RPL7P6 (ribosomal protein L7 pseudogene 6) - Rat Genome Database

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Gene: RPL7P6 (ribosomal protein L7 pseudogene 6) Homo sapiens
Analyze
Symbol: RPL7P6
Name: ribosomal protein L7 pseudogene 6
RGD ID: 1605905
HGNC Page HGNC:32430
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL7_20_1216
Related Functional Gene: RPL7  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381219,089,131 - 19,089,951 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1219,089,151 - 19,089,888 (+)EnsemblGRCh38hg38GRCh38
GRCh371219,242,065 - 19,242,885 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361219,132,673 - 19,134,258 (+)NCBINCBI36Build 36hg18NCBI36
Celera1224,387,538 - 24,388,358 (+)NCBICelera
Cytogenetic Map12p12.3NCBI
HuRef1219,011,092 - 19,011,912 (+)NCBIHuRef
CHM1_11219,207,546 - 19,208,366 (+)NCBICHM1_1
T2T-CHM13v2.01218,965,845 - 18,966,662 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:165
Count of miRNA genes:82
Interacting mature miRNAs:83
Transcripts:ENST00000449390, ENST00000480903
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-146112  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371219,241,214 - 19,241,526UniSTSGRCh37
Build 361219,132,481 - 19,132,793RGDNCBI36
Celera1224,386,687 - 24,386,999RGD
Cytogenetic Map12p12.3UniSTS
HuRef1219,010,241 - 19,010,553UniSTS
TNG Radiation Hybrid Map128319.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 179 172 167 60 192 56 558 76 181 90 322 230 4 119 300
Below cutoff 1932 2058 1213 377 1009 245 3359 1744 2548 246 925 1132 142 990 2189 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000480903
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1219,089,151 - 19,089,888 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL7P6 COSMIC
Ensembl Genes ENSG00000227525 Ensembl, ENTREZGENE
GTEx ENSG00000227525 GTEx
HGNC ID HGNC:32430 ENTREZGENE
Human Proteome Map RPL7P6 Human Proteome Map
NCBI Gene 90193 ENTREZGENE
PharmGKB PA142671046 PharmGKB