CREBRF (CREB3 regulatory factor) - Rat Genome Database

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Gene: CREBRF (CREB3 regulatory factor) Homo sapiens
Analyze
Symbol: CREBRF
Name: CREB3 regulatory factor
RGD ID: 1603892
HGNC Page HGNC
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in several processes, including negative regulation of endoplasmic reticulum unfolded protein response; positive regulation of transport; and regulation of transcription by RNA polymerase II. Located in cytoplasm and nuclear body; INTERACTS WITH (-)-demecolcine; (-)-epigallocatechin 3-gallate; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: adult retina protein; C5orf41; DKFZp313F2319; DKFZp686G2059; LRF; luman recruitment factor; luman-recruiting factor; luman/CREB3 recruitment factor; UPF0474 protein C5orf41
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5173,056,352 - 173,139,284 (+)EnsemblGRCh38hg38GRCh38
GRCh385173,056,349 - 173,139,284 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375172,483,355 - 172,566,287 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365172,415,976 - 172,496,576 (+)NCBINCBI36hg18NCBI36
Celera5168,516,821 - 168,599,691 (+)NCBI
Cytogenetic Map5q35.1NCBI
HuRef5167,577,727 - 167,660,756 (+)NCBIHuRef
CHM1_15171,916,093 - 171,998,823 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (EXP)
(-)-epigallocatechin 3-gallate  (EXP)
1,3-dinitrobenzene  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-hydroxypropanoic acid  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
5-aza-2'-deoxycytidine  (EXP)
acrylamide  (EXP,ISO)
aflatoxin B1  (EXP,ISO)
arsane  (EXP)
arsenic atom  (EXP)
avobenzone  (EXP)
benzo[a]pyrene  (EXP)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
chloroprene  (ISO)
cisplatin  (EXP)
cocaine  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (EXP)
crocidolite asbestos  (EXP,ISO)
crotonaldehyde  (EXP)
cyclosporin A  (EXP)
dexamethasone  (EXP)
dioxygen  (EXP,ISO)
dorsomorphin  (EXP)
doxorubicin  (EXP,ISO)
entinostat  (EXP)
ethyl methanesulfonate  (EXP)
fenvalerate  (ISO)
fluoranthene  (ISO)
formaldehyde  (EXP)
hydrogen peroxide  (EXP)
indometacin  (EXP)
leflunomide  (EXP)
metformin  (ISO)
methyl methanesulfonate  (EXP)
methylmercury chloride  (EXP)
methylparaben  (EXP)
miconazole  (ISO)
nickel atom  (EXP)
nickel dichloride  (EXP)
paracetamol  (EXP)
perfluorononanoic acid  (EXP)
potassium chromate  (EXP)
quinolin-8-ol  (EXP)
rac-lactic acid  (EXP)
SB 431542  (EXP)
silicon dioxide  (EXP)
sirolimus  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (EXP)
sunitinib  (EXP)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
thalidomide  (EXP)
titanium dioxide  (ISO)
tremolite asbestos  (ISO)
tris(2-butoxyethyl) phosphate  (EXP)
troglitazone  (ISO)
tunicamycin  (EXP)
urethane  (EXP)
valproic acid  (EXP)
vincristine  (EXP)
zinc atom  (EXP)
zinc(0)  (EXP)

References

Additional References at PubMed
PMID:12477932   PMID:14702039   PMID:16940180   PMID:17353931   PMID:18391022   PMID:19274049   PMID:21873635   PMID:23071095   PMID:25900982   PMID:27278737   PMID:27455349   PMID:28405013  
PMID:28514442   PMID:28928463   PMID:29507755   PMID:29721634   PMID:29729692   PMID:29877158   PMID:29958463   PMID:30021884   PMID:31280340   PMID:31543511   PMID:32190945   PMID:32296183  


Genomics

Comparative Map Data
CREBRF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5173,056,352 - 173,139,284 (+)EnsemblGRCh38hg38GRCh38
GRCh385173,056,349 - 173,139,284 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375172,483,355 - 172,566,287 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365172,415,976 - 172,496,576 (+)NCBINCBI36hg18NCBI36
Celera5168,516,821 - 168,599,691 (+)NCBI
Cytogenetic Map5q35.1NCBI
HuRef5167,577,727 - 167,660,756 (+)NCBIHuRef
CHM1_15171,916,093 - 171,998,823 (+)NCBICHM1_1
Crebrf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,918,716 - 26,995,611 (+)NCBIGRCm39mm39
GRCm39 Ensembl1726,934,624 - 26,995,609 (+)Ensembl
GRCm381726,715,594 - 26,776,637 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1726,715,650 - 26,776,635 (+)EnsemblGRCm38mm10GRCm38
MGSCv371726,852,595 - 26,913,573 (+)NCBIGRCm37mm9NCBIm37
MGSCv361726,443,240 - 26,500,610 (+)NCBImm8
Celera1727,252,264 - 27,313,223 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
Crebrf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21016,399,170 - 16,479,650 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl1016,694,792 - 16,752,205 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01016,693,846 - 16,753,162 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01016,582,414 - 16,661,883 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41016,665,420 - 16,723,929 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11016,668,717 - 16,724,978 (-)NCBI
Celera1016,064,097 - 16,120,536 (-)NCBICelera
Cytogenetic Map10q12NCBI
Crebrf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540825,719,187 - 25,774,555 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540825,718,523 - 25,769,551 (+)NCBIChiLan1.0ChiLan1.0
CREBRF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15175,318,644 - 175,401,330 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5175,318,674 - 175,403,334 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05168,409,668 - 168,492,678 (+)NCBIMhudiblu_PPA_v0panPan3
CREBRF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1439,308,429 - 39,366,031 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl439,313,512 - 39,365,953 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha439,253,882 - 39,311,481 (-)NCBI
ROS_Cfam_1.0439,679,380 - 39,737,014 (-)NCBI
UMICH_Zoey_3.1439,496,142 - 39,553,778 (-)NCBI
UNSW_CanFamBas_1.0439,685,871 - 39,743,521 (-)NCBI
UU_Cfam_GSD_1.0440,194,925 - 40,252,631 (-)NCBI
Crebrf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721393,738,135 - 93,775,972 (-)NCBI
SpeTri2.0NW_0049366092,460,379 - 2,498,614 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CREBRF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1651,150,560 - 51,260,685 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11651,146,015 - 51,210,806 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21655,459,289 - 55,523,885 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CREBRF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12375,219,847 - 75,302,641 (+)NCBI
ChlSab1.1 Ensembl2375,219,873 - 75,297,114 (+)Ensembl
Vero_WHO_p1.0NW_0236660343,307,959 - 3,391,600 (-)NCBI
Crebrf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473316,952,319 - 17,017,396 (-)NCBI

Position Markers
D5S2648  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375172,566,133 - 172,566,262UniSTSGRCh37
Build 365172,498,739 - 172,498,868RGDNCBI36
Celera5168,599,533 - 168,599,662RGD
Cytogenetic Map5q35.1UniSTS
HuRef5167,660,598 - 167,660,727UniSTS
RH45822  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375172,564,568 - 172,564,736UniSTSGRCh37
Build 365172,497,174 - 172,497,342RGDNCBI36
Celera5168,597,968 - 168,598,136RGD
Cytogenetic Map5q35.1UniSTS
HuRef5167,659,033 - 167,659,201UniSTS
GeneMap99-GB4 RH Map5640.77UniSTS
WI-11500  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375172,509,458 - 172,509,583UniSTSGRCh37
Build 365172,442,064 - 172,442,189RGDNCBI36
Celera5168,542,911 - 168,543,036RGD
Cytogenetic Map5q35.1UniSTS
HuRef5167,603,824 - 167,603,949UniSTS
GeneMap99-GB4 RH Map5638.84UniSTS
Whitehead-RH Map5536.5UniSTS
RH91831  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375172,566,082 - 172,566,205UniSTSGRCh37
Build 365172,498,688 - 172,498,811RGDNCBI36
Celera5168,599,482 - 168,599,605RGD
Cytogenetic Map5q35.1UniSTS
HuRef5167,660,547 - 167,660,670UniSTS
GeneMap99-GB4 RH Map5636.91UniSTS
G49564  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375172,521,771 - 172,521,873UniSTSGRCh37
GRCh371162,393,696 - 162,393,794UniSTSGRCh37
Build 361160,660,320 - 160,660,418RGDNCBI36
Celera1135,496,773 - 135,496,871RGD
Celera5168,555,222 - 168,555,324UniSTS
Cytogenetic Map5q35.1UniSTS
HuRef5167,616,087 - 167,616,189UniSTS
HuRef1133,638,463 - 133,638,561UniSTS
TNG Radiation Hybrid Map174364.0UniSTS
bac51086T  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375172,510,553 - 172,510,706UniSTSGRCh37
Build 365172,443,159 - 172,443,312RGDNCBI36
Celera5168,544,006 - 168,544,159RGD
Cytogenetic Map5q35.1UniSTS
HuRef5167,604,910 - 167,605,063UniSTS
bac51877T  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375172,557,392 - 172,557,514UniSTSGRCh37
Build 365172,489,998 - 172,490,120RGDNCBI36
Celera5168,590,804 - 168,590,926RGD
Cytogenetic Map5q35.1UniSTS
HuRef5167,651,689 - 167,651,811UniSTS
RH36114  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375172,562,317 - 172,562,435UniSTSGRCh37
Build 365172,494,923 - 172,495,041RGDNCBI36
Celera5168,595,718 - 168,595,836RGD
Cytogenetic Map5q35.1UniSTS
HuRef5167,656,783 - 167,656,901UniSTS
GeneMap99-GB4 RH Map5636.91UniSTS
SGC44431  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375172,564,305 - 172,564,555UniSTSGRCh37
Build 365172,496,911 - 172,497,161RGDNCBI36
Celera5168,597,705 - 168,597,955RGD
Cytogenetic Map5q35.1UniSTS
HuRef5167,658,770 - 167,659,020UniSTS
GeneMap99-GB4 RH Map5640.87UniSTS
Whitehead-RH Map5535.2UniSTS
D15S1477  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4q32-q35UniSTS
Cytogenetic Map5q11UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map10p12.1-p11.2UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map14q31-q32UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map16p13.13-p13.12UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map1q42.11UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map2q14UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map4q25UniSTS
Cytogenetic Map11q14.2UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map5q23UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map13q12.1UniSTS
Cytogenetic Map6p21.32UniSTS
Cytogenetic Map2q31UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map3p21.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map19pUniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map8q11.21UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map10q23.2UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map1q31.3UniSTS
Cytogenetic Map4q35UniSTS
Cytogenetic Map9p13UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map6q25.2-q25.3UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map7q22.3UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map17q24UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map20q13UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map17q22-q23UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map13q11UniSTS
Cytogenetic MapXp22.3UniSTS
Cytogenetic Map3p25-p24UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map3p12UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic MapXp11.2UniSTS
Cytogenetic Map11q13.1-q13.2UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map10q23.31UniSTS
Cytogenetic Map6p21.1-p12.2UniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map1p35UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map8q23.1UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map14q11.1UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map1p36.11-p34.2UniSTS
Cytogenetic Map9p22UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map9p22.1UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map20p11.23UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map8q12.1UniSTS
Cytogenetic Map14q21.2UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic MapXp11.22UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map18q12.3UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map12q11-q12UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map2p24UniSTS
Cytogenetic Map8q24.21UniSTS
Cytogenetic Map12q22-q23.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map15q21-q22UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map16p13.13UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map10q24UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic Map7p14-p13UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map6q22-q23UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map4q21.22UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map16p12.1UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map11q13.1-q13.3UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map2q24UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map10q25UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map15q21-q23UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map11q12UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map5q35UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map3q25.31UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map11q23.2UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map12q24.11UniSTS
Cytogenetic Map9q21.12UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map20p11.22-p11.1UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map2q24.3UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map6q15UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q11.2-q13.2UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic MapXq13.3UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map4q21.21UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic MapXq21.1UniSTS
Cytogenetic Map10p11.21UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map7q22-q31UniSTS
Cytogenetic Map22q12UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map12q14UniSTS
Cytogenetic Map11q23.1-q23.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map17qUniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map3p25.2UniSTS
Cytogenetic Map5q21.3UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map6p24.2UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5681
Count of miRNA genes:1175
Interacting mature miRNAs:1494
Transcripts:ENST00000296953, ENST00000517882, ENST00000520420, ENST00000520464, ENST00000522692, ENST00000523161, ENST00000540014
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1452 1773 871 111 1039 20 2969 830 1130 163 1073 1266 96 1 936 1883 4 2
Low 983 1216 855 513 911 445 1387 1366 2604 256 386 346 78 268 905 2
Below cutoff 4 2 1 1 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001168393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001168394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_153607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005265821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006714822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011534442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC008378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK124117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK291677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK297424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY139008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY174896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY635785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC041709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000296953   ⟹   ENSP00000296953
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl5173,056,352 - 173,139,284 (+)Ensembl
RefSeq Acc Id: ENST00000517882
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl5173,057,344 - 173,060,455 (+)Ensembl
RefSeq Acc Id: ENST00000520420   ⟹   ENSP00000428290
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl5173,056,368 - 173,091,536 (+)Ensembl
RefSeq Acc Id: ENST00000520464
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl5173,056,390 - 173,124,581 (+)Ensembl
RefSeq Acc Id: ENST00000522692   ⟹   ENSP00000431107
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl5173,056,352 - 173,092,330 (+)Ensembl
RefSeq Acc Id: ENST00000523161   ⟹   ENSP00000430801
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl5173,057,394 - 173,086,569 (+)Ensembl
RefSeq Acc Id: NM_001168393   ⟹   NP_001161865
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385173,056,352 - 173,092,330 (+)NCBI
GRCh375172,483,355 - 172,566,291 (+)RGD
Celera5168,516,821 - 168,599,691 (+)RGD
HuRef5167,577,727 - 167,660,756 (+)ENTREZGENE
CHM1_15171,916,093 - 171,952,046 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001168394   ⟹   NP_001161866
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385173,056,352 - 173,092,330 (+)NCBI
GRCh375172,483,355 - 172,566,291 (+)RGD
Celera5168,516,821 - 168,599,691 (+)RGD
HuRef5167,577,727 - 167,660,756 (+)ENTREZGENE
CHM1_15171,916,093 - 171,952,046 (+)NCBI
Sequence:
RefSeq Acc Id: NM_153607   ⟹   NP_705835
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385173,056,352 - 173,139,284 (+)NCBI
GRCh375172,483,355 - 172,566,291 (+)RGD
Build 365172,415,976 - 172,496,576 (+)NCBI Archive
Celera5168,516,821 - 168,599,691 (+)RGD
HuRef5167,577,727 - 167,660,756 (+)ENTREZGENE
CHM1_15171,916,093 - 171,998,823 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005265821   ⟹   XP_005265878
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385173,056,349 - 173,139,284 (+)NCBI
GRCh375172,483,355 - 172,566,291 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006714822   ⟹   XP_006714885
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385173,057,353 - 173,139,284 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011534442   ⟹   XP_011532744
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385173,056,349 - 173,139,284 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_705835   ⟸   NM_153607
- Peptide Label: isoform 1
- UniProtKB: Q8IUR6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001161865   ⟸   NM_001168393
- Peptide Label: isoform 2
- UniProtKB: Q8IUR6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001161866   ⟸   NM_001168394
- Peptide Label: isoform 2
- UniProtKB: Q8IUR6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005265878   ⟸   XM_005265821
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006714885   ⟸   XM_006714822
- Peptide Label: isoform X1
- UniProtKB: Q8IUR6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011532744   ⟸   XM_011534442
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSP00000296953   ⟸   ENST00000296953
RefSeq Acc Id: ENSP00000428290   ⟸   ENST00000520420
RefSeq Acc Id: ENSP00000431107   ⟸   ENST00000522692
RefSeq Acc Id: ENSP00000430801   ⟸   ENST00000523161
Protein Domains
bZIP

Promoters
RGD ID:6802918
Promoter ID:HG_KWN:51811
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001168393,   NM_001168394,   NM_153607
Position:
Human AssemblyChrPosition (strand)Source
Build 365172,415,641 - 172,416,452 (+)MPROMDB
RGD ID:6871572
Promoter ID:EPDNEW_H8950
Type:initiation region
Name:CREBRF_1
Description:CREB3 regulatory factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H8951  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh385173,056,390 - 173,056,450EPDNEW
RGD ID:6871574
Promoter ID:EPDNEW_H8951
Type:single initiation site
Name:CREBRF_2
Description:CREB3 regulatory factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H8950  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh385173,075,841 - 173,075,901EPDNEW

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 5q32-35.3(chr5:149714592-181272151)x3 copy number gain See cases [RCV000051863] Chr5:149714592..181272151 [GRCh38]
Chr5:149094155..180699152 [GRCh37]
Chr5:149074348..180631758 [NCBI36]
Chr5:5q32-35.3
pathogenic
GRCh38/hg38 5q33.3-35.3(chr5:160029980-181269805)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051865]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051865]|See cases [RCV000051865] Chr5:160029980..181269805 [GRCh38]
Chr5:159456987..180696806 [GRCh37]
Chr5:159389565..180629412 [NCBI36]
Chr5:5q33.3-35.3
pathogenic
GRCh38/hg38 5q34-35.3(chr5:168689326-181269946)x3 copy number gain See cases [RCV000051866] Chr5:168689326..181269946 [GRCh38]
Chr5:168116331..180696947 [GRCh37]
Chr5:168048909..180629553 [NCBI36]
Chr5:5q34-35.3
pathogenic
GRCh38/hg38 5q35.1-35.2(chr5:172776798-174342969)x1 copy number loss See cases [RCV000052149] Chr5:172776798..174342969 [GRCh38]
Chr5:172203801..173769972 [GRCh37]
Chr5:172136407..173702578 [NCBI36]
Chr5:5q35.1-35.2
pathogenic
GRCh38/hg38 5q35.1-35.2(chr5:172961091-175054665)x1 copy number loss See cases [RCV000052150] Chr5:172961091..175054665 [GRCh38]
Chr5:172388094..174481668 [GRCh37]
Chr5:172320700..174414274 [NCBI36]
Chr5:5q35.1-35.2
pathogenic
NM_153607.2(CREBRF):c.1681+2784A>G single nucleotide variant Lung cancer [RCV000095573] Chr5:173115163 [GRCh38]
Chr5:172542166 [GRCh37]
Chr5:5q35.1
uncertain significance
GRCh38/hg38 5q33.3-35.3(chr5:156825512-181269805)x3 copy number gain See cases [RCV000133847] Chr5:156825512..181269805 [GRCh38]
Chr5:156252523..180696806 [GRCh37]
Chr5:156185101..180629412 [NCBI36]
Chr5:5q33.3-35.3
pathogenic
GRCh38/hg38 5q34-35.3(chr5:164386701-181269805)x3 copy number gain See cases [RCV000135546] Chr5:164386701..181269805 [GRCh38]
Chr5:163813707..180696806 [GRCh37]
Chr5:163746285..180629412 [NCBI36]
Chr5:5q34-35.3
pathogenic
GRCh38/hg38 5q35.1-35.3(chr5:169334755-181285301)x3 copy number gain See cases [RCV000141249] Chr5:169334755..181285301 [GRCh38]
Chr5:168761759..180712302 [GRCh37]
Chr5:168694337..180644908 [NCBI36]
Chr5:5q35.1-35.3
pathogenic
GRCh37/hg19 5q15-35.3(chr5:94844077-178830410)x3 copy number gain not provided [RCV000487658] Chr5:94844077..178830410 [GRCh37]
Chr5:5q15-35.3
likely benign
GRCh37/hg19 5q34-35.1(chr5:164207156-172799124)x1 copy number loss See cases [RCV000447112] Chr5:164207156..172799124 [GRCh37]
Chr5:5q34-35.1
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789) copy number gain See cases [RCV000510723] Chr5:113577..180719789 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
GRCh37/hg19 5q21.3-35.3(chr5:106716357-180687338)x3 copy number gain See cases [RCV000448245] Chr5:106716357..180687338 [GRCh37]
Chr5:5q21.3-35.3
pathogenic
GRCh37/hg19 5q35.1-35.3(chr5:171396359-180719789)x3 copy number gain See cases [RCV000448458] Chr5:171396359..180719789 [GRCh37]
Chr5:5q35.1-35.3
pathogenic
GRCh37/hg19 5q35.1-35.3(chr5:172031248-180719789)x3 copy number gain See cases [RCV000512068] Chr5:172031248..180719789 [GRCh37]
Chr5:5q35.1-35.3
pathogenic
GRCh37/hg19 5p15.1-q35.2(chr5:17628741-176575720)x1 copy number loss See cases [RCV000511978] Chr5:17628741..176575720 [GRCh37]
Chr5:5p15.1-q35.2
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789)x3 copy number gain See cases [RCV000512039] Chr5:113577..180719789 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:13648-180905029)x3 copy number gain not provided [RCV000744317] Chr5:13648..180905029 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:25328-180693344)x3 copy number gain not provided [RCV000744323] Chr5:25328..180693344 [GRCh37]
Chr5:5p15.33-q35.3
pathogenic
GRCh37/hg19 5q33.2-35.3(chr5:155344802-180693344)x3 copy number gain not provided [RCV000745284] Chr5:155344802..180693344 [GRCh37]
Chr5:5q33.2-35.3
pathogenic
GRCh37/hg19 5q34-35.2(chr5:166421173-173324843)x1 copy number loss Atrial septal defect 7 with or without atrioventricular conduction defects [RCV000853560] Chr5:166421173..173324843 [GRCh37]
Chr5:5q34-35.2
pathogenic
NM_153607.3(CREBRF):c.930A>G (p.Ser310=) single nucleotide variant not provided [RCV000965697] Chr5:173091109 [GRCh38]
Chr5:172518112 [GRCh37]
Chr5:5q35.1
benign
NM_153607.3(CREBRF):c.471C>T (p.Pro157=) single nucleotide variant not provided [RCV000956354] Chr5:173090650 [GRCh38]
Chr5:172517653 [GRCh37]
Chr5:5q35.1
benign
GRCh37/hg19 5q35.1-35.3(chr5:170805664-180719789)x3 copy number gain 5q35 microduplication syndrome [RCV001263227] Chr5:170805664..180719789 [GRCh37]
Chr5:5q35.1-35.3
pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:24050 AgrOrtholog
COSMIC CREBRF COSMIC
Ensembl Genes ENSG00000164463 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000296953 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000428290 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000430801 UniProtKB/TrEMBL
  ENSP00000431107 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000296953 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000520420 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000522692 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000523161 UniProtKB/TrEMBL
GTEx ENSG00000164463 GTEx
HGNC ID HGNC:24050 ENTREZGENE
Human Proteome Map CREBRF Human Proteome Map
InterPro bZIP UniProtKB/Swiss-Prot
  CREBRF UniProtKB/Swiss-Prot
KEGG Report hsa:153222 UniProtKB/Swiss-Prot
NCBI Gene 153222 ENTREZGENE
OMIM 617109 OMIM
PANTHER PTHR21552 UniProtKB/Swiss-Prot
PharmGKB PA162380187 PharmGKB
PROSITE BZIP_BASIC UniProtKB/Swiss-Prot
UniProt CRERF_HUMAN UniProtKB/Swiss-Prot
  E5RI19_HUMAN UniProtKB/TrEMBL
  Q8IUR6 ENTREZGENE
UniProt Secondary B3DFH2 UniProtKB/Swiss-Prot
  B3KW49 UniProtKB/Swiss-Prot
  D3DQM2 UniProtKB/Swiss-Prot
  F5GXN3 UniProtKB/Swiss-Prot
  Q5HYG4 UniProtKB/Swiss-Prot
  Q5HYK0 UniProtKB/Swiss-Prot
  Q86YR3 UniProtKB/Swiss-Prot
  Q8IZG1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-03-13 CREBRF  CREB3 regulatory factor  C5orf41  chromosome 5 open reading frame 41  Symbol and/or name change 5135510 APPROVED