ZNF704 (zinc finger protein 704) - Rat Genome Database

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Gene: ZNF704 (zinc finger protein 704) Homo sapiens
Analyze
Symbol: ZNF704
Name: zinc finger protein 704
RGD ID: 1605749
HGNC Page HGNC:32291
Description: Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FLJ16218; Gig1; MGC10858
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38880,628,451 - 80,884,419 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl880,628,451 - 80,874,781 (-)EnsemblGRCh38hg38GRCh38
GRCh37881,540,686 - 81,787,016 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36881,713,324 - 81,949,571 (-)NCBINCBI36Build 36hg18NCBI36
Celera877,545,653 - 77,791,981 (-)NCBICelera
Cytogenetic Map8q21.13NCBI
HuRef877,030,566 - 77,276,549 (-)NCBIHuRef
CHM1_1881,592,911 - 81,839,267 (-)NCBICHM1_1
T2T-CHM13v2.0881,060,029 - 81,315,991 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:21873635   PMID:25332235   PMID:26091241   PMID:28473536   PMID:28514442   PMID:28611215   PMID:29507755   PMID:30021884   PMID:31376183   PMID:32296183  
PMID:32651256   PMID:33961781  


Genomics

Comparative Map Data
ZNF704
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38880,628,451 - 80,884,419 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl880,628,451 - 80,874,781 (-)EnsemblGRCh38hg38GRCh38
GRCh37881,540,686 - 81,787,016 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36881,713,324 - 81,949,571 (-)NCBINCBI36Build 36hg18NCBI36
Celera877,545,653 - 77,791,981 (-)NCBICelera
Cytogenetic Map8q21.13NCBI
HuRef877,030,566 - 77,276,549 (-)NCBIHuRef
CHM1_1881,592,911 - 81,839,267 (-)NCBICHM1_1
T2T-CHM13v2.0881,060,029 - 81,315,991 (-)NCBIT2T-CHM13v2.0
Zfp704
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3939,492,070 - 9,675,145 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl39,492,080 - 9,675,145 (-)EnsemblGRCm39 Ensembl
GRCm3839,427,010 - 9,610,085 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl39,427,020 - 9,610,085 (-)EnsemblGRCm38mm10GRCm38
MGSCv3739,427,010 - 9,610,085 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3639,410,096 - 9,593,158 (-)NCBIMGSCv36mm8
Celera39,446,697 - 9,631,510 (-)NCBICelera
Cytogenetic Map3A1NCBI
cM Map32.31NCBI
Zfp704
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8294,079,209 - 94,267,071 (+)NCBIGRCr8
mRatBN7.2292,171,804 - 92,356,059 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl292,171,496 - 92,351,282 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0294,377,059 - 94,559,838 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl294,377,072 - 94,551,529 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02114,131,522 - 114,316,455 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4294,202,644 - 94,394,132 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera287,805,129 - 87,948,306 (+)NCBICelera
Cytogenetic Map2q23NCBI
Znf704
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955444748,641 - 880,802 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955444748,837 - 880,802 (+)NCBIChiLan1.0ChiLan1.0
ZNF704
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2796,369,477 - 96,614,271 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1871,997,260 - 72,242,026 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0877,158,942 - 77,399,102 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1878,778,284 - 79,022,473 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl878,790,357 - 79,022,513 (-)Ensemblpanpan1.1panPan2
ZNF704
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12927,896,826 - 28,116,001 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2927,897,072 - 28,075,015 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2928,139,076 - 28,397,077 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02927,988,474 - 28,247,546 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2928,022,536 - 28,247,546 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12928,043,375 - 28,300,594 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02928,073,989 - 28,332,196 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02928,429,478 - 28,689,043 (-)NCBIUU_Cfam_GSD_1.0
Znf704
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530351,016,847 - 51,225,687 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366563,224,420 - 3,404,255 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366563,207,362 - 3,416,202 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF704
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl455,739,149 - 56,003,068 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1455,739,031 - 56,015,492 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2461,040,848 - 61,104,134 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF704
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1876,063,488 - 76,311,154 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl876,076,400 - 76,316,208 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603964,882,981 - 65,130,454 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf704
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474410,552,851 - 10,746,603 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474410,552,836 - 10,758,556 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZNF704
24 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145049449)x3 copy number gain See cases [RCV000051206] Chr8:241530..145049449 [GRCh38]
Chr8:191530..146274835 [GRCh37]
Chr8:181530..146245639 [NCBI36]
Chr8:8p23.3-q24.3		 pathogenic
GRCh38/hg38 8q21.11-21.13(chr8:73519300-82655582)x1 copy number loss See cases [RCV000051117] Chr8:73519300..82655582 [GRCh38]
Chr8:74431535..83567817 [GRCh37]
Chr8:74594089..83730372 [NCBI36]
Chr8:8q21.11-21.13		 pathogenic
GRCh38/hg38 8q12.3-21.13(chr8:61691800-82537696)x3 copy number gain See cases [RCV000053654] Chr8:61691800..82537696 [GRCh38]
Chr8:62604359..83449931 [GRCh37]
Chr8:62766913..83612486 [NCBI36]
Chr8:8q12.3-21.13		 pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000053602] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3		 pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:244417-145054775)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|See cases [RCV000053604] Chr8:244417..145054775 [GRCh38]
Chr8:194417..146280161 [GRCh37]
Chr8:184417..146250965 [NCBI36]
Chr8:8p23.3-q24.3		 pathogenic
GRCh38/hg38 8q21.11-21.2(chr8:73879385-85611466)x1 copy number loss See cases [RCV000054259] Chr8:73879385..85611466 [GRCh38]
Chr8:74791620..86523695 [GRCh37]
Chr8:74954174..86710947 [NCBI36]
Chr8:8q21.11-21.2		 pathogenic
GRCh38/hg38 8q21.13-21.3(chr8:77765431-91839285)x1 copy number loss See cases [RCV000054261] Chr8:77765431..91839285 [GRCh38]
Chr8:78677666..92851513 [GRCh37]
Chr8:78840221..92920689 [NCBI36]
Chr8:8q21.13-21.3		 pathogenic
GRCh38/hg38 8q21.13-22.1(chr8:78672463-95366868)x1 copy number loss See cases [RCV000054262] Chr8:78672463..95366868 [GRCh38]
Chr8:79584698..96379096 [GRCh37]
Chr8:79747253..96448272 [NCBI36]
Chr8:8q21.13-22.1		 pathogenic
GRCh37/hg19 8q13.2-24.3(chr8:68912432-146295771)x2 copy number gain See cases [RCV002292707] Chr8:68912432..146295771 [GRCh37]
Chr8:8q13.2-24.3		 pathogenic
GRCh38/hg38 8q21.13(chr8:74905308-81339951)x1 copy number loss See cases [RCV000133719] Chr8:74905308..81339951 [GRCh38]
Chr8:75817543..82252186 [GRCh37]
Chr8:75980098..82414741 [NCBI36]
Chr8:8q21.13		 pathogenic
GRCh38/hg38 8q13.1-22.1(chr8:66171669-93505509)x3 copy number gain See cases [RCV000137050] Chr8:66171669..93505509 [GRCh38]
Chr8:67083904..94517737 [GRCh37]
Chr8:67246458..94586913 [NCBI36]
Chr8:8q13.1-22.1		 pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241605-145054781)x3 copy number gain See cases [RCV000138643] Chr8:241605..145054781 [GRCh38]
Chr8:191605..146280167 [GRCh37]
Chr8:181605..146250971 [NCBI36]
Chr8:8p23.3-q24.3		 pathogenic
GRCh38/hg38 8q21.13-24.3(chr8:77480050-145068712)x3 copy number gain See cases [RCV000139036] Chr8:77480050..145068712 [GRCh38]
Chr8:78392286..146294098 [GRCh37]
Chr8:78554841..146264902 [NCBI36]
Chr8:8q21.13-24.3		 pathogenic
GRCh38/hg38 8q11.1-24.3(chr8:46031340-139285494)x3 copy number gain See cases [RCV000139539] Chr8:46031340..139285494 [GRCh38]
Chr8:46942962..140297737 [GRCh37]
Chr8:47062127..140366919 [NCBI36]
Chr8:8q11.1-24.3		 pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:208048-145070385)x3 copy number gain See cases [RCV000141808] Chr8:208048..145070385 [GRCh38]
Chr8:158048..146295771 [GRCh37]
Chr8:148048..146266575 [NCBI36]
Chr8:8p23.3-q24.3		 pathogenic
GRCh38/hg38 8p21.3-q24.3(chr8:21291522-145070385)x3 copy number gain See cases [RCV000142021] Chr8:21291522..145070385 [GRCh38]
Chr8:21149033..146295771 [GRCh37]
Chr8:21193313..146266575 [NCBI36]
Chr8:8p21.3-q24.3		 pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:226452-145068712)x3 copy number gain See cases [RCV000142858] Chr8:226452..145068712 [GRCh38]
Chr8:176452..146294098 [GRCh37]
Chr8:166452..146264902 [NCBI36]
Chr8:8p23.3-q24.3		 pathogenic
GRCh38/hg38 8q21.13-24.3(chr8:78614077-145054634)x3 copy number gain See cases [RCV000142597] Chr8:78614077..145054634 [GRCh38]
Chr8:79526312..146280020 [GRCh37]
Chr8:79688867..146250824 [NCBI36]
Chr8:8q21.13-24.3		 pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000148092] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3		 pathogenic
GRCh37/hg19 8q13.3-21.13(chr8:70971013-82019151)x3 copy number gain See cases [RCV000240367] Chr8:70971013..82019151 [GRCh37]
Chr8:8q13.3-21.13		 likely pathogenic
GRCh37/hg19 8p12-q24.3(chr8:31936551-146295771)x3 copy number gain not provided [RCV000848192] Chr8:31936551..146295771 [GRCh37]
Chr8:8p12-q24.3		 pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158991-146280828)x3 copy number gain See cases [RCV000447507] Chr8:158991..146280828 [GRCh37]
Chr8:8p23.3-q24.3		 pathogenic
GRCh37/hg19 8q21.11-21.13(chr8:75197438-81685526)x1 copy number loss See cases [RCV000445718] Chr8:75197438..81685526 [GRCh37]
Chr8:8q21.11-21.13		 pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771) copy number gain See cases [RCV000510234] Chr8:158049..146295771 [GRCh37]
Chr8:8p23.3-q24.3		 pathogenic
GRCh37/hg19 8q21.11-21.13(chr8:77751515-83516216)x1 copy number loss See cases [RCV000511429] Chr8:77751515..83516216 [GRCh37]
Chr8:8q21.11-21.13		 pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771)x3 copy number gain See cases [RCV000511095] Chr8:158049..146295771 [GRCh37]
Chr8:8p23.3-q24.3		 pathogenic
GRCh37/hg19 8q21.13(chr8:80883771-81650440)x3 copy number gain See cases [RCV000511010] Chr8:80883771..81650440 [GRCh37]
Chr8:8q21.13		 likely benign
GRCh37/hg19 8p23.1-q24.3(chr8:12490999-146295771)x3 copy number gain See cases [RCV000512169] Chr8:12490999..146295771 [GRCh37]
Chr8:8p23.1-q24.3		 pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:10213-146293414)x3 copy number gain not provided [RCV000747248] Chr8:10213..146293414 [GRCh37]
Chr8:8p23.3-q24.3		 pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:164984-146293414)x3 copy number gain not provided [RCV000747254] Chr8:164984..146293414 [GRCh37]
Chr8:8p23.3-q24.3		 pathogenic
NM_001033723.3(ZNF704):c.53T>A (p.Met18Lys) single nucleotide variant Inborn genetic diseases [RCV003244761] Chr8:80821542 [GRCh38]
Chr8:81733777 [GRCh37]
Chr8:8q21.13		 uncertain significance
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771)x3 copy number gain not provided [RCV000848478] Chr8:158048..146295771 [GRCh37]
Chr8:8p23.3-q24.3		 pathogenic
NM_001033723.3(ZNF704):c.650T>A (p.Ile217Asn) single nucleotide variant Inborn genetic diseases [RCV003251095] Chr8:80670512 [GRCh38]
Chr8:81582747 [GRCh37]
Chr8:8q21.13		 uncertain significance
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771) copy number gain Polydactyly [RCV002280629] Chr8:158048..146295771 [GRCh37]
Chr8:8p23.3-q24.3		 pathogenic
GRCh37/hg19 8q13.2-24.3(chr8:70382990-146295771) copy number gain not specified [RCV002053772] Chr8:70382990..146295771 [GRCh37]
Chr8:8q13.2-24.3		 pathogenic
GRCh37/hg19 8q21.11-21.3(chr8:77906471-88917707) copy number loss not specified [RCV002053776] Chr8:77906471..88917707 [GRCh37]
Chr8:8q21.11-21.3		 pathogenic
GRCh37/hg19 8q21.11-21.13(chr8:75197438-81685526) copy number loss not specified [RCV002053774] Chr8:75197438..81685526 [GRCh37]
Chr8:8q21.11-21.13		 pathogenic
NM_001033723.3(ZNF704):c.82A>G (p.Met28Val) single nucleotide variant Inborn genetic diseases [RCV003254316] Chr8:80821513 [GRCh38]
Chr8:81733748 [GRCh37]
Chr8:8q21.13		 uncertain significance
GRCh37/hg19 8q21.11-21.3(chr8:75904944-87097083)x1 copy number loss Chromosome 8q21.11 deletion syndrome [RCV002279750] Chr8:75904944..87097083 [GRCh37]
Chr8:8q21.11-21.3		 pathogenic
GRCh37/hg19 8q21.12-21.13(chr8:79876744-83112711)x3 copy number gain not provided [RCV002472757] Chr8:79876744..83112711 [GRCh37]
Chr8:8q21.12-21.13		 uncertain significance
GRCh37/hg19 8q21.12-24.11(chr8:79409349-119040631)x3 copy number gain not provided [RCV002474526] Chr8:79409349..119040631 [GRCh37]
Chr8:8q21.12-24.11		 pathogenic
NM_001033723.3(ZNF704):c.973A>G (p.Asn325Asp) single nucleotide variant Inborn genetic diseases [RCV002704215] Chr8:80659644 [GRCh38]
Chr8:81571879 [GRCh37]
Chr8:8q21.13		 uncertain significance
NM_001033723.3(ZNF704):c.14T>G (p.Phe5Cys) single nucleotide variant Inborn genetic diseases [RCV002640815] Chr8:80821581 [GRCh38]
Chr8:81733816 [GRCh37]
Chr8:8q21.13		 uncertain significance
NM_001033723.3(ZNF704):c.89A>G (p.Glu30Gly) single nucleotide variant Inborn genetic diseases [RCV002719193] Chr8:80821506 [GRCh38]
Chr8:81733741 [GRCh37]
Chr8:8q21.13		 uncertain significance
NM_001033723.3(ZNF704):c.316C>T (p.Arg106Trp) single nucleotide variant Inborn genetic diseases [RCV002652327] Chr8:80693013 [GRCh38]
Chr8:81605248 [GRCh37]
Chr8:8q21.13		 uncertain significance
NM_001033723.3(ZNF704):c.1132C>T (p.Pro378Ser) single nucleotide variant Inborn genetic diseases [RCV003257980] Chr8:80641473 [GRCh38]
Chr8:81553708 [GRCh37]
Chr8:8q21.13		 uncertain significance
NM_001033723.3(ZNF704):c.278G>C (p.Ser93Thr) single nucleotide variant Inborn genetic diseases [RCV003299753] Chr8:80693051 [GRCh38]
Chr8:81605286 [GRCh37]
Chr8:8q21.13		 uncertain significance
NM_001033723.3(ZNF704):c.382A>G (p.Ser128Gly) single nucleotide variant Inborn genetic diseases [RCV003191413] Chr8:80687402 [GRCh38]
Chr8:81599637 [GRCh37]
Chr8:8q21.13		 uncertain significance
NM_001033723.3(ZNF704):c.827C>G (p.Thr276Arg) single nucleotide variant Inborn genetic diseases [RCV003366248] Chr8:80664915 [GRCh38]
Chr8:81577150 [GRCh37]
Chr8:8q21.13		 uncertain significance
GRCh37/hg19 8q21.12-22.3(chr8:79046933-102008860)x3 copy number gain not provided [RCV003484742] Chr8:79046933..102008860 [GRCh37]
Chr8:8q21.12-22.3		 pathogenic
GRCh37/hg19 8p21.2-q21.3(chr8:27024288-89410121)x3 copy number gain not specified [RCV003986754] Chr8:27024288..89410121 [GRCh37]
Chr8:8p21.2-q21.3		 pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771)x3 copy number gain not specified [RCV003986742] Chr8:158048..146295771 [GRCh37]
Chr8:8p23.3-q24.3		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:6129
Count of miRNA genes:1511
Interacting mature miRNAs:2091
Transcripts:ENST00000327835, ENST00000517379, ENST00000517986, ENST00000519936, ENST00000520336, ENST00000522040
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH68638  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37881,639,759 - 81,639,895UniSTSGRCh37
Build 36881,802,314 - 81,802,450RGDNCBI36
Celera877,644,726 - 77,644,862RGD
Cytogenetic Map8q21.13UniSTS
HuRef877,129,410 - 77,129,546UniSTS
GeneMap99-GB4 RH Map8403.91UniSTS
NCBI RH Map8869.7UniSTS
SHGC-85851  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37881,741,913 - 81,742,185UniSTSGRCh37
Build 36881,904,468 - 81,904,740RGDNCBI36
Celera877,746,880 - 77,747,152RGD
Cytogenetic Map8q21.13UniSTS
HuRef877,231,504 - 77,231,776UniSTS
TNG Radiation Hybrid Map840037.0UniSTS
RH122469  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37881,719,160 - 81,719,444UniSTSGRCh37
Build 36881,881,715 - 81,881,999RGDNCBI36
Celera877,724,127 - 77,724,411RGD
Cytogenetic Map8q21.13UniSTS
HuRef877,208,747 - 77,209,031UniSTS
TNG Radiation Hybrid Map840034.0UniSTS
RH122498  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37881,719,191 - 81,719,486UniSTSGRCh37
Build 36881,881,746 - 81,882,041RGDNCBI36
Celera877,724,158 - 77,724,453RGD
Cytogenetic Map8q21.13UniSTS
HuRef877,208,778 - 77,209,073UniSTS
TNG Radiation Hybrid Map840034.0UniSTS
D8S1408E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37881,540,816 - 81,540,913UniSTSGRCh37
Build 36881,703,371 - 81,703,468RGDNCBI36
Celera877,545,783 - 77,545,880RGD
Cytogenetic Map8q21.13UniSTS
HuRef877,030,696 - 77,030,793UniSTS
SHGC-142021  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37881,778,535 - 81,778,812UniSTSGRCh37
Build 36881,941,090 - 81,941,367RGDNCBI36
Celera877,783,500 - 77,783,777RGD
Cytogenetic Map8q21.13UniSTS
HuRef877,268,124 - 77,268,401UniSTS
TNG Radiation Hybrid Map840082.0UniSTS
SHGC-154425  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37881,627,524 - 81,627,832UniSTSGRCh37
Build 36881,790,079 - 81,790,387RGDNCBI36
Celera877,632,491 - 77,632,799RGD
Cytogenetic Map8q21.13UniSTS
HuRef877,117,175 - 77,117,483UniSTS
TNG Radiation Hybrid Map839996.0UniSTS
STS-N55108  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37881,729,361 - 81,729,560UniSTSGRCh37
Build 36881,891,916 - 81,892,115RGDNCBI36
Celera877,734,328 - 77,734,527RGD
Cytogenetic Map8q21.13UniSTS
HuRef877,218,951 - 77,219,150UniSTS
GeneMap99-GB4 RH Map8404.73UniSTS
NCBI RH Map8871.8UniSTS
RH18330  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37881,541,676 - 81,541,793UniSTSGRCh37
Build 36881,704,231 - 81,704,348RGDNCBI36
Celera877,546,643 - 77,546,760RGD
Cytogenetic Map8q21.13UniSTS
HuRef877,031,556 - 77,031,673UniSTS
GeneMap99-GB4 RH Map8404.21UniSTS
NCBI RH Map8870.0UniSTS
D8S1395E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37881,540,784 - 81,540,919UniSTSGRCh37
Build 36881,703,339 - 81,703,474RGDNCBI36
Celera877,545,751 - 77,545,886RGD
Cytogenetic Map8q21.13UniSTS
HuRef877,030,664 - 77,030,799UniSTS
GeneMap99-GB4 RH Map8401.67UniSTS
NCBI RH Map8870.5UniSTS
SHGC-53169  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37881,785,206 - 81,785,387UniSTSGRCh37
Build 36881,947,761 - 81,947,942RGDNCBI36
Celera877,790,171 - 77,790,352RGD
Cytogenetic Map8q21.13UniSTS
HuRef877,274,795 - 77,274,976UniSTS
TNG Radiation Hybrid Map840090.0UniSTS
D8S1095  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37881,718,507 - 81,718,636UniSTSGRCh37
Build 36881,881,062 - 81,881,191RGDNCBI36
Celera877,723,474 - 77,723,603RGD
Cytogenetic Map8q21.13UniSTS
HuRef877,208,094 - 77,208,223UniSTS
TNG Radiation Hybrid Map840025.0UniSTS
Stanford-G3 RH Map83264.0UniSTS
Whitehead-YAC Contig Map8 UniSTS
NCBI RH Map8889.3UniSTS
RH45668  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37881,684,618 - 81,684,751UniSTSGRCh37
Build 36881,847,173 - 81,847,306RGDNCBI36
Celera877,689,586 - 77,689,719RGD
Cytogenetic Map8q21.13UniSTS
Cytogenetic Map1p34.2UniSTS
HuRef139,514,169 - 39,514,320UniSTS
HuRef877,174,286 - 77,174,419UniSTS
GeneMap99-GB4 RH Map8401.49UniSTS
NCBI RH Map8873.3UniSTS
RH12788  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37881,545,387 - 81,545,523UniSTSGRCh37
Build 36881,707,942 - 81,708,078RGDNCBI36
Celera877,550,354 - 77,550,490RGD
Cytogenetic Map8q21.13UniSTS
HuRef877,035,267 - 77,035,403UniSTS
GeneMap99-GB4 RH Map8403.99UniSTS
NCBI RH Map8867.8UniSTS
STS-N33187  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37881,547,829 - 81,547,987UniSTSGRCh37
Build 36881,710,384 - 81,710,542RGDNCBI36
Celera877,552,796 - 77,552,954RGD
Cytogenetic Map8q21.13UniSTS
HuRef877,037,709 - 77,037,867UniSTS
GeneMap99-GB4 RH Map8403.91UniSTS
NCBI RH Map8869.2UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 572 1304 301 95 35 23 1605 280 1025 130 784 599 75 536 1134 1
Low 1837 919 1402 515 579 427 2744 1903 2656 267 649 966 95 1 668 1653 4 2
Below cutoff 19 741 18 14 813 15 4 9 32 12 19 31 3 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001367783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017013725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054360961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008487869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_928797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC012533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC022598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC024367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC136844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC136845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM683148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX112159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000327835   ⟹   ENSP00000331462
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl880,628,451 - 80,874,781 (-)Ensembl
RefSeq Acc Id: ENST00000517379
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl880,638,534 - 80,640,695 (-)Ensembl
RefSeq Acc Id: ENST00000517986
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl880,658,668 - 80,659,664 (-)Ensembl
RefSeq Acc Id: ENST00000519936   ⟹   ENSP00000427715
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl880,628,451 - 80,874,439 (-)Ensembl
RefSeq Acc Id: ENST00000520336
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl880,665,067 - 80,814,259 (-)Ensembl
RefSeq Acc Id: ENST00000522040
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl880,664,842 - 80,673,339 (-)Ensembl
RefSeq Acc Id: NM_001033723   ⟹   NP_001028895
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38880,628,451 - 80,874,781 (-)NCBI
GRCh37881,540,686 - 81,787,016 (-)RGD
Build 36881,713,324 - 81,949,571 (-)NCBI Archive
Celera877,545,653 - 77,791,981 (-)RGD
HuRef877,030,566 - 77,276,549 (-)ENTREZGENE
CHM1_1881,592,911 - 81,839,267 (-)NCBI
T2T-CHM13v2.0881,060,029 - 81,306,362 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001367783   ⟹   NP_001354712
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38880,628,451 - 80,874,468 (-)NCBI
T2T-CHM13v2.0881,060,029 - 81,306,049 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017013725   ⟹   XP_016869214
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38880,628,451 - 80,884,419 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054360961   ⟹   XP_054216936
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0881,060,029 - 81,315,991 (-)NCBI
RefSeq Acc Id: XR_008487869
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0881,060,029 - 81,306,049 (-)NCBI
RefSeq Acc Id: XR_928797
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38880,628,451 - 80,874,468 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001028895   ⟸   NM_001033723
- Peptide Label: isoform 1
- UniProtKB: B2RNE6 (UniProtKB/Swiss-Prot),   B9EGW6 (UniProtKB/Swiss-Prot),   Q6ZNC4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016869214   ⟸   XM_017013725
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001354712   ⟸   NM_001367783
- Peptide Label: isoform 2
- UniProtKB: E5RGL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSP00000427715   ⟸   ENST00000519936
RefSeq Acc Id: ENSP00000331462   ⟸   ENST00000327835
RefSeq Acc Id: XP_054216936   ⟸   XM_054360961
- Peptide Label: isoform X1
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6ZNC4-F1-model_v2 AlphaFold Q6ZNC4 1-412 view protein structure

Promoters
RGD ID:7213627
Promoter ID:EPDNEW_H12559
Type:initiation region
Name:ZNF704_2
Description:zinc finger protein 704
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12560  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38880,874,439 - 80,874,499EPDNEW
RGD ID:7213629
Promoter ID:EPDNEW_H12560
Type:multiple initiation site
Name:ZNF704_1
Description:zinc finger protein 704
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12559  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38880,874,781 - 80,874,841EPDNEW
RGD ID:6807189
Promoter ID:HG_KWN:61588
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell
Transcripts:NM_001033723
Position:
Human AssemblyChrPosition (strand)Source
Build 36881,949,111 - 81,949,611 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:32291 AgrOrtholog
COSMIC ZNF704 COSMIC
Ensembl Genes ENSG00000164684 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000327835 ENTREZGENE
  ENST00000327835.7 UniProtKB/Swiss-Prot
  ENST00000519936 ENTREZGENE
  ENST00000519936.2 UniProtKB/TrEMBL
GTEx ENSG00000164684 GTEx
HGNC ID HGNC:32291 ENTREZGENE
Human Proteome Map ZNF704 Human Proteome Map
InterPro Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:619279 UniProtKB/Swiss-Prot
NCBI Gene 619279 ENTREZGENE
PANTHER PAPILLOMAVIRUS REGULATORY FACTOR PRF-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 704 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA142670501 PharmGKB
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART c-clamp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RNE6 ENTREZGENE
  B9EGW6 ENTREZGENE
  E5RGL7 ENTREZGENE, UniProtKB/TrEMBL
  Q6ZNC4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B2RNE6 UniProtKB/Swiss-Prot
  B9EGW6 UniProtKB/Swiss-Prot