C5orf24 (chromosome 5 open reading frame 24) - Rat Genome Database

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Gene: C5orf24 (chromosome 5 open reading frame 24) Homo sapiens
Analyze
Symbol: C5orf24
Name: chromosome 5 open reading frame 24
RGD ID: 1605291
HGNC Page HGNC:26746
Description: ASSOCIATED WITH familial adenomatous polyposis 1; Hereditary Neoplastic Syndromes; Neurodevelopmental Disorders; INTERACTS WITH acrolein; alpha-pinene; benzo[a]pyrene
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FLJ37562; hypothetical protein LOC134553; UPF0461 protein C5orf24
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385134,833,602 - 134,859,735 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5134,845,680 - 134,859,735 (+)EnsemblGRCh38hg38GRCh38
GRCh375134,181,370 - 134,195,425 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365134,209,269 - 134,222,687 (+)NCBINCBI36Build 36hg18NCBI36
Celera5130,309,065 - 130,323,730 (+)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5129,367,584 - 129,381,643 (+)NCBIHuRef
CHM1_15133,613,998 - 133,628,061 (+)NCBICHM1_1
T2T-CHM13v2.05135,360,554 - 135,386,687 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14702039   PMID:16344560   PMID:17207965   PMID:25416956   PMID:25609649   PMID:25665578   PMID:26496610   PMID:27609421   PMID:28514442   PMID:29467282   PMID:29844126  
PMID:32203420   PMID:32296183   PMID:33001583   PMID:33106477   PMID:33961781   PMID:34315543   PMID:35831314   PMID:35944360   PMID:36089195   PMID:36373674  


Genomics

Comparative Map Data
C5orf24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385134,833,602 - 134,859,735 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5134,845,680 - 134,859,735 (+)EnsemblGRCh38hg38GRCh38
GRCh375134,181,370 - 134,195,425 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365134,209,269 - 134,222,687 (+)NCBINCBI36Build 36hg18NCBI36
Celera5130,309,065 - 130,323,730 (+)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5129,367,584 - 129,381,643 (+)NCBIHuRef
CHM1_15133,613,998 - 133,628,061 (+)NCBICHM1_1
T2T-CHM13v2.05135,360,554 - 135,386,687 (+)NCBIT2T-CHM13v2.0
B230219D22Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391355,840,937 - 55,851,313 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1355,840,937 - 55,851,313 (+)EnsemblGRCm39 Ensembl
GRCm381355,693,124 - 55,703,500 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1355,693,124 - 55,703,500 (+)EnsemblGRCm38mm10GRCm38
MGSCv371355,794,485 - 55,804,861 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361355,702,746 - 55,713,122 (+)NCBIMGSCv36mm8
Celera1356,747,801 - 56,758,238 (+)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1330.06NCBI
C17h5orf24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8178,928,209 - 8,938,126 (-)NCBIGRCr8
mRatBN7.2178,923,041 - 8,932,958 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,922,675 - 8,933,356 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx178,938,568 - 8,948,505 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01710,468,054 - 10,477,993 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0178,934,958 - 8,944,895 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0179,454,121 - 9,464,076 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,457,719 - 9,458,288 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01711,561,574 - 11,571,515 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41714,950,864 - 14,968,381 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera179,004,898 - 9,014,909 (-)NCBICelera
Cytogenetic Map17p14NCBI
LOC102006745
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540830,044,031 - 30,054,015 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540830,043,402 - 30,054,015 (+)NCBIChiLan1.0ChiLan1.0
C4H5orf24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24130,142,790 - 130,156,556 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15128,282,350 - 128,296,116 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05130,247,436 - 130,261,173 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15136,390,786 - 136,404,092 (+)NCBIpanpan1.1PanPan1.1panPan2
C11H5orf24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11122,913,598 - 22,924,979 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1122,920,483 - 22,922,639 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1121,662,999 - 21,674,347 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01123,720,333 - 23,731,688 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1123,720,338 - 23,731,688 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11122,419,597 - 22,430,943 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01122,285,523 - 22,296,881 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01122,927,875 - 22,939,230 (+)NCBIUU_Cfam_GSD_1.0
CUNH5orf24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213123,044,958 - 123,055,178 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365972,069,854 - 2,079,441 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365972,069,845 - 2,079,458 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C2H5orf24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2137,037,929 - 137,049,447 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12137,037,971 - 137,049,449 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22142,654,058 - 142,665,529 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH5orf24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12337,632,974 - 37,647,009 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603440,271,573 - 40,285,654 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH5orf24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473312,211,551 - 12,218,986 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473312,208,397 - 12,218,942 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 5q23.3-33.2(chr5:130860928-155321811)x3 copy number gain See cases [RCV000051193] Chr5:130860928..155321811 [GRCh38]
Chr5:130196621..154701371 [GRCh37]
Chr5:130224520..154681564 [NCBI36]
Chr5:5q23.3-33.2		 pathogenic
GRCh38/hg38 5q31.1(chr5:132816203-135383158)x1 copy number loss See cases [RCV000052113] Chr5:132816203..135383158 [GRCh38]
Chr5:132151895..134718848 [GRCh37]
Chr5:132179794..134746747 [NCBI36]
Chr5:5q31.1		 pathogenic
GRCh38/hg38 5q31.1-31.2(chr5:133401565-138437038)x1 copy number loss See cases [RCV000052114] Chr5:133401565..138437038 [GRCh38]
Chr5:132737257..137772727 [GRCh37]
Chr5:132765156..137800626 [NCBI36]
Chr5:5q31.1-31.2		 pathogenic
GRCh38/hg38 5q31.1(chr5:133531234-134847678)x1 copy number loss See cases [RCV000052115] Chr5:133531234..134847678 [GRCh38]
Chr5:132866925..134183368 [GRCh37]
Chr5:132894824..134211267 [NCBI36]
Chr5:5q31.1		 pathogenic
GRCh38/hg38 5q21.3-33.2(chr5:106619588-156124387)x1 copy number loss See cases [RCV000053524] Chr5:106619588..156124387 [GRCh38]
Chr5:105955289..155551397 [GRCh37]
Chr5:105983188..155483975 [NCBI36]
Chr5:5q21.3-33.2		 pathogenic
GRCh38/hg38 5q31.1(chr5:131626503-135815054)x1 copy number loss See cases [RCV000135442] Chr5:131626503..135815054 [GRCh38]
Chr5:130962196..135150743 [GRCh37]
Chr5:130990095..135178642 [NCBI36]
Chr5:5q31.1		 pathogenic
GRCh38/hg38 5q23.3-33.2(chr5:129847794-153353546)x3 copy number gain See cases [RCV000138808] Chr5:129847794..153353546 [GRCh38]
Chr5:129183487..152733106 [GRCh37]
Chr5:129211386..152713299 [NCBI36]
Chr5:5q23.3-33.2		 pathogenic
GRCh37/hg19 5q15-35.3(chr5:94844077-178830410)x3 copy number gain not provided [RCV000487658] Chr5:94844077..178830410 [GRCh37]
Chr5:5q15-35.3		 likely benign
GRCh37/hg19 5q23.3-33.3(chr5:130125085-157574910)x3 copy number gain See cases [RCV000449349] Chr5:130125085..157574910 [GRCh37]
Chr5:5q23.3-33.3		 pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789) copy number gain See cases [RCV000510723] Chr5:113577..180719789 [GRCh37]
Chr5:5p15.33-q35.3		 pathogenic
GRCh37/hg19 5q21.3-35.3(chr5:106716357-180687338)x3 copy number gain See cases [RCV000448245] Chr5:106716357..180687338 [GRCh37]
Chr5:5q21.3-35.3		 pathogenic
NC_000005.9:g.(?_86400000)_(154000000_?)del deletion Familial adenomatous polyposis 1 [RCV002231249]|Hereditary cancer-predisposing syndrome [RCV000554476] Chr5:86400000..154000000 [GRCh37]
Chr5:5q14.3-33.2		 pathogenic
GRCh37/hg19 5p15.1-q35.2(chr5:17628741-176575720)x1 copy number loss See cases [RCV000511978] Chr5:17628741..176575720 [GRCh37]
Chr5:5p15.1-q35.2		 pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789)x3 copy number gain See cases [RCV000512039] Chr5:113577..180719789 [GRCh37]
Chr5:5p15.33-q35.3		 pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:25328-180693344)x3 copy number gain not provided [RCV000744323] Chr5:25328..180693344 [GRCh37]
Chr5:5p15.33-q35.3		 pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:13648-180905029)x3 copy number gain not provided [RCV000744317] Chr5:13648..180905029 [GRCh37]
Chr5:5p15.33-q35.3		 pathogenic
GRCh37/hg19 5q23.2-31.2(chr5:126377719-136270989)x1 copy number loss not provided [RCV000762739] Chr5:126377719..136270989 [GRCh37]
Chr5:5q23.2-31.2		 likely pathogenic
Single allele deletion Neurodevelopmental disorder [RCV000787436] Chr5:14685137..149511942 [GRCh37]
Chr5:5p15.2-q32		 uncertain significance
GRCh37/hg19 5q31.1(chr5:132829317-134983855) copy number loss not specified [RCV002053531] Chr5:132829317..134983855 [GRCh37]
Chr5:5q31.1		 uncertain significance
GRCh37/hg19 5q23.3-33.3(chr5:130125085-157574910) copy number gain not specified [RCV002053526] Chr5:130125085..157574910 [GRCh37]
Chr5:5q23.3-33.3		 pathogenic
GRCh37/hg19 5q31.1-31.2(chr5:132031902-137623639) copy number loss not specified [RCV002053530] Chr5:132031902..137623639 [GRCh37]
Chr5:5q31.1-31.2		 pathogenic
NC_000005.9:g.(?_133533463)_(135398915_?)dup duplication not provided [RCV001966204] Chr5:133533463..135398915 [GRCh37]
Chr5:5q31.1		 uncertain significance
GRCh37/hg19 5q31.1(chr5:133713529-134383753)x3 copy number gain not provided [RCV003484628] Chr5:133713529..134383753 [GRCh37]
Chr5:5q31.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4520
Count of miRNA genes:981
Interacting mature miRNAs:1203
Transcripts:ENST00000338051, ENST00000394976, ENST00000435259, ENST00000504727, ENST00000507390, ENST00000508791
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH103405  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375134,180,801 - 134,180,920UniSTSGRCh37
Build 365134,208,700 - 134,208,819RGDNCBI36
Celera5130,308,496 - 130,308,615RGD
Cytogenetic Map5q31.1UniSTS
HuRef5129,367,015 - 129,367,134UniSTS
GeneMap99-GB4 RH Map5511.69UniSTS
SHGC-64770  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375134,194,484 - 134,194,653UniSTSGRCh37
Build 365134,222,383 - 134,222,552RGDNCBI36
Celera5130,322,789 - 130,322,958RGD
Cytogenetic Map5q31.1UniSTS
HuRef5129,380,702 - 129,380,871UniSTS
TNG Radiation Hybrid Map561609.0UniSTS
RH47430  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375134,195,203 - 134,195,328UniSTSGRCh37
Build 365134,223,102 - 134,223,227RGDNCBI36
Celera5130,323,508 - 130,323,633RGD
Cytogenetic Map5q31.1UniSTS
HuRef5129,381,421 - 129,381,546UniSTS
GeneMap99-GB4 RH Map5509.51UniSTS
A007F30  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375134,195,147 - 134,195,288UniSTSGRCh37
Build 365134,223,046 - 134,223,187RGDNCBI36
Celera5130,323,452 - 130,323,593RGD
Cytogenetic Map5q31.1UniSTS
HuRef5129,381,365 - 129,381,506UniSTS
GeneMap99-GB4 RH Map5511.69UniSTS
STS-N26241  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5q31.1UniSTS
HuRef5129,380,505 - 129,380,634UniSTS
GeneMap99-GB4 RH Map5512.9UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2258 1580 1630 540 1107 388 3485 1241 2981 362 1398 1604 167 1193 2051 5
Low 181 1313 96 84 746 77 872 956 753 57 62 9 8 1 11 737 1 2
Below cutoff 98 98

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001135586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001300894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_152409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005271889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC006077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF085880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ437658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK094881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK130086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV707506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC045567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX640771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX648529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA433671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA760705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000338051   ⟹   ENSP00000337044
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,845,680 - 134,859,109 (+)Ensembl
RefSeq Acc Id: ENST00000394976   ⟹   ENSP00000378427
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,845,968 - 134,859,735 (+)Ensembl
RefSeq Acc Id: ENST00000435259   ⟹   ENSP00000395764
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,846,154 - 134,855,488 (+)Ensembl
RefSeq Acc Id: ENST00000504727   ⟹   ENSP00000421647
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,846,096 - 134,859,732 (+)Ensembl
RefSeq Acc Id: ENST00000507390   ⟹   ENSP00000426824
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,854,950 - 134,857,412 (+)Ensembl
RefSeq Acc Id: ENST00000508791   ⟹   ENSP00000422620
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,846,246 - 134,854,922 (+)Ensembl
RefSeq Acc Id: NM_001135586   ⟹   NP_001129058
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,845,968 - 134,859,735 (+)NCBI
GRCh375134,181,370 - 134,195,425 (+)RGD
GRCh375134,181,370 - 134,195,425 (+)NCBI
Celera5130,309,065 - 130,323,730 (+)RGD
HuRef5129,367,584 - 129,381,643 (+)ENTREZGENE
CHM1_15133,614,286 - 133,628,061 (+)NCBI
T2T-CHM13v2.05135,372,921 - 135,386,687 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001300894   ⟹   NP_001287823
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,845,968 - 134,859,735 (+)NCBI
CHM1_15133,614,286 - 133,628,061 (+)NCBI
T2T-CHM13v2.05135,372,921 - 135,386,687 (+)NCBI
Sequence:
RefSeq Acc Id: NM_152409   ⟹   NP_689622
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,845,680 - 134,859,735 (+)NCBI
GRCh375134,181,370 - 134,195,425 (+)RGD
GRCh375134,181,370 - 134,195,425 (+)NCBI
Build 365134,209,269 - 134,222,687 (+)NCBI Archive
Celera5130,309,065 - 130,323,730 (+)RGD
HuRef5129,367,584 - 129,381,643 (+)ENTREZGENE
CHM1_15133,613,998 - 133,628,061 (+)NCBI
T2T-CHM13v2.05135,372,633 - 135,386,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005271889   ⟹   XP_005271946
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,845,968 - 134,859,735 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017009049   ⟹   XP_016864538
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,846,266 - 134,859,735 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017009050   ⟹   XP_016864539
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,833,602 - 134,859,735 (+)NCBI
Sequence:
RefSeq Acc Id: XM_054351651   ⟹   XP_054207626
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05135,372,905 - 135,386,687 (+)NCBI
RefSeq Acc Id: XM_054351652   ⟹   XP_054207627
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05135,373,219 - 135,386,687 (+)NCBI
RefSeq Acc Id: XM_054351653   ⟹   XP_054207628
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05135,360,554 - 135,386,687 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_689622   ⟸   NM_152409
- Peptide Label: isoform 1
- UniProtKB: Q86Y53 (UniProtKB/Swiss-Prot),   D3DQA7 (UniProtKB/Swiss-Prot),   Q8N1T9 (UniProtKB/Swiss-Prot),   Q7Z6I8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001129058   ⟸   NM_001135586
- Peptide Label: isoform 1
- UniProtKB: Q86Y53 (UniProtKB/Swiss-Prot),   D3DQA7 (UniProtKB/Swiss-Prot),   Q8N1T9 (UniProtKB/Swiss-Prot),   Q7Z6I8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005271946   ⟸   XM_005271889
- Peptide Label: isoform X1
- UniProtKB: Q86Y53 (UniProtKB/Swiss-Prot),   D3DQA7 (UniProtKB/Swiss-Prot),   Q8N1T9 (UniProtKB/Swiss-Prot),   Q7Z6I8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001287823   ⟸   NM_001300894
- Peptide Label: isoform 2
- UniProtKB: Q7Z6I8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016864539   ⟸   XM_017009050
- Peptide Label: isoform X1
- UniProtKB: Q86Y53 (UniProtKB/Swiss-Prot),   D3DQA7 (UniProtKB/Swiss-Prot),   Q8N1T9 (UniProtKB/Swiss-Prot),   Q7Z6I8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016864538   ⟸   XM_017009049
- Peptide Label: isoform X1
- UniProtKB: Q86Y53 (UniProtKB/Swiss-Prot),   D3DQA7 (UniProtKB/Swiss-Prot),   Q8N1T9 (UniProtKB/Swiss-Prot),   Q7Z6I8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000421647   ⟸   ENST00000504727
RefSeq Acc Id: ENSP00000426824   ⟸   ENST00000507390
RefSeq Acc Id: ENSP00000422620   ⟸   ENST00000508791
RefSeq Acc Id: ENSP00000337044   ⟸   ENST00000338051
RefSeq Acc Id: ENSP00000378427   ⟸   ENST00000394976
RefSeq Acc Id: ENSP00000395764   ⟸   ENST00000435259
RefSeq Acc Id: XP_054207628   ⟸   XM_054351653
- Peptide Label: isoform X1
- UniProtKB: Q86Y53 (UniProtKB/Swiss-Prot),   Q7Z6I8 (UniProtKB/Swiss-Prot),   D3DQA7 (UniProtKB/Swiss-Prot),   Q8N1T9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054207626   ⟸   XM_054351651
- Peptide Label: isoform X1
- UniProtKB: Q86Y53 (UniProtKB/Swiss-Prot),   Q7Z6I8 (UniProtKB/Swiss-Prot),   D3DQA7 (UniProtKB/Swiss-Prot),   Q8N1T9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054207627   ⟸   XM_054351652
- Peptide Label: isoform X1
- UniProtKB: Q86Y53 (UniProtKB/Swiss-Prot),   Q7Z6I8 (UniProtKB/Swiss-Prot),   D3DQA7 (UniProtKB/Swiss-Prot),   Q8N1T9 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7Z6I8-F1-model_v2 AlphaFold Q7Z6I8 1-188 view protein structure

Promoters
RGD ID:6802849
Promoter ID:HG_KWN:51131
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000394976,   NM_152409,   UC003KZY.2
Position:
Human AssemblyChrPosition (strand)Source
Build 365134,209,321 - 134,209,821 (+)MPROMDB
RGD ID:6802850
Promoter ID:HG_KWN:51132
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:ENST00000338051,   UC003LAA.2
Position:
Human AssemblyChrPosition (strand)Source
Build 365134,218,826 - 134,221,177 (+)MPROMDB
RGD ID:6870624
Promoter ID:EPDNEW_H8477
Type:initiation region
Name:C5orf24_1
Description:chromosome 5 open reading frame 24
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,845,996 - 134,846,056EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:26746 AgrOrtholog
COSMIC C5orf24 COSMIC
Ensembl Genes ENSG00000181904 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000338051 ENTREZGENE
  ENST00000338051.4 UniProtKB/Swiss-Prot
  ENST00000394976 ENTREZGENE
  ENST00000394976.4 UniProtKB/Swiss-Prot
  ENST00000435259 ENTREZGENE
  ENST00000435259.2 UniProtKB/Swiss-Prot
  ENST00000504727 ENTREZGENE
  ENST00000504727.1 UniProtKB/Swiss-Prot
  ENST00000507390.1 UniProtKB/TrEMBL
  ENST00000508791.1 UniProtKB/TrEMBL
GTEx ENSG00000181904 GTEx
HGNC ID HGNC:26746 ENTREZGENE
Human Proteome Map C5orf24 Human Proteome Map
InterPro DUF5568 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:134553 UniProtKB/Swiss-Prot
NCBI Gene 134553 ENTREZGENE
PANTHER PTHR31894 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UPF0461 PROTEIN C5ORF24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF5568 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA144596505 PharmGKB
UniProt A0A1Y8EJU8_HUMAN UniProtKB/TrEMBL
  CE024_HUMAN UniProtKB/Swiss-Prot
  D3DQA7 ENTREZGENE
  H0YAE0_HUMAN UniProtKB/TrEMBL
  Q7Z6I8 ENTREZGENE
  Q86Y53 ENTREZGENE
  Q8N1T9 ENTREZGENE
UniProt Secondary D3DQA7 UniProtKB/Swiss-Prot
  Q86Y53 UniProtKB/Swiss-Prot
  Q8N1T9 UniProtKB/Swiss-Prot