STK40 (serine/threonine kinase 40) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: STK40 (serine/threonine kinase 40) Homo sapiens
Analyze
Symbol: STK40
Name: serine/threonine kinase 40
RGD ID: 1605028
HGNC Page HGNC:21373
Description: Predicted to enable ATP binding activity; protein serine kinase activity; and protein serine/threonine kinase activity. Predicted to act upstream of or within several processes, including glycogen metabolic process; lung development; and respiratory system process. Located in cytosol and nucleoplasm.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310004N11Rik; MGC4796; RP11-268J15.4; Ser/Thr-like kinase; serine/threonine-protein kinase 40; SgK495; SHIK; SINK-homologous serine/threonine-protein kinase; sugen kinase 495
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38136,339,628 - 36,385,924 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl136,339,624 - 36,385,924 (-)EnsemblGRCh38hg38GRCh38
GRCh37136,805,229 - 36,851,525 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36136,577,812 - 36,624,072 (-)NCBINCBI36Build 36hg18NCBI36
Celera135,080,354 - 35,126,619 (-)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef134,921,985 - 34,968,132 (-)NCBIHuRef
CHM1_1136,921,399 - 36,967,662 (-)NCBICHM1_1
T2T-CHM13v2.0136,202,501 - 36,248,808 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IDA)
nucleoplasm  (IDA)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11076863   PMID:11230166   PMID:12477932   PMID:13679039   PMID:14702039   PMID:15489334   PMID:15489336   PMID:16169070   PMID:16344560   PMID:16381901   PMID:16710414   PMID:18029348  
PMID:19953087   PMID:21784977   PMID:21832049   PMID:23226273   PMID:23233723   PMID:24447338   PMID:24510904   PMID:25609649   PMID:25852190   PMID:26186194   PMID:26344197   PMID:26496610  
PMID:28089446   PMID:28419554   PMID:28514442   PMID:32296183   PMID:32707033   PMID:33961781   PMID:35140242   PMID:35748872   PMID:37689310   PMID:37915566  


Genomics

Comparative Map Data
STK40
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38136,339,628 - 36,385,924 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl136,339,624 - 36,385,924 (-)EnsemblGRCh38hg38GRCh38
GRCh37136,805,229 - 36,851,525 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36136,577,812 - 36,624,072 (-)NCBINCBI36Build 36hg18NCBI36
Celera135,080,354 - 35,126,619 (-)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef134,921,985 - 34,968,132 (-)NCBIHuRef
CHM1_1136,921,399 - 36,967,662 (-)NCBICHM1_1
T2T-CHM13v2.0136,202,501 - 36,248,808 (-)NCBIT2T-CHM13v2.0
Stk40
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394125,997,738 - 126,034,822 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4125,997,750 - 126,034,822 (+)EnsemblGRCm39 Ensembl
GRCm384126,103,942 - 126,141,029 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4126,103,957 - 126,141,029 (+)EnsemblGRCm38mm10GRCm38
MGSCv374125,781,201 - 125,818,273 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364125,606,302 - 125,643,186 (+)NCBIMGSCv36mm8
Celera4124,434,390 - 124,471,601 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map459.89NCBI
Stk40
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85143,660,438 - 143,702,336 (+)NCBIGRCr8
mRatBN7.25138,380,049 - 138,417,802 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5138,381,159 - 138,417,796 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5141,091,338 - 141,127,768 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05142,861,353 - 142,897,785 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05142,862,520 - 142,898,947 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05144,112,612 - 144,150,653 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5144,114,012 - 144,150,647 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05147,882,697 - 147,920,188 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45145,457,719 - 145,494,354 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15145,467,710 - 145,504,226 (+)NCBI
Celera5136,891,355 - 136,927,933 (+)NCBICelera
Cytogenetic Map5q36NCBI
Stk40
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545214,301,533 - 14,345,988 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545214,298,759 - 14,345,293 (-)NCBIChiLan1.0ChiLan1.0
STK40
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21190,458,775 - 190,504,982 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11189,580,004 - 189,626,203 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0135,607,231 - 35,653,443 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1136,775,581 - 36,821,654 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl136,775,581 - 36,821,654 (-)Ensemblpanpan1.1panPan2
STK40
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1155,894,125 - 5,934,461 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl155,894,933 - 5,932,791 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha156,136,970 - 6,176,979 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0156,029,736 - 6,069,743 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl156,030,291 - 6,069,741 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1155,883,149 - 5,923,136 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0155,950,874 - 5,990,846 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0155,965,960 - 6,005,961 (+)NCBIUU_Cfam_GSD_1.0
Stk40
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505852,946,652 - 52,991,269 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647418,771,358 - 18,816,098 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647418,771,434 - 18,816,086 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STK40
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl692,441,233 - 92,484,336 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1692,441,231 - 92,484,363 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
STK40
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12096,473,456 - 96,520,683 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2096,473,527 - 96,520,769 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603320,217,574 - 20,265,834 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stk40
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476419,255,300 - 19,287,162 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476419,255,300 - 19,298,956 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in STK40
18 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p36.11-34.2(chr1:24381206-41401517)x3 copy number gain See cases [RCV000138891] Chr1:24381206..41401517 [GRCh38]
Chr1:24707696..41886350 [GRCh37]
Chr1:24580283..41658937 [NCBI36]
Chr1:1p36.11-34.2
pathogenic
GRCh38/hg38 1p34.3(chr1:35934217-36821999)x4 copy number gain See cases [RCV000138892] Chr1:35934217..36821999 [GRCh38]
Chr1:36399818..37287600 [GRCh37]
Chr1:36172405..37060187 [NCBI36]
Chr1:1p34.3
likely pathogenic
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12
likely benign
GRCh37/hg19 1p34.3(chr1:34830287-36945093)x1 copy number loss See cases [RCV000448022] Chr1:34830287..36945093 [GRCh37]
Chr1:1p34.3
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
NC_000001.10:g.(?_33241563)_(46663513_?)dup duplication Charcot-Marie-Tooth disease dominant intermediate C [RCV000708276] Chr1:33241563..46663513 [GRCh37]
Chr1:1p35.1-34.1
uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p35.2-34.3(chr1:31562164-37421958)x3 copy number gain not provided [RCV000748949] Chr1:31562164..37421958 [GRCh37]
Chr1:1p35.2-34.3
pathogenic
NM_001282547.2(STK40):c.1101G>A (p.Thr367=) single nucleotide variant not provided [RCV000965549] Chr1:36341962 [GRCh38]
Chr1:36807563 [GRCh37]
Chr1:1p34.3
benign
NM_001282547.2(STK40):c.879T>C (p.Ile293=) single nucleotide variant not provided [RCV000965550] Chr1:36344125 [GRCh38]
Chr1:36809726 [GRCh37]
Chr1:1p34.3
benign
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3 copy number gain Global developmental delay [RCV000787285] Chr1:103343285..103455144 [GRCh37]
Chr1:1p36.22-21.1
uncertain significance
GRCh37/hg19 1p34.3(chr1:36496921-36829945)x3 copy number gain not provided [RCV000847964] Chr1:36496921..36829945 [GRCh37]
Chr1:1p34.3
uncertain significance
NC_000001.10:g.(?_33241563)_(46663513_?)dup duplication Charcot-Marie-Tooth disease, dominant intermediate C [RCV001308684] Chr1:33241563..46663513 [GRCh37]
Chr1:1p35.1-34.1
uncertain significance
GRCh37/hg19 1p34.3(chr1:36041366-39112237) copy number loss not specified [RCV002053236] Chr1:36041366..39112237 [GRCh37]
Chr1:1p34.3
uncertain significance
GRCh37/hg19 1p35.1-33(chr1:33285582-47891811) copy number gain not specified [RCV002052781] Chr1:33285582..47891811 [GRCh37]
Chr1:1p35.1-33
pathogenic
GRCh37/hg19 1p34.3(chr1:35104233-37357913)x1 copy number loss not provided [RCV002474552] Chr1:35104233..37357913 [GRCh37]
Chr1:1p34.3
pathogenic
NM_001282547.2(STK40):c.305C>T (p.Thr102Met) single nucleotide variant Inborn genetic diseases [RCV002684609] Chr1:36358276 [GRCh38]
Chr1:36823877 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_001282547.2(STK40):c.868G>A (p.Glu290Lys) single nucleotide variant Inborn genetic diseases [RCV002734623] Chr1:36344136 [GRCh38]
Chr1:36809737 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_001282547.2(STK40):c.617A>G (p.Asn206Ser) single nucleotide variant Inborn genetic diseases [RCV002882741] Chr1:36354370 [GRCh38]
Chr1:36819971 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_001282547.2(STK40):c.41C>T (p.Ser14Leu) single nucleotide variant Inborn genetic diseases [RCV002705128] Chr1:36361292 [GRCh38]
Chr1:36826893 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_001282547.2(STK40):c.240C>G (p.Ser80Arg) single nucleotide variant Inborn genetic diseases [RCV002919543] Chr1:36358341 [GRCh38]
Chr1:36823942 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_001282547.2(STK40):c.460G>A (p.Ala154Thr) single nucleotide variant Inborn genetic diseases [RCV002827537] Chr1:36355316 [GRCh38]
Chr1:36820917 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_001282547.2(STK40):c.339C>A (p.Phe113Leu) single nucleotide variant Inborn genetic diseases [RCV002809829] Chr1:36358242 [GRCh38]
Chr1:36823843 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_001282547.2(STK40):c.167A>G (p.Lys56Arg) single nucleotide variant Inborn genetic diseases [RCV002807412] Chr1:36358768 [GRCh38]
Chr1:36824369 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_001282547.2(STK40):c.1198C>A (p.Pro400Thr) single nucleotide variant Inborn genetic diseases [RCV002940563] Chr1:36341865 [GRCh38]
Chr1:36807466 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_001282547.2(STK40):c.1235G>A (p.Arg412Gln) single nucleotide variant Inborn genetic diseases [RCV002722944] Chr1:36341828 [GRCh38]
Chr1:36807429 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_001282547.2(STK40):c.1213G>A (p.Gly405Ser) single nucleotide variant Inborn genetic diseases [RCV003280807] Chr1:36341850 [GRCh38]
Chr1:36807451 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_001282547.2(STK40):c.347G>A (p.Arg116His) single nucleotide variant Inborn genetic diseases [RCV003192336] Chr1:36355429 [GRCh38]
Chr1:36821030 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_001282547.2(STK40):c.161C>T (p.Ala54Val) single nucleotide variant Inborn genetic diseases [RCV003283088] Chr1:36358774 [GRCh38]
Chr1:36824375 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_001282547.2(STK40):c.331G>A (p.Gly111Ser) single nucleotide variant Inborn genetic diseases [RCV003369362] Chr1:36358250 [GRCh38]
Chr1:36823851 [GRCh37]
Chr1:1p34.3
uncertain significance
Single allele inversion Bilateral polymicrogyria [RCV003459046] Chr1:33246132..61045156 [GRCh38]
Chr1:1p35.1-31.3
likely pathogenic
NM_001282547.2(STK40):c.438T>C (p.Ala146=) single nucleotide variant not provided [RCV003406347] Chr1:36355338 [GRCh38]
Chr1:36820939 [GRCh37]
Chr1:1p34.3
likely benign
miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR940hsa-miR-940Mirtarbaseexternal_infoCLASHFunctional MTI (Weak)23622248
MIR31hsa-miR-31-5pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI23233723

Predicted Target Of
Summary Value
Count of predictions:10107
Count of miRNA genes:1154
Interacting mature miRNAs:1467
Transcripts:ENST00000359297, ENST00000373129, ENST00000373130, ENST00000373132, ENST00000460017, ENST00000460417, ENST00000473733, ENST00000482458
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-142395  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37136,833,178 - 36,833,486UniSTSGRCh37
Build 36136,605,765 - 36,606,073RGDNCBI36
Celera135,108,312 - 35,108,620RGD
Cytogenetic Map1p34.3UniSTS
HuRef134,949,947 - 34,950,255UniSTS
TNG Radiation Hybrid Map117651.0UniSTS
A008P26  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37136,807,167 - 36,807,371UniSTSGRCh37
Build 36136,579,754 - 36,579,958RGDNCBI36
Celera135,082,296 - 35,082,500RGD
Cytogenetic Map1p34.3UniSTS
HuRef134,923,927 - 34,924,131UniSTS
GeneMap99-GB4 RH Map1111.15UniSTS
NCBI RH Map1251.9UniSTS
SHGC-74578  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37136,807,097 - 36,807,229UniSTSGRCh37
Build 36136,579,684 - 36,579,816RGDNCBI36
Celera135,082,226 - 35,082,358RGD
Cytogenetic Map1p34.3UniSTS
HuRef134,923,857 - 34,923,989UniSTS
TNG Radiation Hybrid Map117626.0UniSTS
GeneMap99-GB4 RH Map1109.51UniSTS
Whitehead-RH Map1110.9UniSTS
NCBI RH Map1233.4UniSTS
SHGC-74593  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37136,805,376 - 36,805,504UniSTSGRCh37
Build 36136,577,963 - 36,578,091RGDNCBI36
Celera135,080,505 - 35,080,633RGD
Cytogenetic Map1p34.3UniSTS
HuRef134,922,136 - 34,922,264UniSTS
TNG Radiation Hybrid Map117626.0UniSTS
GeneMap99-GB4 RH Map1110.37UniSTS
NCBI RH Map1228.6UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2420 2856 1635 579 1918 421 4349 2092 2458 389 1440 1602 171 1204 2787 4
Low 14 130 90 43 30 44 6 101 1253 29 11 7 1 1
Below cutoff 2 2 2 12 1 7 1 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001282546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_032017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC119675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK024504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL834137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW269508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY198395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ834750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ834752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA375448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT585098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000359297   ⟹   ENSP00000352245
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl136,339,624 - 36,361,340 (-)Ensembl
RefSeq Acc Id: ENST00000373129   ⟹   ENSP00000362221
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl136,339,624 - 36,385,884 (-)Ensembl
RefSeq Acc Id: ENST00000373130   ⟹   ENSP00000362222
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl136,339,624 - 36,385,888 (-)Ensembl
RefSeq Acc Id: ENST00000373132   ⟹   ENSP00000362224
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl136,339,628 - 36,385,924 (-)Ensembl
RefSeq Acc Id: ENST00000460017
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl136,367,854 - 36,385,876 (-)Ensembl
RefSeq Acc Id: ENST00000460417
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl136,355,205 - 36,366,072 (-)Ensembl
RefSeq Acc Id: ENST00000473733
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl136,355,253 - 36,362,656 (-)Ensembl
RefSeq Acc Id: ENST00000482458
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl136,355,289 - 36,385,879 (-)Ensembl
RefSeq Acc Id: NM_001282546   ⟹   NP_001269475
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38136,339,628 - 36,385,924 (-)NCBI
HuRef134,921,980 - 34,968,175 (-)NCBI
CHM1_1136,921,394 - 36,967,705 (-)NCBI
T2T-CHM13v2.0136,202,501 - 36,248,808 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001282547   ⟹   NP_001269476
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38136,339,628 - 36,385,924 (-)NCBI
HuRef134,921,980 - 34,968,175 (-)NCBI
CHM1_1136,921,394 - 36,967,705 (-)NCBI
T2T-CHM13v2.0136,202,501 - 36,248,808 (-)NCBI
Sequence:
RefSeq Acc Id: NM_032017   ⟹   NP_114406
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38136,339,628 - 36,385,924 (-)NCBI
GRCh37136,805,225 - 36,851,525 (-)NCBI
Build 36136,577,812 - 36,624,072 (-)NCBI Archive
Celera135,080,354 - 35,126,619 (-)RGD
HuRef134,921,980 - 34,968,175 (-)NCBI
CHM1_1136,921,394 - 36,967,705 (-)NCBI
T2T-CHM13v2.0136,202,501 - 36,248,808 (-)NCBI
Sequence:
RefSeq Acc Id: NP_114406   ⟸   NM_032017
- Peptide Label: isoform 2
- UniProtKB: Q9BSA3 (UniProtKB/Swiss-Prot),   Q96I44 (UniProtKB/Swiss-Prot),   Q96HN6 (UniProtKB/Swiss-Prot),   Q8N3I6 (UniProtKB/Swiss-Prot),   Q8N2J8 (UniProtKB/Swiss-Prot),   Q6ZMN1 (UniProtKB/Swiss-Prot),   Q5VTK9 (UniProtKB/Swiss-Prot),   Q5VTK8 (UniProtKB/Swiss-Prot),   D3DPS8 (UniProtKB/Swiss-Prot),   Q9H7H6 (UniProtKB/Swiss-Prot),   Q8N2I9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001269476   ⟸   NM_001282547
- Peptide Label: isoform 2
- UniProtKB: Q9BSA3 (UniProtKB/Swiss-Prot),   Q96I44 (UniProtKB/Swiss-Prot),   Q96HN6 (UniProtKB/Swiss-Prot),   Q8N3I6 (UniProtKB/Swiss-Prot),   Q8N2J8 (UniProtKB/Swiss-Prot),   Q6ZMN1 (UniProtKB/Swiss-Prot),   Q5VTK9 (UniProtKB/Swiss-Prot),   Q5VTK8 (UniProtKB/Swiss-Prot),   D3DPS8 (UniProtKB/Swiss-Prot),   Q9H7H6 (UniProtKB/Swiss-Prot),   Q8N2I9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001269475   ⟸   NM_001282546
- Peptide Label: isoform 1
- UniProtKB: Q8N2I9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000352245   ⟸   ENST00000359297
RefSeq Acc Id: ENSP00000362221   ⟸   ENST00000373129
RefSeq Acc Id: ENSP00000362222   ⟸   ENST00000373130
RefSeq Acc Id: ENSP00000362224   ⟸   ENST00000373132
Protein Domains
Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8N2I9-F1-model_v2 AlphaFold Q8N2I9 1-435 view protein structure

Promoters
RGD ID:6854984
Promoter ID:EPDNEW_H657
Type:single initiation site
Name:STK40_3
Description:serine/threonine kinase 40
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H658  EPDNEW_H659  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38136,369,826 - 36,369,886EPDNEW
RGD ID:6854986
Promoter ID:EPDNEW_H658
Type:initiation region
Name:STK40_1
Description:serine/threonine kinase 40
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H657  EPDNEW_H659  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38136,385,915 - 36,385,975EPDNEW
RGD ID:6854988
Promoter ID:EPDNEW_H659
Type:initiation region
Name:STK40_2
Description:serine/threonine kinase 40
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H657  EPDNEW_H658  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38136,386,531 - 36,386,591EPDNEW
RGD ID:6786941
Promoter ID:HG_KWN:2017
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:ENST00000359297
Position:
Human AssemblyChrPosition (strand)Source
Build 36136,599,546 - 36,600,046 (-)MPROMDB
RGD ID:6786943
Promoter ID:HG_KWN:2019
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   Lymphoblastoid
Transcripts:OTTHUMT00000022768
Position:
Human AssemblyChrPosition (strand)Source
Build 36136,604,369 - 36,604,869 (-)MPROMDB
RGD ID:6786961
Promoter ID:HG_KWN:2020
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000373130,   NM_032017,   OTTHUMT00000022595,   OTTHUMT00000022767,   OTTHUMT00000022948,   UC009VVA.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36136,623,826 - 36,625,052 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:21373 AgrOrtholog
COSMIC STK40 COSMIC
Ensembl Genes ENSG00000196182 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000359297.6 UniProtKB/Swiss-Prot
  ENST00000373129 ENTREZGENE
  ENST00000373129.7 UniProtKB/Swiss-Prot
  ENST00000373130 ENTREZGENE
  ENST00000373130.7 UniProtKB/Swiss-Prot
  ENST00000373132 ENTREZGENE
  ENST00000373132.4 UniProtKB/Swiss-Prot
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot
GTEx ENSG00000196182 GTEx
HGNC ID HGNC:21373 ENTREZGENE
Human Proteome Map STK40 Human Proteome Map
InterPro Kinase-like_dom_sf UniProtKB/Swiss-Prot
  Prot_kinase_dom UniProtKB/Swiss-Prot
  Ser/Thr_kinase_40 UniProtKB/Swiss-Prot
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot
  Tribbles/Ser_Thr_kinase_40 UniProtKB/Swiss-Prot
KEGG Report hsa:83931 UniProtKB/Swiss-Prot
NCBI Gene 83931 ENTREZGENE
OMIM 609437 OMIM
PANTHER PTHR22961 UniProtKB/Swiss-Prot
  SERINE/THREONINE-PROTEIN KINASE 40 UniProtKB/Swiss-Prot
Pfam Pkinase UniProtKB/Swiss-Prot
PharmGKB PA142670860 PharmGKB
PROSITE PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot
SMART S_TKc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot
UniProt D3DPS8 ENTREZGENE
  Q5VTK8 ENTREZGENE
  Q5VTK9 ENTREZGENE
  Q6ZMN1 ENTREZGENE
  Q8N2I9 ENTREZGENE
  Q8N2J8 ENTREZGENE
  Q8N3I6 ENTREZGENE
  Q96HN6 ENTREZGENE
  Q96I44 ENTREZGENE
  Q9BSA3 ENTREZGENE
  Q9H7H6 ENTREZGENE
  STK40_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary D3DPS8 UniProtKB/Swiss-Prot
  Q5VTK8 UniProtKB/Swiss-Prot
  Q5VTK9 UniProtKB/Swiss-Prot
  Q6ZMN1 UniProtKB/Swiss-Prot
  Q8N2J8 UniProtKB/Swiss-Prot
  Q8N3I6 UniProtKB/Swiss-Prot
  Q96HN6 UniProtKB/Swiss-Prot
  Q96I44 UniProtKB/Swiss-Prot
  Q9BSA3 UniProtKB/Swiss-Prot
  Q9H7H6 UniProtKB/Swiss-Prot