CSPG4P5 (chondroitin sulfate proteoglycan 4 pseudogene 5) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: CSPG4P5 (chondroitin sulfate proteoglycan 4 pseudogene 5) Homo sapiens
Analyze
Symbol: CSPG4P5
Name: chondroitin sulfate proteoglycan 4 pseudogene 5
RGD ID: 1605891
HGNC Page HGNC:29403
Description:
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: DNM1P51; dynamin 1 pseudogene 51; KIAA1920
Related Functional Gene: CSPG4  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381584,402,446 - 84,406,168 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1584,401,807 - 84,408,005 (-)EnsemblGRCh38hg38GRCh38
GRCh371584,953,014 - 84,966,399 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361582,744,017 - 82,757,402 (-)NCBINCBI36Build 36hg18NCBI36
Celera1559,705,890 - 59,712,721 (+)NCBICelera
Cytogenetic Map15q25.2NCBI
HuRef1561,136,277 - 61,147,937 (-)NCBIHuRef
CHM1_11584,695,322 - 84,708,361 (-)NCBICHM1_1
T2T-CHM13v2.01582,133,636 - 82,137,358 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11572484  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:478
Count of miRNA genes:229
Interacting mature miRNAs:238
Transcripts:ENST00000456932, ENST00000558801
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
G66495  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15q25.2UniSTS
G66502  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15q25.2UniSTS
GDB:315469  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15q25.2UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 2 1 2 2 1 3 1 1 2
Below cutoff 3 3 8 3 11 14 3 13 7

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000558149
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1584,398,990 - 84,401,731 (-)Ensembl
RefSeq Acc Id: ENST00000558731
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1584,401,807 - 84,408,005 (-)Ensembl
RefSeq Acc Id: ENST00000558801
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1584,398,316 - 84,411,701 (-)Ensembl
Protein Sequences
GenBank Protein BAB67813 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC CSPG4P5 COSMIC
Ensembl Genes ENSG00000235370 Ensembl
  ENSG00000272887 Ensembl
GTEx ENSG00000235370 GTEx
  ENSG00000272887 GTEx
HGNC ID HGNC:29403 ENTREZGENE
Human Proteome Map CSPG4P5 Human Proteome Map
NCBI Gene 114817 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-02-24 CSPG4P5  chondroitin sulfate proteoglycan 4 pseudogene 5  DNM1P51  dynamin 1 pseudogene 51  Data merged from RGD:15037021 737654 PROVISIONAL
2011-07-27 CSPG4P5  chondroitin sulfate proteoglycan 4 pseudogene 5  KIAA1920  KIAA1920 protein  Symbol and/or name change 5135510 APPROVED