FAM76A (family with sequence similarity 76 member A) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: FAM76A (family with sequence similarity 76 member A) Homo sapiens
Analyze
Symbol: FAM76A
Name: family with sequence similarity 76 member A
RGD ID: 1604511
HGNC Page HGNC:28530
Description: Located in nucleoplasm.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: family with sequence similarity 76, member A; FLJ41946; hypothetical protein LOC199870; MGC34648; RP3-426I6.1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,725,961 - 27,763,116 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,725,961 - 27,763,116 (+)EnsemblGRCh38hg38GRCh38
GRCh37128,052,472 - 28,089,627 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,925,077 - 27,960,702 (+)NCBINCBI36Build 36hg18NCBI36
Celera126,448,136 - 26,485,071 (+)NCBICelera
Cytogenetic Map1p35.3NCBI
HuRef126,308,650 - 26,345,507 (+)NCBIHuRef
CHM1_1128,167,718 - 28,204,615 (+)NCBICHM1_1
T2T-CHM13v2.0127,567,254 - 27,604,410 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nuclear speck  (IBA,IEA)
nucleoplasm  (IDA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14702039   PMID:15489334   PMID:16710414   PMID:17207965   PMID:19266028   PMID:19322201   PMID:21873635   PMID:24981860   PMID:30021884   PMID:35271311   PMID:35944360  


Genomics

Comparative Map Data
FAM76A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,725,961 - 27,763,116 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,725,961 - 27,763,116 (+)EnsemblGRCh38hg38GRCh38
GRCh37128,052,472 - 28,089,627 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,925,077 - 27,960,702 (+)NCBINCBI36Build 36hg18NCBI36
Celera126,448,136 - 26,485,071 (+)NCBICelera
Cytogenetic Map1p35.3NCBI
HuRef126,308,650 - 26,345,507 (+)NCBIHuRef
CHM1_1128,167,718 - 28,204,615 (+)NCBICHM1_1
T2T-CHM13v2.0127,567,254 - 27,604,410 (+)NCBIT2T-CHM13v2.0
Fam76a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394132,626,524 - 132,649,849 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4132,626,524 - 132,649,869 (-)EnsemblGRCm39 Ensembl
GRCm384132,899,213 - 132,922,760 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4132,899,213 - 132,922,558 (-)EnsemblGRCm38mm10GRCm38
MGSCv374132,455,128 - 132,478,466 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364132,172,694 - 132,194,587 (-)NCBIMGSCv36mm8
Celera4131,060,432 - 131,083,761 (-)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map466.01NCBI
Fam76a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85150,391,460 - 150,419,526 (-)NCBIGRCr8
mRatBN7.25145,107,491 - 145,135,734 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5145,107,491 - 145,135,574 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5147,807,196 - 147,835,186 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05149,576,798 - 149,604,788 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05149,565,444 - 149,593,499 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05151,087,962 - 151,117,142 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5151,089,900 - 151,117,042 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05156,075,874 - 156,086,506 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.05154,755,362 - 154,784,778 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45152,218,077 - 152,246,849 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15152,228,140 - 152,255,519 (+)NCBI
Celera5143,530,570 - 143,558,504 (-)NCBICelera
Cytogenetic Map5q36NCBI
Fam76a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554526,932,229 - 6,967,303 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554526,932,229 - 6,963,044 (+)NCBIChiLan1.0ChiLan1.0
FAM76A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21199,088,004 - 199,126,487 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11198,204,451 - 198,242,681 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,987,794 - 27,025,752 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1128,030,387 - 28,066,606 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl128,030,502 - 28,068,228 (+)Ensemblpanpan1.1panPan2
FAM76A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,590,913 - 72,617,175 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl272,552,093 - 72,618,190 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha269,168,892 - 69,195,151 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0273,152,778 - 73,179,111 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl273,153,678 - 73,179,060 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1269,979,264 - 70,005,544 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0270,990,047 - 71,016,300 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0271,986,440 - 72,012,951 (-)NCBIUU_Cfam_GSD_1.0
Fam76a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505846,159,174 - 46,186,167 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647411,983,939 - 12,010,964 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647411,984,172 - 12,010,941 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM76A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl684,880,035 - 84,910,381 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1684,880,040 - 84,910,384 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2678,416,232 - 78,446,600 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM76A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120105,033,617 - 105,069,878 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20105,031,464 - 105,069,842 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603311,395,133 - 11,433,164 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam76a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476411,574,877 - 11,608,423 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476411,574,609 - 11,608,235 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FAM76A
3 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p36.11-35.2(chr1:26963045-32279045)x3 copy number gain See cases [RCV000051801] Chr1:26963045..32279045 [GRCh38]
Chr1:27289536..32744646 [GRCh37]
Chr1:27162123..32517233 [NCBI36]
Chr1:1p36.11-35.2
pathogenic
GRCh38/hg38 1p35.3(chr1:27601122-27889441)x1 copy number loss See cases [RCV000053801] Chr1:27601122..27889441 [GRCh38]
Chr1:27927633..28215952 [GRCh37]
Chr1:27800220..28088539 [NCBI36]
Chr1:1p35.3
pathogenic
GRCh38/hg38 1p36.11-34.2(chr1:24381206-41401517)x3 copy number gain See cases [RCV000138891] Chr1:24381206..41401517 [GRCh38]
Chr1:24707696..41886350 [GRCh37]
Chr1:24580283..41658937 [NCBI36]
Chr1:1p36.11-34.2
pathogenic
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12
likely benign
GRCh37/hg19 1p36.11-35.3(chr1:27488298-28138628)x1 copy number loss See cases [RCV000447976] Chr1:27488298..28138628 [GRCh37]
Chr1:1p36.11-35.3
uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p35.3(chr1:28062107-28148561)x3 copy number gain not provided [RCV000736456] Chr1:28062107..28148561 [GRCh37]
Chr1:1p35.3
benign
NM_152660.3(FAM76A):c.568A>C (p.Lys190Gln) single nucleotide variant Inborn genetic diseases [RCV003244654] Chr1:27749123 [GRCh38]
Chr1:28075634 [GRCh37]
Chr1:1p35.3
uncertain significance
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3 copy number gain Global developmental delay [RCV000787285] Chr1:103343285..103455144 [GRCh37]
Chr1:1p36.22-21.1
uncertain significance
NM_152660.3(FAM76A):c.226A>G (p.Ile76Val) single nucleotide variant Inborn genetic diseases [RCV003295572] Chr1:27734055 [GRCh38]
Chr1:28060566 [GRCh37]
Chr1:1p35.3
uncertain significance
GRCh37/hg19 1p36.11-35.3(chr1:27488298-28138628) copy number loss not specified [RCV002052448] Chr1:27488298..28138628 [GRCh37]
Chr1:1p36.11-35.3
pathogenic
GRCh37/hg19 1p36.11-35.1(chr1:27543877-32819121) copy number gain not specified [RCV002052559] Chr1:27543877..32819121 [GRCh37]
Chr1:1p36.11-35.1
uncertain significance
NM_152660.3(FAM76A):c.19T>C (p.Cys7Arg) single nucleotide variant Inborn genetic diseases [RCV003184147] Chr1:27726099 [GRCh38]
Chr1:28052610 [GRCh37]
Chr1:1p35.3
uncertain significance
NM_152660.3(FAM76A):c.89G>A (p.Arg30Gln) single nucleotide variant Inborn genetic diseases [RCV003347367] Chr1:27727479 [GRCh38]
Chr1:28053990 [GRCh37]
Chr1:1p35.3
uncertain significance
NM_152660.3(FAM76A):c.27G>C (p.Lys9Asn) single nucleotide variant Inborn genetic diseases [RCV003376376] Chr1:27726107 [GRCh38]
Chr1:28052618 [GRCh37]
Chr1:1p35.3
uncertain significance
GRCh38/hg38 1p36.33-35.1(chr1:99125-34026935)x3 copy number gain Trisomy 12p [RCV003447845] Chr1:99125..34026935 [GRCh38]
Chr1:1p36.33-35.1
pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2333
Count of miRNA genes:775
Interacting mature miRNAs:912
Transcripts:ENST00000010299, ENST00000234549, ENST00000373949, ENST00000373954, ENST00000419687, ENST00000446647, ENST00000530324
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D14S779  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map2q37.3UniSTS
Marshfield Genetic Map1495.89UniSTS
Marshfield Genetic Map1495.89RGD
RH66767  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37128,051,403 - 28,051,523UniSTSGRCh37
Build 36127,923,990 - 27,924,110RGDNCBI36
Celera126,447,049 - 26,447,169RGD
Cytogenetic Map1p35.3UniSTS
HuRef126,307,563 - 26,307,683UniSTS
GeneMap99-GB4 RH Map192.86UniSTS
NCBI RH Map1142.5UniSTS
RH93638  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37128,089,262 - 28,089,432UniSTSGRCh37
Build 36127,961,849 - 27,962,019RGDNCBI36
Celera126,484,907 - 26,485,077RGD
Cytogenetic Map1p35.3UniSTS
HuRef126,345,343 - 26,345,513UniSTS
GeneMap99-GB4 RH Map192.73UniSTS
RH47146  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37176,546,296 - 6,546,425UniSTSGRCh37
GRCh37128,065,907 - 28,066,333UniSTSGRCh37
Build 36127,938,494 - 27,938,920RGDNCBI36
Celera126,461,552 - 26,461,978RGD
Celera176,567,352 - 6,567,481UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map1p35.3UniSTS
HuRef126,322,067 - 26,322,493UniSTS
HuRef176,441,580 - 6,441,709UniSTS
GeneMap99-GB4 RH Map1753.39UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 870 887 867 25 317 19 2611 451 1313 123 1047 1063 9 635 1575 3
Low 1569 2069 858 598 1600 445 1746 1745 2420 295 413 550 165 1 569 1213 3 2
Below cutoff 35 1 1 34 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001143912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001143913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001143914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001143915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_152660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017000543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054334876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK098318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK123940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL020997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL035307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL035309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000010299   ⟹   ENSP00000010299
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl127,726,057 - 27,760,581 (+)Ensembl
RefSeq Acc Id: ENST00000234549   ⟹   ENSP00000234549
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl127,726,028 - 27,760,581 (+)Ensembl
RefSeq Acc Id: ENST00000373949   ⟹   ENSP00000363060
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl127,726,028 - 27,761,964 (+)Ensembl
RefSeq Acc Id: ENST00000373954   ⟹   ENSP00000363065
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl127,725,961 - 27,763,116 (+)Ensembl
RefSeq Acc Id: ENST00000419687   ⟹   ENSP00000395150
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl127,725,996 - 27,761,473 (+)Ensembl
RefSeq Acc Id: ENST00000446647   ⟹   ENSP00000393171
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl127,744,774 - 27,760,185 (+)Ensembl
RefSeq Acc Id: ENST00000530324   ⟹   ENSP00000436176
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl127,726,028 - 27,759,764 (+)Ensembl
RefSeq Acc Id: NM_001143912   ⟹   NP_001137384
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38127,725,961 - 27,763,116 (+)NCBI
GRCh37128,052,490 - 28,089,426 (+)RGD
Celera126,448,136 - 26,485,071 (+)RGD
HuRef126,308,650 - 26,345,507 (+)RGD
CHM1_1128,167,718 - 28,204,615 (+)NCBI
T2T-CHM13v2.0127,567,254 - 27,604,410 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001143913   ⟹   NP_001137385
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38127,725,961 - 27,763,116 (+)NCBI
GRCh37128,052,490 - 28,089,426 (+)RGD
Celera126,448,136 - 26,485,071 (+)RGD
HuRef126,308,650 - 26,345,507 (+)RGD
CHM1_1128,167,718 - 28,204,615 (+)NCBI
T2T-CHM13v2.0127,567,254 - 27,604,410 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001143914   ⟹   NP_001137386
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38127,725,961 - 27,763,116 (+)NCBI
GRCh37128,052,490 - 28,089,426 (+)RGD
Celera126,448,136 - 26,485,071 (+)RGD
HuRef126,308,650 - 26,345,507 (+)RGD
CHM1_1128,167,718 - 28,204,615 (+)NCBI
T2T-CHM13v2.0127,567,254 - 27,604,410 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001143915   ⟹   NP_001137387
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38127,725,961 - 27,763,116 (+)NCBI
GRCh37128,052,490 - 28,089,426 (+)RGD
Celera126,448,136 - 26,485,071 (+)RGD
HuRef126,308,650 - 26,345,507 (+)RGD
CHM1_1128,167,718 - 28,204,615 (+)NCBI
T2T-CHM13v2.0127,567,254 - 27,604,410 (+)NCBI
Sequence:
RefSeq Acc Id: NM_152660   ⟹   NP_689873
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38127,725,961 - 27,763,116 (+)NCBI
GRCh37128,052,490 - 28,089,426 (+)RGD
Build 36127,925,077 - 27,960,702 (+)NCBI Archive
Celera126,448,136 - 26,485,071 (+)RGD
HuRef126,308,650 - 26,345,507 (+)RGD
CHM1_1128,167,718 - 28,204,615 (+)NCBI
T2T-CHM13v2.0127,567,254 - 27,604,410 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017000543   ⟹   XP_016856032
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38127,725,961 - 27,751,546 (+)NCBI
Sequence:
RefSeq Acc Id: XM_054334876   ⟹   XP_054190851
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0127,567,254 - 27,592,839 (+)NCBI
RefSeq Acc Id: NP_001137384   ⟸   NM_001143912
- Peptide Label: isoform 1
- UniProtKB: A8K255 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001137385   ⟸   NM_001143913
- Peptide Label: isoform 2
- UniProtKB: A8K255 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001137386   ⟸   NM_001143914
- Peptide Label: isoform 4
- UniProtKB: A8K255 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_689873   ⟸   NM_152660
- Peptide Label: isoform 3
- UniProtKB: O95566 (UniProtKB/Swiss-Prot),   O95565 (UniProtKB/Swiss-Prot),   B4DWT3 (UniProtKB/Swiss-Prot),   Q8N7J5 (UniProtKB/Swiss-Prot),   Q8TAV0 (UniProtKB/Swiss-Prot),   A8K255 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001137387   ⟸   NM_001143915
- Peptide Label: isoform 5
- UniProtKB: A8K255 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016856032   ⟸   XM_017000543
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSP00000436176   ⟸   ENST00000530324
RefSeq Acc Id: ENSP00000363065   ⟸   ENST00000373954
RefSeq Acc Id: ENSP00000363060   ⟸   ENST00000373949
RefSeq Acc Id: ENSP00000395150   ⟸   ENST00000419687
RefSeq Acc Id: ENSP00000234549   ⟸   ENST00000234549
RefSeq Acc Id: ENSP00000010299   ⟸   ENST00000010299
RefSeq Acc Id: ENSP00000393171   ⟸   ENST00000446647
RefSeq Acc Id: XP_054190851   ⟸   XM_054334876
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8TAV0-F1-model_v2 AlphaFold Q8TAV0 1-307 view protein structure

Promoters
RGD ID:6854692
Promoter ID:EPDNEW_H511
Type:initiation region
Name:FAM76A_1
Description:family with sequence similarity 76 member A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38127,725,984 - 27,726,044EPDNEW
RGD ID:6785555
Promoter ID:HG_KWN:1592
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000373948,   NM_001143912,   NM_001143913,   NM_001143914,   NM_001143915,   OTTHUMT00000010514,   UC009VTB.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36127,924,556 - 27,925,532 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:28530 AgrOrtholog
COSMIC FAM76A COSMIC
Ensembl Genes ENSG00000009780 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000010299 ENTREZGENE
  ENST00000010299.10 UniProtKB/Swiss-Prot
  ENST00000234549 ENTREZGENE
  ENST00000234549.11 UniProtKB/Swiss-Prot
  ENST00000373949 ENTREZGENE
  ENST00000373949.5 UniProtKB/Swiss-Prot
  ENST00000373954 ENTREZGENE
  ENST00000373954.11 UniProtKB/Swiss-Prot
  ENST00000419687 ENTREZGENE
  ENST00000419687.6 UniProtKB/Swiss-Prot
  ENST00000446647.1 UniProtKB/TrEMBL
  ENST00000530324.5 UniProtKB/TrEMBL
GTEx ENSG00000009780 GTEx
HGNC ID HGNC:28530 ENTREZGENE
Human Proteome Map FAM76A Human Proteome Map
InterPro FAM76 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:199870 UniProtKB/Swiss-Prot
NCBI Gene 199870 ENTREZGENE
PANTHER PTHR46176 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR46176:SF2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FAM76 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA142671837 PharmGKB
UniProt A8K255 ENTREZGENE, UniProtKB/TrEMBL
  B1AJQ5_HUMAN UniProtKB/TrEMBL
  B4DWT3 ENTREZGENE
  E9PQL1_HUMAN UniProtKB/TrEMBL
  FA76A_HUMAN UniProtKB/Swiss-Prot
  O95565 ENTREZGENE
  O95566 ENTREZGENE
  Q8N7J5 ENTREZGENE
  Q8TAV0 ENTREZGENE
UniProt Secondary B4DWT3 UniProtKB/Swiss-Prot
  O95565 UniProtKB/Swiss-Prot
  O95566 UniProtKB/Swiss-Prot
  Q8N7J5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 FAM76A  family with sequence similarity 76 member A    family with sequence similarity 76, member A  Symbol and/or name change 5135510 APPROVED