FNDC7 (fibronectin type III domain containing 7) - Rat Genome Database

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Gene: FNDC7 (fibronectin type III domain containing 7) Homo sapiens
Analyze
Symbol: FNDC7
Name: fibronectin type III domain containing 7
RGD ID: 1604516
HGNC Page HGNC:26668
Description: Predicted to be located in extracellular region.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: fibronectin type III domain-containing protein 7; FLJ35838; MGC163293; RP11-293A10.2
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381108,712,908 - 108,742,749 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1108,712,908 - 108,742,749 (+)EnsemblGRCh38hg38GRCh38
GRCh371109,255,530 - 109,285,371 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361109,066,556 - 109,086,888 (+)NCBINCBI36Build 36hg18NCBI36
Celera1107,525,376 - 107,555,183 (+)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1107,148,408 - 107,178,212 (+)NCBIHuRef
CHM1_11109,370,409 - 109,400,224 (+)NCBICHM1_1
T2T-CHM13v2.01108,746,166 - 108,775,994 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Autism  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14702039   PMID:30404004   PMID:32393512   PMID:36626432  


Genomics

Comparative Map Data
FNDC7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381108,712,908 - 108,742,749 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1108,712,908 - 108,742,749 (+)EnsemblGRCh38hg38GRCh38
GRCh371109,255,530 - 109,285,371 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361109,066,556 - 109,086,888 (+)NCBINCBI36Build 36hg18NCBI36
Celera1107,525,376 - 107,555,183 (+)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1107,148,408 - 107,178,212 (+)NCBIHuRef
CHM1_11109,370,409 - 109,400,224 (+)NCBICHM1_1
T2T-CHM13v2.01108,746,166 - 108,775,994 (+)NCBIT2T-CHM13v2.0
Fndc7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393108,760,898 - 108,797,324 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3108,760,994 - 108,797,324 (-)EnsemblGRCm39 Ensembl
GRCm383108,853,678 - 108,890,008 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3108,853,678 - 108,890,008 (-)EnsemblGRCm38mm10GRCm38
MGSCv373108,656,596 - 108,692,926 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363108,983,377 - 109,017,926 (-)NCBIMGSCv36mm8
Celera3111,188,275 - 111,224,485 (-)NCBICelera
Cytogenetic Map3F3NCBI
cM Map347.84NCBI
Fndc7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82199,189,029 - 199,226,425 (-)NCBIGRCr8
mRatBN7.22196,501,313 - 196,537,816 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2196,502,460 - 196,537,694 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2204,145,167 - 204,180,774 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02202,026,964 - 202,062,237 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02196,843,954 - 196,879,298 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02211,655,482 - 211,690,802 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2211,655,482 - 211,690,716 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02231,129,567 - 231,164,934 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42204,456,114 - 204,493,579 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12204,419,090 - 204,456,331 (-)NCBI
Celera2189,149,953 - 189,186,014 (-)NCBICelera
Cytogenetic Map2q34NCBI
Fndc7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543512,185,187 - 12,208,334 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543512,185,187 - 12,213,242 (+)NCBIChiLan1.0ChiLan1.0
FNDC7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21118,561,765 - 118,594,305 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11117,721,658 - 117,754,179 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01111,085,903 - 111,107,599 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11110,253,665 - 110,283,403 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1110,253,665 - 110,278,221 (+)Ensemblpanpan1.1panPan2
FNDC7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1643,002,942 - 43,032,370 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl643,003,190 - 43,032,321 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha645,777,418 - 45,806,872 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0643,334,732 - 43,364,414 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl643,335,844 - 43,364,341 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1643,065,094 - 43,094,553 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0643,023,540 - 43,053,208 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0643,465,280 - 43,495,944 (-)NCBIUU_Cfam_GSD_1.0
Fndc7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505819,789,059 - 19,812,154 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936704294,810 - 324,045 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936704300,128 - 325,028 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FNDC7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4111,299,353 - 111,328,378 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14111,299,357 - 111,328,550 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24121,796,974 - 121,829,631 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FNDC7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12024,843,700 - 24,873,784 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2024,844,658 - 24,872,768 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603833,473,933 - 33,494,610 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fndc7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247724,499,892 - 4,539,599 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FNDC7
22 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p21.2-13.2(chr1:101618097-111703028)x1 copy number loss See cases [RCV000053879] Chr1:101618097..111703028 [GRCh38]
Chr1:102083653..112245650 [GRCh37]
Chr1:101856241..112047173 [NCBI36]
Chr1:1p21.2-13.2
pathogenic
GRCh38/hg38 1p21.1-13.3(chr1:106074587-110144290)x1 copy number loss See cases [RCV000053881] Chr1:106074587..110144290 [GRCh38]
Chr1:106617209..110686912 [GRCh37]
Chr1:106418732..110488435 [NCBI36]
Chr1:1p21.1-13.3
pathogenic
GRCh38/hg38 1p21.3-13.3(chr1:97410602-110670510)x1 copy number loss See cases [RCV000053877] Chr1:97410602..110670510 [GRCh38]
Chr1:97876158..111213132 [GRCh37]
Chr1:97648746..111014655 [NCBI36]
Chr1:1p21.3-13.3
pathogenic
NM_001144937.1(FNDC7):c.897C>T (p.Pro299=) single nucleotide variant Malignant melanoma [RCV000059828] Chr1:108725790 [GRCh38]
Chr1:109268412 [GRCh37]
Chr1:109069935 [NCBI36]
Chr1:1p13.3
not provided
GRCh38/hg38 1p21.3-13.3(chr1:97272349-108893138)x1 copy number loss See cases [RCV000135333] Chr1:97272349..108893138 [GRCh38]
Chr1:97737905..109435760 [GRCh37]
Chr1:97510493..109237283 [NCBI36]
Chr1:1p21.3-13.3
pathogenic
GRCh38/hg38 1p21.1-12(chr1:104325484-119977655)x3 copy number gain See cases [RCV000142953] Chr1:104325484..119977655 [GRCh38]
Chr1:104868106..120471049 [GRCh37]
Chr1:104669629..120321801 [NCBI36]
Chr1:1p21.1-12
pathogenic
GRCh38/hg38 1p21.1-13.2(chr1:105468292-112190626)x1 copy number loss See cases [RCV000142760] Chr1:105468292..112190626 [GRCh38]
Chr1:106010914..112733248 [GRCh37]
Chr1:105812437..112534771 [NCBI36]
Chr1:1p21.1-13.2
pathogenic
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12
likely benign
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
NM_001144937.3(FNDC7):c.1997G>C (p.Gly666Ala) single nucleotide variant Inborn genetic diseases [RCV003280927] Chr1:108733389 [GRCh38]
Chr1:109276011 [GRCh37]
Chr1:1p13.3
uncertain significance
GRCh37/hg19 1p22.1-11.2(chr1:93837992-121343783)x3 copy number gain See cases [RCV000512354] Chr1:93837992..121343783 [GRCh37]
Chr1:1p22.1-11.2
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
NC_000001.11:g.(?_103175204)_(111410059_?)del deletion Autism [RCV000754122] Chr1:103175204..111410059 [GRCh38]
Chr1:1p21.1-13.2
likely pathogenic
GRCh37/hg19 1p22.1-13.3(chr1:94054724-111671707)x3 copy number gain not provided [RCV000749068] Chr1:94054724..111671707 [GRCh37]
Chr1:1p22.1-13.3
pathogenic
Single allele deletion 1p13.3 deletion syndrome [RCV000786772] Chr1:107779092..111199205 [GRCh37]
Chr1:1p13.3
likely pathogenic
Single allele deletion not provided [RCV000844956] Chr1:108926313..111266497 [GRCh37]
Chr1:1p13.3
not provided
NC_000001.10:g.(?_108679275)_(111674176_?)del deletion Hereditary spastic paraplegia 63 [RCV003105726] Chr1:108679275..111674176 [GRCh37]
Chr1:1p13.3
pathogenic
NM_001144937.3(FNDC7):c.1088G>T (p.Gly363Val) single nucleotide variant Inborn genetic diseases [RCV003253512] Chr1:108725981 [GRCh38]
Chr1:109268603 [GRCh37]
Chr1:1p13.3
uncertain significance
GRCh37/hg19 1p13.3(chr1:108769288-109425488)x3 copy number gain not provided [RCV001258447] Chr1:108769288..109425488 [GRCh37]
Chr1:1p13.3
uncertain significance
GRCh37/hg19 1p21.2-12(chr1:102021465-119737478) copy number loss Seizure [RCV001352640] Chr1:102021465..119737478 [GRCh37]
Chr1:1p21.2-12
pathogenic
GRCh37/hg19 1p13.3(chr1:108346477-110177123)x1 copy number loss not provided [RCV001827629] Chr1:108346477..110177123 [GRCh37]
Chr1:1p13.3
uncertain significance
GRCh37/hg19 1p21.3-13.2(chr1:95046805-114714931) copy number loss not specified [RCV002053503] Chr1:95046805..114714931 [GRCh37]
Chr1:1p21.3-13.2
pathogenic
NC_000001.10:g.(?_108679275)_(109493059_?)del deletion not provided [RCV003122418] Chr1:108679275..109493059 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.1738A>G (p.Thr580Ala) single nucleotide variant Inborn genetic diseases [RCV003276444] Chr1:108730787 [GRCh38]
Chr1:109273409 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.913G>C (p.Val305Leu) single nucleotide variant not provided [RCV002291432] Chr1:108725806 [GRCh38]
Chr1:109268428 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.291C>A (p.Ser97Arg) single nucleotide variant Inborn genetic diseases [RCV002990394] Chr1:108717985 [GRCh38]
Chr1:109260607 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.1436G>A (p.Arg479Gln) single nucleotide variant Inborn genetic diseases [RCV002906403] Chr1:108728698 [GRCh38]
Chr1:109271320 [GRCh37]
Chr1:1p13.3
likely benign
NM_001144937.3(FNDC7):c.1271C>T (p.Ser424Leu) single nucleotide variant Inborn genetic diseases [RCV002772586] Chr1:108727967 [GRCh38]
Chr1:109270589 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.802G>A (p.Ala268Thr) single nucleotide variant Inborn genetic diseases [RCV002973424] Chr1:108722538 [GRCh38]
Chr1:109265160 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.685T>C (p.Phe229Leu) single nucleotide variant Inborn genetic diseases [RCV002779775] Chr1:108722421 [GRCh38]
Chr1:109265043 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.401A>G (p.Glu134Gly) single nucleotide variant Inborn genetic diseases [RCV002749370] Chr1:108718852 [GRCh38]
Chr1:109261474 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.1003A>C (p.Thr335Pro) single nucleotide variant Inborn genetic diseases [RCV002884809] Chr1:108725896 [GRCh38]
Chr1:109268518 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.2123C>T (p.Pro708Leu) single nucleotide variant Inborn genetic diseases [RCV002694260] Chr1:108733515 [GRCh38]
Chr1:109276137 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.19A>T (p.Thr7Ser) single nucleotide variant Inborn genetic diseases [RCV002692932] Chr1:108712952 [GRCh38]
Chr1:109255574 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.1892C>T (p.Pro631Leu) single nucleotide variant Inborn genetic diseases [RCV002782283] Chr1:108733284 [GRCh38]
Chr1:109275906 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.158C>G (p.Pro53Arg) single nucleotide variant Inborn genetic diseases [RCV002874809] Chr1:108717852 [GRCh38]
Chr1:109260474 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.1933C>T (p.Arg645Trp) single nucleotide variant Inborn genetic diseases [RCV002892747] Chr1:108733325 [GRCh38]
Chr1:109275947 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.1588C>T (p.Arg530Trp) single nucleotide variant Inborn genetic diseases [RCV002644681] Chr1:108728850 [GRCh38]
Chr1:109271472 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.1265C>A (p.Thr422Asn) single nucleotide variant Inborn genetic diseases [RCV002988337] Chr1:108727961 [GRCh38]
Chr1:109270583 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.1760C>T (p.Thr587Ile) single nucleotide variant Inborn genetic diseases [RCV002831318] Chr1:108730809 [GRCh38]
Chr1:109273431 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.2106G>T (p.Leu702Phe) single nucleotide variant Inborn genetic diseases [RCV002655554] Chr1:108733498 [GRCh38]
Chr1:109276120 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.292G>A (p.Ala98Thr) single nucleotide variant Inborn genetic diseases [RCV002722507] Chr1:108717986 [GRCh38]
Chr1:109260608 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.1832G>A (p.Ser611Asn) single nucleotide variant Inborn genetic diseases [RCV003356912] Chr1:108730881 [GRCh38]
Chr1:109273503 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.599G>A (p.Ser200Asn) single nucleotide variant Inborn genetic diseases [RCV003360310] Chr1:108722335 [GRCh38]
Chr1:109264957 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.2006C>T (p.Thr669Met) single nucleotide variant Inborn genetic diseases [RCV003359943] Chr1:108733398 [GRCh38]
Chr1:109276020 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.242C>T (p.Thr81Met) single nucleotide variant Inborn genetic diseases [RCV003356106] Chr1:108717936 [GRCh38]
Chr1:109260558 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.1958G>T (p.Gly653Val) single nucleotide variant Inborn genetic diseases [RCV003356166] Chr1:108733350 [GRCh38]
Chr1:109275972 [GRCh37]
Chr1:1p13.3
uncertain significance
GRCh37/hg19 1p13.3(chr1:109069332-109366802)x3 copy number gain not provided [RCV003484026] Chr1:109069332..109366802 [GRCh37]
Chr1:1p13.3
uncertain significance
NM_001144937.3(FNDC7):c.429C>T (p.Ser143=) single nucleotide variant not provided [RCV003406640] Chr1:108718880 [GRCh38]
Chr1:109261502 [GRCh37]
Chr1:1p13.3
likely benign
NM_001144937.3(FNDC7):c.1818A>G (p.Thr606=) single nucleotide variant not provided [RCV003406641] Chr1:108730867 [GRCh38]
Chr1:109273489 [GRCh37]
Chr1:1p13.3
likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:964
Count of miRNA genes:400
Interacting mature miRNAs:433
Transcripts:ENST00000271311, ENST00000370017, ENST00000445274
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 2 1
Low 5 20 114 2 84 2 112 3 333 381 17 3
Below cutoff 1530 2202 985 300 1288 186 3217 1226 3214 124 661 1067 122 855 2094

Sequence


RefSeq Acc Id: ENST00000370017   ⟹   ENSP00000359034
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1108,712,908 - 108,742,749 (+)Ensembl
RefSeq Acc Id: ENST00000445274   ⟹   ENSP00000405986
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1108,722,411 - 108,742,056 (+)Ensembl
RefSeq Acc Id: NM_001144937   ⟹   NP_001138409
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381108,712,908 - 108,742,749 (+)NCBI
GRCh371109,255,556 - 109,285,371 (+)RGD
Celera1107,525,376 - 107,555,183 (+)RGD
HuRef1107,148,408 - 107,178,212 (+)RGD
CHM1_11109,370,409 - 109,400,224 (+)NCBI
T2T-CHM13v2.01108,746,166 - 108,775,994 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001138409 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH57762 (Get FASTA)   NCBI Sequence Viewer  
  AAI30422 (Get FASTA)   NCBI Sequence Viewer  
  BAC04077 (Get FASTA)   NCBI Sequence Viewer  
  EAW56329 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000359034
  ENSP00000359034.3
  ENSP00000405986.1
GenBank Protein Q5VTL7 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001138409   ⟸   NM_001144937
- Peptide Label: precursor
- UniProtKB: Q6PF16 (UniProtKB/Swiss-Prot),   E9PAZ5 (UniProtKB/Swiss-Prot),   A1L468 (UniProtKB/Swiss-Prot),   Q8NA51 (UniProtKB/Swiss-Prot),   Q5VTL7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000359034   ⟸   ENST00000370017
RefSeq Acc Id: ENSP00000405986   ⟸   ENST00000445274
Protein Domains
Fibronectin type-III

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5VTL7-F1-model_v2 AlphaFold Q5VTL7 1-733 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:26668 AgrOrtholog
COSMIC FNDC7 COSMIC
Ensembl Genes ENSG00000143107 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000370017 ENTREZGENE
  ENST00000370017.9 UniProtKB/Swiss-Prot
  ENST00000445274.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000143107 GTEx
HGNC ID HGNC:26668 ENTREZGENE
Human Proteome Map FNDC7 Human Proteome Map
InterPro FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:163479 UniProtKB/Swiss-Prot
NCBI Gene 163479 ENTREZGENE
PANTHER FIBRONECTIN TYPE III DOMAIN-CONTAINING PROTEIN 7 UniProtKB/Swiss-Prot
  FIBRONECTIN TYPE III DOMAIN-CONTAINING PROTEIN 7 UniProtKB/Swiss-Prot
  FIBRONECTIN TYPE III DOMAIN-CONTAINING PROTEIN 7 UniProtKB/TrEMBL
  FIBRONECTIN TYPE III DOMAIN-CONTAINING PROTEIN 7 UniProtKB/TrEMBL
PharmGKB PA142671756 PharmGKB
PROSITE FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A1L468 ENTREZGENE
  E9PAZ5 ENTREZGENE
  FNDC7_HUMAN UniProtKB/Swiss-Prot
  H7C2H6_HUMAN UniProtKB/TrEMBL
  Q5VTL7 ENTREZGENE
  Q6PF16 ENTREZGENE
  Q8NA51 ENTREZGENE
UniProt Secondary A1L468 UniProtKB/Swiss-Prot
  E9PAZ5 UniProtKB/Swiss-Prot
  Q6PF16 UniProtKB/Swiss-Prot
  Q8NA51 UniProtKB/Swiss-Prot