SUGT1P1 (SUGT1 pseudogene 1) - Rat Genome Database

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Gene: SUGT1P1 (SUGT1 pseudogene 1) Homo sapiens
Analyze
Symbol: SUGT1P1
Name: SUGT1 pseudogene 1
RGD ID: 1605159
HGNC Page HGNC:19384
Description: INTERACTS WITH 17beta-estradiol; aflatoxin B1; arsane
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: bA255A11.1; MGC15151; SGT1 homolog, MIS12 kinetochore complex assembly cochaperone pseudogene 1; SGT1P; SUGT1P
Related Functional Gene: SUGT1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38933,500,756 - 33,511,166 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl933,503,655 - 33,510,711 (-)EnsemblGRCh38hg38GRCh38
GRCh37933,500,754 - 33,511,164 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36933,499,507 - 33,511,047 (-)NCBINCBI36Build 36hg18NCBI36
Celera933,430,827 - 33,441,237 (-)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef933,456,762 - 33,467,171 (-)NCBIHuRef
CHM1_1933,500,522 - 33,510,926 (-)NCBICHM1_1
T2T-CHM13v2.0933,519,262 - 33,529,671 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16344560  


Genomics

Variants

.
Variants in SUGT1P1
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:39
Interacting mature miRNAs:39
Transcripts:ENST00000379514
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 6 5 2 25 3 14 7 8 3 374 51 1 1
Low 1964 1818 1426 297 713 184 3940 2086 3236 369 1004 1524 123 1168 2451 3
Below cutoff 376 736 249 279 491 236 359 98 451 39 42 25 44 35 301

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000379514
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl933,503,655 - 33,510,711 (-)Ensembl
RefSeq Acc Id: NR_003667
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38933,500,756 - 33,511,166 (-)NCBI
GRCh37933,500,754 - 33,511,164 (-)RGD
Celera933,430,827 - 33,441,237 (-)RGD
HuRef933,456,762 - 33,467,171 (-)ENTREZGENE
CHM1_1933,500,522 - 33,510,926 (-)NCBI
T2T-CHM13v2.0933,519,262 - 33,529,671 (-)NCBI
Sequence:
Promoters
RGD ID:6808306
Promoter ID:HG_KWN:62931
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000401941,   NR_003667,   UC010MJQ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36933,500,911 - 33,501,411 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
COSMIC SUGT1P1 COSMIC
Ensembl Genes ENSG00000226823 Ensembl
GTEx ENSG00000226823 GTEx
HGNC ID HGNC:19384 ENTREZGENE
Human Proteome Map SUGT1P1 Human Proteome Map
NCBI Gene 441394 ENTREZGENE
PharmGKB PA134946357 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-04-03 SUGT1P1  SUGT1 pseudogene 1    SGT1 homolog, MIS12 kinetochore complex assembly cochaperone pseudogene 1  Symbol and/or name change 5135510 APPROVED
2015-09-29 SUGT1P1  SGT1 homolog, MIS12 kinetochore complex assembly cochaperone pseudogene 1    SUGT1 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2013-10-22 SUGT1P1  SUGT1 pseudogene 1    suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-07-27 SUGT1P1  suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 1  SUGT1P  suppressor of G2 allele of SKP1 pseudogene (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED