12.11-12.3(chr13:18958091-31090460)x3 copy number gain See cases [RCV000053729] Chr13:18958091..31090460 [GRCh38]
Chr13:19532231..31664597 [GRCh37]
Chr13:18430231..30562597 [NCBI36]
Chr13:13q12.11-12.3
pathogenic
GRCh38/hg38 13q12.11-34(chr13:19837395-114327173)x3 copy number gain See cases [RCV000053731] Chr13:19837395..114327173 [GRCh38]
Chr13:20411535..115085141 [GRCh37]
Chr13:19309535..114110750 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q12.3-31.1(chr13:30318913-83610426)x3 copy number gain See cases [RCV000053737] Chr13:30318913..83610426 [GRCh38]
Chr13:30893050..84184561 [GRCh37]
Chr13:29791050..83082562 [NCBI36]
Chr13:13q12.3-31.1
pathogenic
GRCh38/hg38 13q11-34(chr13:18565048-114327173)x3 copy number gain See cases [RCV000053719] Chr13:18565048..114327173 [GRCh38]
Chr13:19139188..115085141 [GRCh37]
Chr13:18037188..114110750 [NCBI36]
Chr13:13q11-34
pathogenic
GRCh38/hg38 13q11-13.3(chr13:18676442-37656039)x3 copy number gain See cases [RCV000053721] Chr13:18676442..37656039 [GRCh38]
Chr13:19250582..38230176 [GRCh37]
Chr13:18148582..37128176 [NCBI36]
Chr13:13q11-13.3
pathogenic
GRCh38/hg38 13q11-34(chr13:18850545-114327173)x3 copy number gain See cases [RCV000053723] Chr13:18850545..114327173 [GRCh38]
Chr13:19296527..115085141 [GRCh37]
Chr13:18194527..114110750 [NCBI36]
Chr13:13q11-34
pathogenic
GRCh38/hg38 13q12.11-34(chr13:19833130-114298614)x3 copy number gain See cases [RCV000134104] Chr13:19833130..114298614 [GRCh38]
Chr13:20407270..115064089 [GRCh37]
Chr13:19305270..114082191 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q11-34(chr13:18445862-114327173)x1 copy number loss See cases [RCV000135610] Chr13:18445862..114327173 [GRCh38]
Chr13:19020001..115085141 [GRCh37]
Chr13:10098739..114110750 [NCBI36]
Chr13:13q11-34
pathogenic
GRCh38/hg38 13q12.11-14.11(chr13:19671934-40914767)x3 copy number gain See cases [RCV000137892] Chr13:19671934..40914767 [GRCh38]
Chr13:20246074..41488903 [GRCh37]
Chr13:19144074..40386903 [NCBI36]
Chr13:13q12.11-14.11
pathogenic
GRCh38/hg38 13q12.3-13.3(chr13:29073320-36556014)x1 copy number loss See cases [RCV000137923] Chr13:29073320..36556014 [GRCh38]
Chr13:29647457..37130151 [GRCh37]
Chr13:28545457..36028151 [NCBI36]
Chr13:13q12.3-13.3
pathogenic
GRCh38/hg38 13q12.3-13.3(chr13:30313809-39267681)x1 copy number loss See cases [RCV000139225] Chr13:30313809..39267681 [GRCh38]
Chr13:30887946..39841818 [GRCh37]
Chr13:29785946..38739818 [NCBI36]
Chr13:13q12.3-13.3
pathogenic
GRCh38/hg38 13q12.11-34(chr13:19833130-114327106)x3 copy number gain See cases [RCV000139078] Chr13:19833130..114327106 [GRCh38]
Chr13:20407270..115085141 [GRCh37]
Chr13:19305270..114110683 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q11-34(chr13:18456040-114340285)x3 copy number gain See cases [RCV000140004] Chr13:18456040..114340285 [GRCh38]
Chr13:19030180..115105760 [GRCh37]
Chr13:17928180..114123862 [NCBI36]
Chr13:13q11-34
pathogenic
GRCh38/hg38 13q11-13.2(chr13:18862146-33577351)x3 copy number gain See cases [RCV000141867] Chr13:18862146..33577351 [GRCh38]
Chr13:19436286..34151488 [GRCh37]
Chr13:18334286..33049488 [NCBI36]
Chr13:13q11-13.2
pathogenic
GRCh38/hg38 13q12.11-34(chr13:19671934-114340331)x3 copy number gain See cases [RCV000142924] Chr13:19671934..114340331 [GRCh38]
Chr13:20246074..115085141 [GRCh37]
Chr13:19144074..114123908 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q12.3-13.3(chr13:29321454-36995348)x3 copy number gain See cases [RCV000142869] Chr13:29321454..36995348 [GRCh38]
Chr13:29895591..37569485 [GRCh37]
Chr13:28793591..36467485 [NCBI36]
Chr13:13q12.3-13.3
pathogenic
GRCh38/hg38 13q11-34(chr13:18862146-114342258)x3 copy number gain See cases [RCV000143462] Chr13:18862146..114342258 [GRCh38]
Chr13:19436286..115107733 [GRCh37]
Chr13:18334286..114125835 [NCBI36]
Chr13:13q11-34
pathogenic
GRCh38/hg38 13q12.11-34(chr13:19837395-114327173)x3 copy number gain See cases [RCV000148126] Chr13:19837395..114327173 [GRCh38]
Chr13:20411535..115085141 [GRCh37]
Chr13:19309535..114110750 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh37/hg19 13q12.11-34(chr13:19571503-115092569)x3 copy number gain See cases [RCV000240150] Chr13:19571503..115092569 [GRCh37]
Chr13:13q12.11-34
pathogenic
GRCh37/hg19 13q12.11-34(chr13:19571503-115092510) copy number gain See cases [RCV000449142] Chr13:19571503..115092510 [GRCh37]
Chr13:13q12.11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733)x3 copy number gain See cases [RCV000445886] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436287-115107733) copy number gain See cases [RCV000510405] Chr13:19436287..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436287-115107733)x3 copy number gain See cases [RCV000511880] Chr13:19436287..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
NM_032849.4(MEDAG):c.577G>T (p.Ala193Ser) single nucleotide variant Inborn genetic diseases [RCV003307005] Chr13:30921636 [GRCh38]
Chr13:31495773 [GRCh37]
Chr13:13q12.3
uncertain significance
GRCh37/hg19 13q12.12-13.2(chr13:24080918-34361992)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626443] Chr13:24080918..34361992 [GRCh37]
Chr13:13q12.12-13.2
drug response
GRCh37/hg19 13q11-22.1(chr13:19436286-74045459)x3 copy number gain not provided [RCV000683572] Chr13:19436286..74045459 [GRCh37]
Chr13:13q11-22.1
pathogenic
GRCh37/hg19 13q11-34(chr13:19058717-115103529)x3 copy number gain not provided [RCV000738115] Chr13:19058717..115103529 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19031237-115107157)x3 copy number gain not provided [RCV000750643] Chr13:19031237..115107157 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733)x3 copy number gain not provided [RCV000849129] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q12.3(chr13:31498706-31566543)x1 copy number loss not provided [RCV001006556] Chr13:31498706..31566543 [GRCh37]
Chr13:13q12.3
uncertain significance
NM_032849.4(MEDAG):c.233T>A (p.Val78Glu) single nucleotide variant Inborn genetic diseases [RCV003269969] Chr13:30906748 [GRCh38]
Chr13:31480885 [GRCh37]
Chr13:13q12.3
uncertain significance
GRCh37/hg19 13q12.3-13.2(chr13:28925153-34061696)x1 copy number loss not provided [RCV001537908] Chr13:28925153..34061696 [GRCh37]
Chr13:13q12.3-13.2
pathogenic
GRCh37/hg19 13p13-q34(chr13:1-115169878) copy number gain Complete trisomy 13 syndrome [RCV002280659] Chr13:1..115169878 [GRCh37]
Chr13:13p13-q34
pathogenic
GRCh37/hg19 13q11-34(chr13:19053605-115108528)x3 copy number gain See cases [RCV001353184] Chr13:19053605..115108528 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13p13-q34(chr13:1-115169878)x3 copy number gain See cases [RCV001780076] Chr13:1..115169878 [GRCh37]
Chr13:13p13-q34
pathogenic
GRCh38/hg38 13q12.3(chr13:30194283-31591879) copy number loss Diaphragmatic hernia [RCV001823064] Chr13:30194283..31591879 [GRCh38]
Chr13:13q12.3
uncertain significance
GRCh37/hg19 13q11-34(chr13:19436286-114981726) copy number gain not specified [RCV002053035] Chr13:19436286..114981726 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733) copy number gain not specified [RCV002053036] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733)x3 copy number gain not provided [RCV001834436] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
NC_000013.10:g.(?_31033232)_(33638323_?)dup duplication not provided [RCV003113598] Chr13:31033232..33638323 [GRCh37]
Chr13:13q12.3-13.1
uncertain significance
GRCh37/hg19 13q11-34(chr13:19253848-115108937)x3 copy number gain not provided [RCV002291540] Chr13:19253848..115108937 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q12.3(chr13:31267070-31483281)x3 copy number gain not provided [RCV002472479] Chr13:31267070..31483281 [GRCh37]
Chr13:13q12.3
uncertain significance
NM_032849.4(MEDAG):c.73C>A (p.Leu25Met) single nucleotide variant Inborn genetic diseases [RCV002685254] Chr13:30906588 [GRCh38]
Chr13:31480725 [GRCh37]
Chr13:13q12.3
uncertain significance
NM_032849.4(MEDAG):c.750C>A (p.Ser250Arg) single nucleotide variant Inborn genetic diseases [RCV002992760] Chr13:30921809 [GRCh38]
Chr13:31495946 [GRCh37]
Chr13:13q12.3
uncertain significance
NM_032849.4(MEDAG):c.413A>T (p.Asn138Ile) single nucleotide variant Inborn genetic diseases [RCV002849584] Chr13:30921038 [GRCh38]
Chr13:31495175 [GRCh37]
Chr13:13q12.3
uncertain significance
NM_032849.4(MEDAG):c.479T>C (p.Ile160Thr) single nucleotide variant Inborn genetic diseases [RCV002783000] Chr13:30921104 [GRCh38]
Chr13:31495241 [GRCh37]
Chr13:13q12.3
uncertain significance
NM_032849.4(MEDAG):c.650T>C (p.Val217Ala) single nucleotide variant Inborn genetic diseases [RCV002697014] Chr13:30921709 [GRCh38]
Chr13:31495846 [GRCh37]
Chr13:13q12.3
uncertain significance
NM_032849.4(MEDAG):c.733C>G (p.Pro245Ala) single nucleotide variant Inborn genetic diseases [RCV002673341] Chr13:30921792 [GRCh38]
Chr13:31495929 [GRCh37]
Chr13:13q12.3
uncertain significance
NM_032849.4(MEDAG):c.244G>A (p.Gly82Arg) single nucleotide variant Inborn genetic diseases [RCV003352118] Chr13:30906759 [GRCh38]
Chr13:31480896 [GRCh37]
Chr13:13q12.3
uncertain significance
NM_032849.4(MEDAG):c.396G>A (p.Thr132=) single nucleotide variant not provided [RCV003390349] Chr13:30921021 [GRCh38]
Chr13:31495158 [GRCh37]
Chr13:13q12.3
likely benign
GRCh37/hg19 13q12.3-13.1(chr13:29933399-32792968)x3 copy number gain not provided [RCV003885456] Chr13:29933399..32792968 [GRCh37]
Chr13:13q12.3-13.1
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:521
Count of miRNA genes:425
Interacting mature miRNAs:466
Transcripts:ENST00000380482, ENST00000428944
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D13S1229  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371331,484,262 - 31,484,396UniSTSGRCh37
Build 361330,382,262 - 30,382,396RGDNCBI36
Celera1312,550,812 - 12,550,947RGD
Cytogenetic Map13q12.3UniSTS
HuRef1312,295,144 - 12,295,280UniSTS
Marshfield Genetic Map1321.51RGD
Marshfield Genetic Map1321.51UniSTS
Genethon Genetic Map1323.5UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 2 32 25 3 11 23
Medium 1571 1709 782 127 125 8 3246 1238 725 75 652 1066 125 1 1193 2135 3
Low 728 645 656 228 454 184 1016 911 1318 264 703 353 44 630 2
Below cutoff 40 583 259 245 817 247 17 17 1620 47 39 62 1 1

Sequence


RefSeq Acc Id: ENST00000380482   ⟹   ENSP00000369849
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1330,906,271 - 30,925,572 (+)Ensembl
RefSeq Acc Id: ENST00000428944   ⟹   ENSP00000416838
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1330,906,706 - 30,924,449 (+)Ensembl
RefSeq Acc Id: NM_032849   ⟹   NP_116238
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381330,906,271 - 30,925,572 (+)NCBI
GRCh371331,480,312 - 31,499,709 (+)RGD
Build 361330,378,328 - 30,397,678 (+)NCBI Archive
Celera1312,546,863 - 12,566,248 (+)RGD
HuRef1312,291,191 - 12,310,577 (+)RGD
CHM1_11331,447,426 - 31,466,813 (+)NCBI
T2T-CHM13v2.01330,128,196 - 30,147,488 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017020801   ⟹   XP_016876290
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381330,917,879 - 30,925,572 (+)NCBI
Sequence:
RefSeq Acc Id: XM_054375073   ⟹   XP_054231048
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01330,139,795 - 30,147,488 (+)NCBI
RefSeq Acc Id: NP_116238   ⟸   NM_032849
- UniProtKB: Q96K26 (UniProtKB/Swiss-Prot),   Q8IXF1 (UniProtKB/Swiss-Prot),   Q5VYS4 (UniProtKB/Swiss-Prot),   Q96NC8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016876290   ⟸   XM_017020801
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSP00000416838   ⟸   ENST00000428944
RefSeq Acc Id: ENSP00000369849   ⟸   ENST00000380482
RefSeq Acc Id: XP_054231048   ⟸   XM_054375073
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5VYS4-F1-model_v2 AlphaFold Q5VYS4 1-303 view protein structure

Promoters
RGD ID:7226163
Promoter ID:EPDNEW_H18827
Type:multiple initiation site
Name:MEDAG_1
Description:mesenteric estrogen dependent adipogenesis
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H18825  EPDNEW_H18826  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381330,906,278 - 30,906,338EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:25926 AgrOrtholog
COSMIC MEDAG COSMIC
Ensembl Genes ENSG00000102802 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000380482 ENTREZGENE
  ENST00000380482.9 UniProtKB/Swiss-Prot
  ENST00000428944.1 UniProtKB/TrEMBL
GTEx ENSG00000102802 GTEx
HGNC ID HGNC:25926 ENTREZGENE
Human Proteome Map MEDAG Human Proteome Map
InterPro MEDAG/TEX26 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:84935 UniProtKB/Swiss-Prot
NCBI Gene 84935 ENTREZGENE
PANTHER PTHR33769 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR33769:SF3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA147358556 PharmGKB
UniProt H0Y831_HUMAN UniProtKB/TrEMBL
  MEDAG_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q8IXF1 ENTREZGENE
  Q96K26 ENTREZGENE
  Q96NC8 ENTREZGENE
UniProt Secondary Q8IXF1 UniProtKB/Swiss-Prot
  Q96K26 UniProtKB/Swiss-Prot
  Q96NC8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-12 MEDAG  mesenteric estrogen dependent adipogenesis    mesenteric estrogen-dependent adipogenesis  Symbol and/or name change 5135510 APPROVED
2012-10-02 MEDAG  mesenteric estrogen-dependent adipogenesis  C13orf33  chromosome 13 open reading frame 33  Symbol and/or name change 5135510 APPROVED