UBE2Q2 (ubiquitin conjugating enzyme E2 Q2) - Rat Genome Database

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Gene: UBE2Q2 (ubiquitin conjugating enzyme E2 Q2) Homo sapiens
Analyze
Symbol: UBE2Q2
Name: ubiquitin conjugating enzyme E2 Q2
RGD ID: 1605308
HGNC Page HGNC:19248
Description: Enables ubiquitin-protein transferase activity. Involved in protein K48-linked ubiquitination. Predicted to be located in cytosol. Predicted to be active in nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DKFZp762C143; E2 ubiquitin-conjugating enzyme Q2; ubiquitin carrier protein Q2; ubiquitin conjugating enzyme E2Q family member 2; ubiquitin-conjugating enzyme E2 Q2; ubiquitin-conjugating enzyme E2Q family member 2; ubiquitin-protein ligase Q2
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: LOC400464   UBE2Q2P1   UBE2Q2P11   UBE2Q2P12   UBE2Q2P13   UBE2Q2P16   UBE2Q2P2   UBE2Q2P4Y   UBE2Q2P5Y   UBE2Q2P6   UBE2Q2P7   UBE2Q2P8   UBE2Q2P9  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381575,843,447 - 75,901,078 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1575,843,307 - 75,901,078 (+)EnsemblGRCh38hg38GRCh38
GRCh371576,135,788 - 76,193,419 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361573,922,855 - 73,980,440 (+)NCBINCBI36Build 36hg18NCBI36
Celera1553,061,306 - 53,119,318 (+)NCBICelera
Cytogenetic Map15q24.2NCBI
HuRef1552,891,934 - 52,949,669 (+)NCBIHuRef
CHM1_11576,255,115 - 76,312,875 (+)NCBICHM1_1
T2T-CHM13v2.01573,714,215 - 73,771,828 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (TAS)
nucleus  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:16300736   PMID:17207965   PMID:17471241   PMID:19322201   PMID:19549727   PMID:19690564   PMID:19723876   PMID:20061386   PMID:20193842   PMID:20383146  
PMID:21113135   PMID:21873635   PMID:22642244   PMID:22898364   PMID:23263486   PMID:25527291   PMID:26489670   PMID:26745068   PMID:27425610   PMID:30017913   PMID:30097011   PMID:32393512  
PMID:32814053   PMID:33607208   PMID:33961781   PMID:34857952   PMID:35199132  


Genomics

Comparative Map Data
UBE2Q2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381575,843,447 - 75,901,078 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1575,843,307 - 75,901,078 (+)EnsemblGRCh38hg38GRCh38
GRCh371576,135,788 - 76,193,419 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361573,922,855 - 73,980,440 (+)NCBINCBI36Build 36hg18NCBI36
Celera1553,061,306 - 53,119,318 (+)NCBICelera
Cytogenetic Map15q24.2NCBI
HuRef1552,891,934 - 52,949,669 (+)NCBIHuRef
CHM1_11576,255,115 - 76,312,875 (+)NCBICHM1_1
T2T-CHM13v2.01573,714,215 - 73,771,828 (+)NCBIT2T-CHM13v2.0
Ube2q2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39955,056,602 - 55,114,813 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl955,056,138 - 55,114,813 (+)EnsemblGRCm39 Ensembl
GRCm38955,149,369 - 55,207,529 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl955,148,854 - 55,207,529 (+)EnsemblGRCm38mm10GRCm38
MGSCv37954,997,176 - 55,055,336 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36954,947,515 - 55,005,665 (+)NCBIMGSCv36mm8
Celera952,388,923 - 52,447,126 (+)NCBICelera
Cytogenetic Map9BNCBI
cM Map929.84NCBI
Ube2q2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8864,414,502 - 64,474,425 (+)NCBIGRCr8
mRatBN7.2855,518,402 - 55,578,342 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl855,519,147 - 55,577,212 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx861,061,036 - 61,120,343 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0859,340,035 - 59,399,342 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0857,204,275 - 57,263,583 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0859,709,972 - 59,754,102 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl859,711,549 - 59,766,889 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0858,292,660 - 58,349,722 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4858,688,257 - 58,749,088 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1858,649,776 - 58,767,495 (+)NCBI
Celera855,002,483 - 55,063,447 (+)NCBICelera
Cytogenetic Map8q24NCBI
Ube2q2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554501,102,404 - 1,152,272 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554501,102,404 - 1,151,511 (+)NCBIChiLan1.0ChiLan1.0
UBE2Q2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21665,039,568 - 65,099,304 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11569,203,817 - 69,263,442 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01554,754,642 - 54,814,264 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11574,347,970 - 74,407,411 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1574,348,034 - 74,407,411 (+)Ensemblpanpan1.1panPan2
UBE2Q2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13040,130,456 - 40,189,244 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3040,101,540 - 40,189,159 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3039,987,498 - 40,046,156 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03040,332,605 - 40,391,338 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3040,303,037 - 40,391,328 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13040,280,628 - 40,339,398 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03040,328,240 - 40,386,850 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03040,565,814 - 40,624,486 (-)NCBIUU_Cfam_GSD_1.0
Ube2q2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640118,409,391 - 118,466,976 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647136,257,454 - 36,314,634 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647136,257,454 - 36,314,634 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBE2Q2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl756,084,072 - 56,144,916 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1756,084,017 - 56,144,915 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
UBE2Q2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1267,390,115 - 7,448,304 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl267,389,997 - 7,448,137 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048134,266,369 - 134,325,098 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ube2q2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248942,179,617 - 2,233,855 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248942,179,617 - 2,233,800 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UBE2Q2
24 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 15q24.2-26.3(chr15:75307767-101723215)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052346]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052346]|See cases [RCV000052346] Chr15:75307767..101723215 [GRCh38]
Chr15:75600108..102263418 [GRCh37]
Chr15:73387161..100080941 [NCBI36]
Chr15:15q24.2-26.3
pathogenic
GRCh38/hg38 15q23-24.2(chr15:70788624-76057736)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053219]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053219]|See cases [RCV000053219] Chr15:70788624..76057736 [GRCh38]
Chr15:71080963..76350077 [GRCh37]
Chr15:68868017..74137132 [NCBI36]
Chr15:15q23-24.2
pathogenic
GRCh38/hg38 15q24.2(chr15:75596961-76049787)x1 copy number loss See cases [RCV000053223] Chr15:75596961..76049787 [GRCh38]
Chr15:75889302..76342128 [GRCh37]
Chr15:73676357..74129183 [NCBI36]
Chr15:15q24.2
pathogenic
GRCh38/hg38 15q23-25.1(chr15:70025300-78705993)x1 copy number loss See cases [RCV000141666] Chr15:70025300..78705993 [GRCh38]
Chr15:70317639..78998335 [GRCh37]
Chr15:68104693..76785390 [NCBI36]
Chr15:15q23-25.1
pathogenic
GRCh38/hg38 15q23-26.3(chr15:72154949-101920998)x3 copy number gain See cases [RCV000143019] Chr15:72154949..101920998 [GRCh38]
Chr15:72447290..102461201 [GRCh37]
Chr15:70234344..100278724 [NCBI36]
Chr15:15q23-26.3
pathogenic
GRCh38/hg38 15q22.2-26.3(chr15:59828460-101920998)x3 copy number gain See cases [RCV000142915] Chr15:59828460..101920998 [GRCh38]
Chr15:60120659..102461201 [GRCh37]
Chr15:57907951..100278724 [NCBI36]
Chr15:15q22.2-26.3
pathogenic
GRCh37/hg19 15q24.2-26.3(chr15:76061144-102429112)x3 copy number gain See cases [RCV000511332] Chr15:76061144..102429112 [GRCh37]
Chr15:15q24.2-26.3
pathogenic
GRCh37/hg19 15q24.1-24.3(chr15:74368270-78122737)x3 copy number gain See cases [RCV000240526] Chr15:74368270..78122737 [GRCh37]
Chr15:15q24.1-24.3
uncertain significance
GRCh37/hg19 15q22.31-26.3(chr15:64637227-102509910)x3 copy number gain See cases [RCV000240602] Chr15:64637227..102509910 [GRCh37]
Chr15:15q22.31-26.3
pathogenic
GRCh37/hg19 15q22.1-26.3(chr15:59297293-102480888)x3 copy number gain not provided [RCV000415836] Chr15:59297293..102480888 [GRCh37]
Chr15:15q22.1-26.3
likely pathogenic
GRCh37/hg19 15q15.1-26.3(chr15:41745084-102354798)x4 copy number gain See cases [RCV000447123] Chr15:41745084..102354798 [GRCh37]
Chr15:15q15.1-26.3
pathogenic
GRCh37/hg19 15q24.2-24.3(chr15:76061143-78265674)x3 copy number gain See cases [RCV000446527] Chr15:76061143..78265674 [GRCh37]
Chr15:15q24.2-24.3
uncertain significance
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112)x3 copy number gain See cases [RCV000510717] Chr15:22770422..102429112 [GRCh37]
Chr15:15q11.2-26.3
pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:20733395-102511616)x4 copy number gain See cases [RCV000447765] Chr15:20733395..102511616 [GRCh37]
Chr15:15q11.2-26.3
pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112) copy number gain See cases [RCV000512019] Chr15:22770422..102429112 [GRCh37]
Chr15:15q11.2-26.3
pathogenic
NM_173469.4(UBE2Q2):c.707T>C (p.Leu236Ser) single nucleotide variant Inborn genetic diseases [RCV003273223] Chr15:75877994 [GRCh38]
Chr15:76170335 [GRCh37]
Chr15:15q24.2
uncertain significance
Single allele duplication not provided [RCV000677926] Chr15:31115047..102354857 [GRCh37]
Chr15:15q13.2-26.3
pathogenic
GRCh37/hg19 15q23-26.3(chr15:71329220-102270758)x3 copy number gain not provided [RCV000683703] Chr15:71329220..102270758 [GRCh37]
Chr15:15q23-26.3
pathogenic
Single allele duplication Schizophrenia [RCV000754167] Chr15:74071509..77878298 [GRCh38]
Chr15:15q24.1-24.3
likely pathogenic
GRCh37/hg19 15q11.1-26.3(chr15:20071673-102461162)x3 copy number gain not provided [RCV000751156] Chr15:20071673..102461162 [GRCh37]
Chr15:15q11.1-26.3
pathogenic
GRCh37/hg19 15q11.1-26.3(chr15:20016811-102493540)x3 copy number gain not provided [RCV000751155] Chr15:20016811..102493540 [GRCh37]
Chr15:15q11.1-26.3
pathogenic
GRCh37/hg19 15q24.2(chr15:76063129-76415430)x3 copy number gain not provided [RCV000848953] Chr15:76063129..76415430 [GRCh37]
Chr15:15q24.2
uncertain significance
GRCh37/hg19 15q24.2-24.3(chr15:75920400-76632051)x3 copy number gain not provided [RCV001259710] Chr15:75920400..76632051 [GRCh37]
Chr15:15q24.2-24.3
uncertain significance
NC_000015.9:g.(?_32964879)_(91358519_?)dup duplication Bloom syndrome [RCV001343104]|Familial colorectal cancer [RCV001325176] Chr15:32964879..91358519 [GRCh37]
Chr15:15q13.3-26.1
uncertain significance
NM_173469.4(UBE2Q2):c.148C>T (p.Pro50Ser) single nucleotide variant Inborn genetic diseases [RCV003283640] Chr15:75843814 [GRCh38]
Chr15:76136155 [GRCh37]
Chr15:15q24.2
uncertain significance
NM_173469.4(UBE2Q2):c.218A>G (p.Asp73Gly) single nucleotide variant Inborn genetic diseases [RCV003263330] Chr15:75854423 [GRCh38]
Chr15:76146764 [GRCh37]
Chr15:15q24.2
uncertain significance
GRCh37/hg19 15q24.1-24.3(chr15:74353736-77884397)x1 copy number loss not provided [RCV002474580] Chr15:74353736..77884397 [GRCh37]
Chr15:15q24.1-24.3
pathogenic
NM_173469.4(UBE2Q2):c.111G>C (p.Gln37His) single nucleotide variant Inborn genetic diseases [RCV002774123] Chr15:75843777 [GRCh38]
Chr15:76136118 [GRCh37]
Chr15:15q24.2
uncertain significance
NM_173469.4(UBE2Q2):c.640A>G (p.Arg214Gly) single nucleotide variant Inborn genetic diseases [RCV002864455] Chr15:75876238 [GRCh38]
Chr15:76168579 [GRCh37]
Chr15:15q24.2
uncertain significance
NM_173469.4(UBE2Q2):c.97G>C (p.Glu33Gln) single nucleotide variant Inborn genetic diseases [RCV002882701] Chr15:75843763 [GRCh38]
Chr15:76136104 [GRCh37]
Chr15:15q24.2
uncertain significance
NM_173469.4(UBE2Q2):c.520G>A (p.Gly174Arg) single nucleotide variant Inborn genetic diseases [RCV002782890] Chr15:75873500 [GRCh38]
Chr15:76165841 [GRCh37]
Chr15:15q24.2
uncertain significance
NM_173469.4(UBE2Q2):c.253C>T (p.Arg85Cys) single nucleotide variant Inborn genetic diseases [RCV002782268] Chr15:75854458 [GRCh38]
Chr15:76146799 [GRCh37]
Chr15:15q24.2
uncertain significance
NM_173469.4(UBE2Q2):c.827A>G (p.Asp276Gly) single nucleotide variant Inborn genetic diseases [RCV002887655] Chr15:75883367 [GRCh38]
Chr15:76175708 [GRCh37]
Chr15:15q24.2
uncertain significance
NM_173469.4(UBE2Q2):c.955A>G (p.Ile319Val) single nucleotide variant Inborn genetic diseases [RCV002951578] Chr15:75890940 [GRCh38]
Chr15:76183281 [GRCh37]
Chr15:15q24.2
uncertain significance
NM_173469.4(UBE2Q2):c.254G>A (p.Arg85His) single nucleotide variant Inborn genetic diseases [RCV002693524] Chr15:75854459 [GRCh38]
Chr15:76146800 [GRCh37]
Chr15:15q24.2
uncertain significance
NM_173469.4(UBE2Q2):c.310T>C (p.Cys104Arg) single nucleotide variant Inborn genetic diseases [RCV002892549] Chr15:75859905 [GRCh38]
Chr15:76152246 [GRCh37]
Chr15:15q24.2
uncertain significance
NM_173469.4(UBE2Q2):c.762T>A (p.Ser254Arg) single nucleotide variant Inborn genetic diseases [RCV002665045] Chr15:75879125 [GRCh38]
Chr15:76171466 [GRCh37]
Chr15:15q24.2
uncertain significance
NM_173469.4(UBE2Q2):c.370C>T (p.Pro124Ser) single nucleotide variant Inborn genetic diseases [RCV002960704] Chr15:75859965 [GRCh38]
Chr15:76152306 [GRCh37]
Chr15:15q24.2
uncertain significance
NM_173469.4(UBE2Q2):c.327A>T (p.Leu109Phe) single nucleotide variant Inborn genetic diseases [RCV003192900] Chr15:75859922 [GRCh38]
Chr15:76152263 [GRCh37]
Chr15:15q24.2
uncertain significance
NM_173469.4(UBE2Q2):c.439A>G (p.Met147Val) single nucleotide variant Inborn genetic diseases [RCV003208184] Chr15:75869002 [GRCh38]
Chr15:76161343 [GRCh37]
Chr15:15q24.2
uncertain significance
NM_173469.4(UBE2Q2):c.181G>A (p.Glu61Lys) single nucleotide variant Inborn genetic diseases [RCV003189790] Chr15:75854386 [GRCh38]
Chr15:76146727 [GRCh37]
Chr15:15q24.2
uncertain significance
GRCh37/hg19 15q22.33-26.1(chr15:67358491-91644328)x3 copy number gain not provided [RCV003222839] Chr15:67358491..91644328 [GRCh37]
Chr15:15q22.33-26.1
pathogenic
NM_173469.4(UBE2Q2):c.743C>T (p.Pro248Leu) single nucleotide variant Inborn genetic diseases [RCV003184388] Chr15:75879106 [GRCh38]
Chr15:76171447 [GRCh37]
Chr15:15q24.2
uncertain significance
NM_173469.4(UBE2Q2):c.910T>G (p.Cys304Gly) single nucleotide variant Inborn genetic diseases [RCV003206508] Chr15:75890460 [GRCh38]
Chr15:76182801 [GRCh37]
Chr15:15q24.2
uncertain significance
GRCh37/hg19 15q24.1-26.3(chr15:75165490-102520892)x3 copy number gain See cases [RCV003329502] Chr15:75165490..102520892 [GRCh37]
Chr15:15q24.1-26.3
pathogenic
NM_173469.4(UBE2Q2):c.884+2293G>A single nucleotide variant Congenital dyserythropoietic anemia [RCV003326048] Chr15:75885717 [GRCh38]
Chr15:76178058 [GRCh37]
Chr15:15q24.2
uncertain significance
NM_173469.4(UBE2Q2):c.385C>G (p.Gln129Glu) single nucleotide variant Inborn genetic diseases [RCV003359590] Chr15:75859980 [GRCh38]
Chr15:76152321 [GRCh37]
Chr15:15q24.2
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2888
Count of miRNA genes:559
Interacting mature miRNAs:607
Transcripts:ENST00000267938, ENST00000338677, ENST00000426727, ENST00000561723, ENST00000561851, ENST00000562635, ENST00000563966, ENST00000567921, ENST00000569423
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
G17835  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371576,155,621 - 76,155,772UniSTSGRCh37
Build 361573,942,676 - 73,942,827RGDNCBI36
Celera1553,081,305 - 53,081,456RGD
Cytogenetic Map15q24.2UniSTS
HuRef1552,911,931 - 52,912,082UniSTS
STS-N25939  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371576,192,289 - 76,192,485UniSTSGRCh37
Build 361573,979,344 - 73,979,540RGDNCBI36
Celera1553,118,216 - 53,118,412RGD
Cytogenetic Map15q24.2UniSTS
HuRef1552,948,567 - 52,948,763UniSTS
GeneMap99-GB4 RH Map15258.61UniSTS
RH103205  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371576,193,136 - 76,193,262UniSTSGRCh37
Build 361573,980,191 - 73,980,317RGDNCBI36
Celera1553,119,066 - 53,119,192RGD
Cytogenetic Map15q24.2UniSTS
HuRef1552,949,417 - 52,949,543UniSTS
GeneMap99-GB4 RH Map15254.56UniSTS
D11S3570  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,560,226 - 1,560,341UniSTSGRCh37
GRCh371576,189,821 - 76,190,455UniSTSGRCh37
Build 36111,516,802 - 1,516,917RGDNCBI36
Celera1553,115,747 - 53,116,381UniSTS
Cytogenetic Map15q24.2UniSTS
HuRef1552,946,100 - 52,946,734UniSTS
SHGC-106475  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371576,169,837 - 76,170,151UniSTSGRCh37
Build 361573,956,892 - 73,957,206RGDNCBI36
Celera1553,095,528 - 53,095,842RGD
Cytogenetic Map15q24.2UniSTS
HuRef1552,926,152 - 52,926,466UniSTS
TNG Radiation Hybrid Map1539323.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2283 1913 1367 280 1193 124 3957 1622 2899 369 1437 1597 169 1201 2444 4
Low 154 1067 359 344 749 341 398 574 827 50 20 15 4 1 3 344 1 2
Below cutoff 1 9 9 7 2 1 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001145335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001284382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_173469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005254787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005254788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006720770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011522228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017022726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017022727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017022728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054379213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054379214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054379215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054379216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054379217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054379218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054379219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054379220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054379221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054379222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054379223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054379224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001751420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001751421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002957691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002957692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA476260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC019294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC027104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK294199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL117641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL832429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DR001046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HF583625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000267938   ⟹   ENSP00000267938
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1575,843,447 - 75,901,078 (+)Ensembl
RefSeq Acc Id: ENST00000426727   ⟹   ENSP00000400960
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1575,859,940 - 75,901,044 (+)Ensembl
RefSeq Acc Id: ENST00000561723   ⟹   ENSP00000458006
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1575,843,568 - 75,899,494 (+)Ensembl
RefSeq Acc Id: ENST00000561851   ⟹   ENSP00000456229
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1575,844,044 - 75,899,650 (+)Ensembl
RefSeq Acc Id: ENST00000562635
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1575,844,147 - 75,859,885 (+)Ensembl
RefSeq Acc Id: ENST00000563966
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1575,878,186 - 75,897,062 (+)Ensembl
RefSeq Acc Id: ENST00000567921   ⟹   ENSP00000454742
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1575,868,951 - 75,899,577 (+)Ensembl
RefSeq Acc Id: ENST00000569423   ⟹   ENSP00000456324
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1575,843,307 - 75,901,044 (+)Ensembl
RefSeq Acc Id: NM_001145335   ⟹   NP_001138807
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381575,844,044 - 75,901,047 (+)NCBI
GRCh371576,135,622 - 76,193,388 (+)RGD
GRCh371576,135,622 - 76,193,388 (+)NCBI
Celera1553,061,306 - 53,119,318 (+)RGD
HuRef1552,891,939 - 52,949,669 (+)NCBI
CHM1_11576,255,878 - 76,312,875 (+)NCBI
T2T-CHM13v2.01573,714,812 - 73,771,797 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001284382   ⟹   NP_001271311
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381575,843,447 - 75,901,078 (+)NCBI
HuRef1552,891,939 - 52,949,669 (+)NCBI
CHM1_11576,255,120 - 76,312,875 (+)NCBI
T2T-CHM13v2.01573,714,215 - 73,771,828 (+)NCBI
Sequence:
RefSeq Acc Id: NM_173469   ⟹   NP_775740
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381575,843,447 - 75,901,078 (+)NCBI
GRCh371576,135,622 - 76,193,388 (+)RGD
GRCh371576,135,622 - 76,193,388 (+)NCBI
Build 361573,922,855 - 73,980,440 (+)NCBI Archive
Celera1553,061,306 - 53,119,318 (+)RGD
HuRef1552,891,939 - 52,949,669 (+)NCBI
CHM1_11576,255,120 - 76,312,875 (+)NCBI
T2T-CHM13v2.01573,714,215 - 73,771,828 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005254787   ⟹   XP_005254844
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381575,843,447 - 75,901,078 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005254788   ⟹   XP_005254845
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381575,843,447 - 75,901,078 (+)NCBI
GRCh371576,135,622 - 76,193,388 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006720770   ⟹   XP_006720833
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381575,843,447 - 75,901,078 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011522228   ⟹   XP_011520530
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381575,843,447 - 75,874,908 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017022726   ⟹   XP_016878215
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381575,844,044 - 75,901,078 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017022727   ⟹   XP_016878216
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381575,843,447 - 75,901,078 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017022728   ⟹   XP_016878217
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381575,843,447 - 75,901,078 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047433346   ⟹   XP_047289302
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381575,844,044 - 75,901,078 (+)NCBI
RefSeq Acc Id: XM_047433347   ⟹   XP_047289303
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381575,844,044 - 75,901,078 (+)NCBI
RefSeq Acc Id: XM_047433349   ⟹   XP_047289305
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381575,843,447 - 75,879,143 (+)NCBI
RefSeq Acc Id: XM_047433350   ⟹   XP_047289306
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381575,843,447 - 75,901,078 (+)NCBI
RefSeq Acc Id: XM_047433351   ⟹   XP_047289307
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381575,843,447 - 75,879,143 (+)NCBI
RefSeq Acc Id: XM_054379213   ⟹   XP_054235188
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01573,714,812 - 73,771,828 (+)NCBI
RefSeq Acc Id: XM_054379214   ⟹   XP_054235189
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01573,714,215 - 73,771,828 (+)NCBI
RefSeq Acc Id: XM_054379215   ⟹   XP_054235190
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01573,714,215 - 73,771,828 (+)NCBI
RefSeq Acc Id: XM_054379216   ⟹   XP_054235191
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01573,714,812 - 73,771,828 (+)NCBI
RefSeq Acc Id: XM_054379217   ⟹   XP_054235192
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01573,714,215 - 73,771,828 (+)NCBI
RefSeq Acc Id: XM_054379218   ⟹   XP_054235193
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01573,714,812 - 73,771,828 (+)NCBI
RefSeq Acc Id: XM_054379219   ⟹   XP_054235194
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01573,714,215 - 73,771,828 (+)NCBI
RefSeq Acc Id: XM_054379220   ⟹   XP_054235195
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01573,714,215 - 73,771,828 (+)NCBI
RefSeq Acc Id: XM_054379221   ⟹   XP_054235196
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01573,714,215 - 73,749,914 (+)NCBI
RefSeq Acc Id: XM_054379222   ⟹   XP_054235197
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01573,714,215 - 73,771,828 (+)NCBI
RefSeq Acc Id: XM_054379223   ⟹   XP_054235198
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01573,714,215 - 73,745,674 (+)NCBI
RefSeq Acc Id: XM_054379224   ⟹   XP_054235199
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01573,714,215 - 73,749,914 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001138807 (Get FASTA)   NCBI Sequence Viewer  
  NP_001271311 (Get FASTA)   NCBI Sequence Viewer  
  NP_775740 (Get FASTA)   NCBI Sequence Viewer  
  XP_005254844 (Get FASTA)   NCBI Sequence Viewer  
  XP_005254845 (Get FASTA)   NCBI Sequence Viewer  
  XP_006720833 (Get FASTA)   NCBI Sequence Viewer  
  XP_011520530 (Get FASTA)   NCBI Sequence Viewer  
  XP_016878215 (Get FASTA)   NCBI Sequence Viewer  
  XP_016878216 (Get FASTA)   NCBI Sequence Viewer  
  XP_016878217 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289302 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289303 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289305 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289306 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289307 (Get FASTA)   NCBI Sequence Viewer  
  XP_054235188 (Get FASTA)   NCBI Sequence Viewer  
  XP_054235189 (Get FASTA)   NCBI Sequence Viewer  
  XP_054235190 (Get FASTA)   NCBI Sequence Viewer  
  XP_054235191 (Get FASTA)   NCBI Sequence Viewer  
  XP_054235192 (Get FASTA)   NCBI Sequence Viewer  
  XP_054235193 (Get FASTA)   NCBI Sequence Viewer  
  XP_054235194 (Get FASTA)   NCBI Sequence Viewer  
  XP_054235195 (Get FASTA)   NCBI Sequence Viewer  
  XP_054235196 (Get FASTA)   NCBI Sequence Viewer  
  XP_054235197 (Get FASTA)   NCBI Sequence Viewer  
  XP_054235198 (Get FASTA)   NCBI Sequence Viewer  
  XP_054235199 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH06827 (Get FASTA)   NCBI Sequence Viewer  
  AAH17708 (Get FASTA)   NCBI Sequence Viewer  
  AAH34342 (Get FASTA)   NCBI Sequence Viewer  
  BAG57513 (Get FASTA)   NCBI Sequence Viewer  
  BAH12288 (Get FASTA)   NCBI Sequence Viewer  
  CAH10654 (Get FASTA)   NCBI Sequence Viewer  
  CCQ43122 (Get FASTA)   NCBI Sequence Viewer  
  EAW99233 (Get FASTA)   NCBI Sequence Viewer  
  EAW99234 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000267938
  ENSP00000267938.4
  ENSP00000400960.2
  ENSP00000454742.1
  ENSP00000456229
  ENSP00000456229.1
  ENSP00000456324
  ENSP00000456324.1
  ENSP00000458006.1
GenBank Protein Q8WVN8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_775740   ⟸   NM_173469
- Peptide Label: isoform 1
- UniProtKB: Q8N4G6 (UniProtKB/Swiss-Prot),   H3BRG2 (UniProtKB/Swiss-Prot),   B7Z3Q2 (UniProtKB/Swiss-Prot),   Q96J08 (UniProtKB/Swiss-Prot),   Q8WVN8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001138807   ⟸   NM_001145335
- Peptide Label: isoform 2
- UniProtKB: Q8WVN8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005254844   ⟸   XM_005254787
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005254845   ⟸   XM_005254788
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001271311   ⟸   NM_001284382
- Peptide Label: isoform 3
- UniProtKB: Q8WVN8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006720833   ⟸   XM_006720770
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_011520530   ⟸   XM_011522228
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_016878216   ⟸   XM_017022727
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_016878217   ⟸   XM_017022728
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_016878215   ⟸   XM_017022726
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSP00000456324   ⟸   ENST00000569423
RefSeq Acc Id: ENSP00000267938   ⟸   ENST00000267938
RefSeq Acc Id: ENSP00000400960   ⟸   ENST00000426727
RefSeq Acc Id: ENSP00000456229   ⟸   ENST00000561851
RefSeq Acc Id: ENSP00000458006   ⟸   ENST00000561723
RefSeq Acc Id: ENSP00000454742   ⟸   ENST00000567921
RefSeq Acc Id: XP_047289306   ⟸   XM_047433350
- Peptide Label: isoform X10
RefSeq Acc Id: XP_047289305   ⟸   XM_047433349
- Peptide Label: isoform X9
RefSeq Acc Id: XP_047289307   ⟸   XM_047433351
- Peptide Label: isoform X12
RefSeq Acc Id: XP_047289303   ⟸   XM_047433347
- Peptide Label: isoform X6
RefSeq Acc Id: XP_047289302   ⟸   XM_047433346
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054235189   ⟸   XM_054379214
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054235190   ⟸   XM_054379215
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054235195   ⟸   XM_054379220
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054235192   ⟸   XM_054379217
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054235194   ⟸   XM_054379219
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054235197   ⟸   XM_054379222
- Peptide Label: isoform X10
RefSeq Acc Id: XP_054235196   ⟸   XM_054379221
- Peptide Label: isoform X9
RefSeq Acc Id: XP_054235199   ⟸   XM_054379224
- Peptide Label: isoform X12
RefSeq Acc Id: XP_054235198   ⟸   XM_054379223
- Peptide Label: isoform X11
RefSeq Acc Id: XP_054235191   ⟸   XM_054379216
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054235193   ⟸   XM_054379218
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054235188   ⟸   XM_054379213
- Peptide Label: isoform X1
Protein Domains
RWD   UBC core

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8WVN8-F1-model_v2 AlphaFold Q8WVN8 1-375 view protein structure

Promoters
RGD ID:6792661
Promoter ID:HG_KWN:21976
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000338677,   NM_001145335,   OTTHUMT00000286475,   UC002BBH.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361573,922,351 - 73,923,872 (+)MPROMDB
RGD ID:7230169
Promoter ID:EPDNEW_H20830
Type:initiation region
Name:UBE2Q2_2
Description:ubiquitin conjugating enzyme E2 Q2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H20809  EPDNEW_H20831  EPDNEW_H20832  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381575,843,082 - 75,843,142EPDNEW
RGD ID:7230171
Promoter ID:EPDNEW_H20831
Type:initiation region
Name:UBE2Q2_1
Description:ubiquitin conjugating enzyme E2 Q2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H20809  EPDNEW_H20830  EPDNEW_H20832  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381575,843,447 - 75,843,507EPDNEW
RGD ID:7230173
Promoter ID:EPDNEW_H20832
Type:initiation region
Name:UBE2Q2_3
Description:ubiquitin conjugating enzyme E2 Q2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H20809  EPDNEW_H20830  EPDNEW_H20831  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381575,859,979 - 75,860,039EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:19248 AgrOrtholog
COSMIC UBE2Q2 COSMIC
Ensembl Genes ENSG00000140367 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000267938 ENTREZGENE
  ENST00000267938.9 UniProtKB/Swiss-Prot
  ENST00000426727.6 UniProtKB/TrEMBL
  ENST00000561723.5 UniProtKB/TrEMBL
  ENST00000561851 ENTREZGENE
  ENST00000561851.5 UniProtKB/Swiss-Prot
  ENST00000567921.1 UniProtKB/TrEMBL
  ENST00000569423 ENTREZGENE
  ENST00000569423.5 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.110.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000140367 GTEx
HGNC ID HGNC:19248 ENTREZGENE
Human Proteome Map UBE2Q2 Human Proteome Map
InterPro RWD-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBQ-conjugat_E2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBQ-conjugating_enzyme/RWD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:92912 UniProtKB/Swiss-Prot
NCBI Gene 92912 ENTREZGENE
OMIM 612501 OMIM
Pfam RWD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UQ_con UniProtKB/Swiss-Prot
PharmGKB PA142670652 PharmGKB
PROSITE UBIQUITIN_CONJUGAT_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART UBCc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54495 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B7Z3Q2 ENTREZGENE
  E9PHD0_HUMAN UniProtKB/TrEMBL
  H3BN94_HUMAN UniProtKB/TrEMBL
  H3BRG2 ENTREZGENE
  H3BV95_HUMAN UniProtKB/TrEMBL
  L8EC84_HUMAN UniProtKB/TrEMBL
  Q8N4G6 ENTREZGENE
  Q8WVN8 ENTREZGENE
  Q96J08 ENTREZGENE
  UB2Q2_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary B7Z3Q2 UniProtKB/Swiss-Prot
  H3BRG2 UniProtKB/Swiss-Prot
  Q8N4G6 UniProtKB/Swiss-Prot
  Q96J08 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-21 UBE2Q2  ubiquitin conjugating enzyme E2 Q2    ubiquitin conjugating enzyme E2Q family member 2  Symbol and/or name change 5135510 APPROVED
2015-11-24 UBE2Q2  ubiquitin conjugating enzyme E2Q family member 2    ubiquitin-conjugating enzyme E2Q family member 2  Symbol and/or name change 5135510 APPROVED