PAN3 (poly(A) specific ribonuclease subunit PAN3) - Rat Genome Database

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Gene: PAN3 (poly(A) specific ribonuclease subunit PAN3) Homo sapiens
Analyze
Symbol: PAN3
Name: poly(A) specific ribonuclease subunit PAN3
RGD ID: 1603874
HGNC Page HGNC:29991
Description: Contributes to poly(A)-specific ribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within deadenylation-dependent decapping of nuclear-transcribed mRNA; positive regulation of cytoplasmic mRNA processing body assembly; and protein targeting. Part of PAN complex.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hPan3; PAB-dependent poly(A)-specific ribonuclease subunit 3; PAB-dependent poly(A)-specific ribonuclease subunit PAN3; PAB1P-dependent poly(A)-nuclease; PAB1P-dependent poly(A)-specific ribonuclease; PABP-dependent poly(A) nuclease 3; PABP1-dependent poly A-specific ribonuclease subunit PAN3; PAN deadenylation complex subunit 3; PAN2-PAN3 deadenylation complex subunit PAN3; PAN3 poly(A) specific ribonuclease subunit; PAN3 poly(A) specific ribonuclease subunit homolog; poly(A)-nuclease deadenylation complex subunit 3
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381328,138,193 - 28,295,335 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1328,138,506 - 28,295,335 (+)EnsemblGRCh38hg38GRCh38
GRCh371328,712,682 - 28,869,472 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361327,646,417 - 27,767,472 (+)NCBINCBI36Build 36hg18NCBI36
Celera139,787,744 - 9,944,258 (+)NCBICelera
Cytogenetic Map13q12.2NCBI
HuRef139,533,856 - 9,690,407 (+)NCBIHuRef
CHM1_11328,681,211 - 28,837,730 (+)NCBICHM1_1
T2T-CHM13v2.01327,361,098 - 27,517,568 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (TAS)
nucleus  (IEA)
P-body  (IBA,IEA)
PAN complex  (IBA,IDA,IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. RNA decay machines: deadenylation by the Ccr4-not and Pan2-Pan3 complexes. Wahle E and Winkler GS, Biochim Biophys Acta. 2013 Jun-Jul;1829(6-7):561-70. doi: 10.1016/j.bbagrm.2013.01.003. Epub 2013 Jan 19.
Additional References at PubMed
PMID:12477932   PMID:12975309   PMID:14583602   PMID:14702039   PMID:15057823   PMID:15489334   PMID:17595167   PMID:17785442   PMID:18029348   PMID:18056425   PMID:19322201   PMID:19615732  
PMID:20309963   PMID:21873635   PMID:21981923   PMID:21984184   PMID:23340509   PMID:23398456   PMID:24880343   PMID:25086665   PMID:25446091   PMID:26344197   PMID:26673895   PMID:26760575  
PMID:27173435   PMID:28514442   PMID:28559491   PMID:28611215   PMID:28718761   PMID:29395067   PMID:30209976   PMID:31104843   PMID:31401408   PMID:31586073   PMID:32807901   PMID:33961781  
PMID:34079125   PMID:34244482   PMID:34597346   PMID:35140242   PMID:35271311   PMID:35509820   PMID:35973513   PMID:36931259   PMID:37827155  


Genomics

Comparative Map Data
PAN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381328,138,193 - 28,295,335 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1328,138,506 - 28,295,335 (+)EnsemblGRCh38hg38GRCh38
GRCh371328,712,682 - 28,869,472 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361327,646,417 - 27,767,472 (+)NCBINCBI36Build 36hg18NCBI36
Celera139,787,744 - 9,944,258 (+)NCBICelera
Cytogenetic Map13q12.2NCBI
HuRef139,533,856 - 9,690,407 (+)NCBIHuRef
CHM1_11328,681,211 - 28,837,730 (+)NCBICHM1_1
T2T-CHM13v2.01327,361,098 - 27,517,568 (+)NCBIT2T-CHM13v2.0
Pan3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395147,363,018 - 147,485,310 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5147,366,971 - 147,485,312 (+)EnsemblGRCm39 Ensembl
GRCm385147,426,208 - 147,548,501 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5147,430,161 - 147,548,502 (+)EnsemblGRCm38mm10GRCm38
MGSCv375148,242,156 - 148,360,077 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365147,741,238 - 147,858,845 (+)NCBIMGSCv36mm8
Celera5145,424,005 - 145,541,898 (+)NCBICelera
Cytogenetic Map5G3NCBI
cM Map586.93NCBI
Pan3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,512,835 - 12,637,066 (-)NCBIGRCr8
mRatBN7.2127,476,707 - 7,595,384 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl127,476,697 - 7,599,204 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0129,214,116 - 9,331,901 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl129,216,536 - 9,331,195 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01211,333,266 - 11,449,831 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4128,046,162 - 8,165,081 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera129,218,136 - 9,336,110 (-)NCBICelera
Cytogenetic Map12p11NCBI
Pan3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554977,500,748 - 7,647,255 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554977,500,478 - 7,646,541 (+)NCBIChiLan1.0ChiLan1.0
PAN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21427,723,636 - 27,886,390 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11318,827,987 - 18,990,992 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0139,420,405 - 9,579,859 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11327,797,325 - 27,921,266 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1327,798,607 - 27,921,266 (+)Ensemblpanpan1.1panPan2
PAN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12511,416,321 - 11,550,830 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2511,417,657 - 11,550,810 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2511,479,225 - 11,613,731 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02511,544,373 - 11,678,148 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2511,545,635 - 11,678,130 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12511,440,197 - 11,574,226 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02511,432,789 - 11,566,165 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02511,474,666 - 11,609,590 (-)NCBIUU_Cfam_GSD_1.0
Pan3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945172,518,051 - 172,654,798 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647223,297,847 - 23,431,982 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647223,297,679 - 23,434,107 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl115,487,138 - 5,614,452 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1115,487,019 - 5,614,458 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2115,173,907 - 5,301,062 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.137,249,596 - 7,405,770 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl37,249,298 - 7,405,910 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605736,983,767 - 37,141,534 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pan3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477610,227,308 - 10,364,522 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477610,224,772 - 10,364,816 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PAN3
34 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 13q12.11-34(chr13:18946182-114304628)x3 copy number gain See cases [RCV000053726] Chr13:18946182..114304628 [GRCh38]
Chr13:19520322..115070103 [GRCh37]
Chr13:18418322..114088205 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q12.11-12.3(chr13:18958091-31090460)x3 copy number gain See cases [RCV000053729] Chr13:18958091..31090460 [GRCh38]
Chr13:19532231..31664597 [GRCh37]
Chr13:18430231..30562597 [NCBI36]
Chr13:13q12.11-12.3
pathogenic
GRCh38/hg38 13q12.11-34(chr13:19837395-114327173)x3 copy number gain See cases [RCV000053731] Chr13:19837395..114327173 [GRCh38]
Chr13:20411535..115085141 [GRCh37]
Chr13:19309535..114110750 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q11-34(chr13:18565048-114327173)x3 copy number gain See cases [RCV000053719] Chr13:18565048..114327173 [GRCh38]
Chr13:19139188..115085141 [GRCh37]
Chr13:18037188..114110750 [NCBI36]
Chr13:13q11-34
pathogenic
GRCh38/hg38 13q11-13.3(chr13:18676442-37656039)x3 copy number gain See cases [RCV000053721] Chr13:18676442..37656039 [GRCh38]
Chr13:19250582..38230176 [GRCh37]
Chr13:18148582..37128176 [NCBI36]
Chr13:13q11-13.3
pathogenic
GRCh38/hg38 13q11-34(chr13:18850545-114327173)x3 copy number gain See cases [RCV000053723] Chr13:18850545..114327173 [GRCh38]
Chr13:19296527..115085141 [GRCh37]
Chr13:18194527..114110750 [NCBI36]
Chr13:13q11-34
pathogenic
NM_175854.7(PAN3):c.852+11141G>A single nucleotide variant Lung cancer [RCV000097816] Chr13:28208487 [GRCh38]
Chr13:28782624 [GRCh37]
Chr13:13q12.2
uncertain significance
GRCh37/hg19 13q12.2-12.3(chr13:28669064-31367407)x1 copy number loss 13q12.2q12.3 deletion [RCV001579311] Chr13:28669064..31367407 [GRCh37]
Chr13:13q12.2-12.3
likely pathogenic
GRCh38/hg38 13q12.11-34(chr13:19833130-114298614)x3 copy number gain See cases [RCV000134104] Chr13:19833130..114298614 [GRCh38]
Chr13:20407270..115064089 [GRCh37]
Chr13:19305270..114082191 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q12.13-12.3(chr13:26965244-30097858)x3 copy number gain See cases [RCV000135283] Chr13:26965244..30097858 [GRCh38]
Chr13:27539381..30671995 [GRCh37]
Chr13:26437381..29569995 [NCBI36]
Chr13:13q12.13-12.3
likely pathogenic
GRCh38/hg38 13q11-34(chr13:18445862-114327173)x1 copy number loss See cases [RCV000135610] Chr13:18445862..114327173 [GRCh38]
Chr13:19020001..115085141 [GRCh37]
Chr13:10098739..114110750 [NCBI36]
Chr13:13q11-34
pathogenic
GRCh38/hg38 13q12.11-14.11(chr13:19671934-40914767)x3 copy number gain See cases [RCV000137892] Chr13:19671934..40914767 [GRCh38]
Chr13:20246074..41488903 [GRCh37]
Chr13:19144074..40386903 [NCBI36]
Chr13:13q12.11-14.11
pathogenic
GRCh38/hg38 13q12.11-34(chr13:19833130-114327106)x3 copy number gain See cases [RCV000139078] Chr13:19833130..114327106 [GRCh38]
Chr13:20407270..115085141 [GRCh37]
Chr13:19305270..114110683 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q11-34(chr13:18456040-114340285)x3 copy number gain See cases [RCV000140004] Chr13:18456040..114340285 [GRCh38]
Chr13:19030180..115105760 [GRCh37]
Chr13:17928180..114123862 [NCBI36]
Chr13:13q11-34
pathogenic
GRCh38/hg38 13q11-13.2(chr13:18862146-33577351)x3 copy number gain See cases [RCV000141867] Chr13:18862146..33577351 [GRCh38]
Chr13:19436286..34151488 [GRCh37]
Chr13:18334286..33049488 [NCBI36]
Chr13:13q11-13.2
pathogenic
GRCh38/hg38 13q12.11-34(chr13:19671934-114340331)x3 copy number gain See cases [RCV000142924] Chr13:19671934..114340331 [GRCh38]
Chr13:20246074..115085141 [GRCh37]
Chr13:19144074..114123908 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh38/hg38 13q11-34(chr13:18862146-114342258)x3 copy number gain See cases [RCV000143462] Chr13:18862146..114342258 [GRCh38]
Chr13:19436286..115107733 [GRCh37]
Chr13:18334286..114125835 [NCBI36]
Chr13:13q11-34
pathogenic
GRCh38/hg38 13q12.11-34(chr13:19837395-114327173)x3 copy number gain See cases [RCV000148126] Chr13:19837395..114327173 [GRCh38]
Chr13:20411535..115085141 [GRCh37]
Chr13:19309535..114110750 [NCBI36]
Chr13:13q12.11-34
pathogenic
GRCh37/hg19 13q12.11-34(chr13:19571503-115092569)x3 copy number gain See cases [RCV000240150] Chr13:19571503..115092569 [GRCh37]
Chr13:13q12.11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19053605-115108528)x3 copy number gain See cases [RCV001353184] Chr13:19053605..115108528 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q12.2(chr13:28708506-28841233)x3 copy number gain not provided [RCV000585048] Chr13:28708506..28841233 [GRCh37]
Chr13:13q12.2
likely benign
GRCh37/hg19 13q12.11-34(chr13:19571503-115092510) copy number gain See cases [RCV000449142] Chr13:19571503..115092510 [GRCh37]
Chr13:13q12.11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733)x3 copy number gain See cases [RCV000445886] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436287-115107733) copy number gain See cases [RCV000510405] Chr13:19436287..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436287-115107733)x3 copy number gain See cases [RCV000511880] Chr13:19436287..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
NM_175854.8(PAN3):c.1510A>G (p.Thr504Ala) single nucleotide variant Inborn genetic diseases [RCV003272207] Chr13:28266813 [GRCh38]
Chr13:28840950 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.1460C>T (p.Pro487Leu) single nucleotide variant Inborn genetic diseases [RCV003276479] Chr13:28266763 [GRCh38]
Chr13:28840900 [GRCh37]
Chr13:13q12.2
uncertain significance
GRCh37/hg19 13q12.12-13.2(chr13:24080918-34361992)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626443] Chr13:24080918..34361992 [GRCh37]
Chr13:13q12.12-13.2
drug response
GRCh37/hg19 13q12.2-12.3(chr13:28152002-29117192)x3 copy number gain See cases [RCV000512521] Chr13:28152002..29117192 [GRCh37]
Chr13:13q12.2-12.3
uncertain significance
GRCh37/hg19 13q11-22.1(chr13:19436286-74045459)x3 copy number gain not provided [RCV000683572] Chr13:19436286..74045459 [GRCh37]
Chr13:13q11-22.1
pathogenic
GRCh37/hg19 13q11-34(chr13:19058717-115103529)x3 copy number gain not provided [RCV000738115] Chr13:19058717..115103529 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19031237-115107157)x3 copy number gain not provided [RCV000750643] Chr13:19031237..115107157 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733)x3 copy number gain not provided [RCV000849129] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
NM_175854.8(PAN3):c.385G>A (p.Gly129Ser) single nucleotide variant Inborn genetic diseases [RCV003290909] Chr13:28139042 [GRCh38]
Chr13:28713179 [GRCh37]
Chr13:13q12.2
uncertain significance
GRCh37/hg19 13q12.12-12.3(chr13:23775339-30534624)x3 copy number gain not provided [RCV001258538] Chr13:23775339..30534624 [GRCh37]
Chr13:13q12.12-12.3
likely pathogenic
GRCh37/hg19 13p13-q34(chr13:1-115169878)x3 copy number gain See cases [RCV001780076] Chr13:1..115169878 [GRCh37]
Chr13:13p13-q34
pathogenic
NM_175854.8(PAN3):c.2608C>T (p.Arg870Cys) single nucleotide variant Inborn genetic diseases [RCV003252442] Chr13:28292466 [GRCh38]
Chr13:28866603 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.85del (p.Ala29fs) deletion not specified [RCV001775486] Chr13:28138741 [GRCh38]
Chr13:28712878 [GRCh37]
Chr13:13q12.2
uncertain significance
GRCh37/hg19 13p13-q34(chr13:1-115169878) copy number gain Complete trisomy 13 syndrome [RCV002280659] Chr13:1..115169878 [GRCh37]
Chr13:13p13-q34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733)x3 copy number gain not provided [RCV001834436] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-114981726) copy number gain not specified [RCV002053035] Chr13:19436286..114981726 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19436286-115107733) copy number gain not specified [RCV002053036] Chr13:19436286..115107733 [GRCh37]
Chr13:13q11-34
pathogenic
GRCh37/hg19 13q11-34(chr13:19253848-115108937)x3 copy number gain not provided [RCV002291540] Chr13:19253848..115108937 [GRCh37]
Chr13:13q11-34
pathogenic
NM_175854.8(PAN3):c.1807C>G (p.Pro603Ala) single nucleotide variant Inborn genetic diseases [RCV003307156] Chr13:28270715 [GRCh38]
Chr13:28844852 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.278C>G (p.Ala93Gly) single nucleotide variant Inborn genetic diseases [RCV002682126] Chr13:28138935 [GRCh38]
Chr13:28713072 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.2297T>C (p.Val766Ala) single nucleotide variant Inborn genetic diseases [RCV002732234] Chr13:28280519 [GRCh38]
Chr13:28854656 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.839A>G (p.Glu280Gly) single nucleotide variant Inborn genetic diseases [RCV002818899] Chr13:28197333 [GRCh38]
Chr13:28771470 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.2217G>A (p.Met739Ile) single nucleotide variant Inborn genetic diseases [RCV002688763] Chr13:28280439 [GRCh38]
Chr13:28854576 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.1788G>C (p.Lys596Asn) single nucleotide variant Inborn genetic diseases [RCV002906198] Chr13:28267397 [GRCh38]
Chr13:28841534 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.1187A>G (p.Glu396Gly) single nucleotide variant Inborn genetic diseases [RCV002845475] Chr13:28256478 [GRCh38]
Chr13:28830615 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.1144C>G (p.Pro382Ala) single nucleotide variant Inborn genetic diseases [RCV002924868] Chr13:28256435 [GRCh38]
Chr13:28830572 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.521G>A (p.Ser174Asn) single nucleotide variant Inborn genetic diseases [RCV002784247] Chr13:28174362 [GRCh38]
Chr13:28748499 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.2272G>A (p.Asp758Asn) single nucleotide variant Inborn genetic diseases [RCV002788649] Chr13:28280494 [GRCh38]
Chr13:28854631 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.308T>G (p.Val103Gly) single nucleotide variant Inborn genetic diseases [RCV002742089] Chr13:28138965 [GRCh38]
Chr13:28713102 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.829A>G (p.Arg277Gly) single nucleotide variant Inborn genetic diseases [RCV002825865] Chr13:28197323 [GRCh38]
Chr13:28771460 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.1793G>C (p.Gly598Ala) single nucleotide variant Inborn genetic diseases [RCV002986644] Chr13:28270701 [GRCh38]
Chr13:28844838 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.1258A>G (p.Asn420Asp) single nucleotide variant Inborn genetic diseases [RCV002878689] Chr13:28260456 [GRCh38]
Chr13:28834593 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.490A>G (p.Thr164Ala) single nucleotide variant Inborn genetic diseases [RCV002717988] Chr13:28174331 [GRCh38]
Chr13:28748468 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.1760A>C (p.Asn587Thr) single nucleotide variant Inborn genetic diseases [RCV003219364] Chr13:28267369 [GRCh38]
Chr13:28841506 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.41C>T (p.Ala14Val) single nucleotide variant Inborn genetic diseases [RCV003204100] Chr13:28138698 [GRCh38]
Chr13:28712835 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.788G>C (p.Arg263Thr) single nucleotide variant Inborn genetic diseases [RCV003199497] Chr13:28197282 [GRCh38]
Chr13:28771419 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.1121G>C (p.Ser374Thr) single nucleotide variant Inborn genetic diseases [RCV003212521] Chr13:28256412 [GRCh38]
Chr13:28830549 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.1942A>G (p.Ile648Val) single nucleotide variant Inborn genetic diseases [RCV003190446] Chr13:28270850 [GRCh38]
Chr13:28844987 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.1478G>A (p.Arg493Gln) single nucleotide variant Inborn genetic diseases [RCV003305355] Chr13:28266781 [GRCh38]
Chr13:28840918 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.1788G>T (p.Lys596Asn) single nucleotide variant Inborn genetic diseases [RCV003284909] Chr13:28267397 [GRCh38]
Chr13:28841534 [GRCh37]
Chr13:13q12.2
uncertain significance
NM_175854.8(PAN3):c.575C>T (p.Ser192Phe) single nucleotide variant Inborn genetic diseases [RCV003369424] Chr13:28176515 [GRCh38]
Chr13:28750652 [GRCh37]
Chr13:13q12.2
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2654
Count of miRNA genes:869
Interacting mature miRNAs:1032
Transcripts:ENST00000282391, ENST00000380958, ENST00000399613, ENST00000483842, ENST00000503791
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH45240  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,784,474 - 28,784,666UniSTSGRCh37
Build 361327,682,474 - 27,682,666RGDNCBI36
Celera139,859,576 - 9,859,768RGD
Cytogenetic Map13q12.2UniSTS
HuRef139,605,884 - 9,606,076UniSTS
GeneMap99-GB4 RH Map1385.36UniSTS
NCBI RH Map13205.9UniSTS
A009V42  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,843,964 - 28,844,090UniSTSGRCh37
Build 361327,741,964 - 27,742,090RGDNCBI36
Celera139,918,742 - 9,918,868RGD
Cytogenetic Map13q12.2UniSTS
HuRef139,664,888 - 9,665,014UniSTS
GeneMap99-GB4 RH Map1385.89UniSTS
RH15685  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,869,185 - 28,869,343UniSTSGRCh37
Build 361327,767,185 - 27,767,343RGDNCBI36
Celera139,943,968 - 9,944,126RGD
Cytogenetic Map13q12.2UniSTS
HuRef139,690,117 - 9,690,275UniSTS
GeneMap99-GB4 RH Map1385.16UniSTS
RH44945  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,805,483 - 28,805,591UniSTSGRCh37
Build 361327,703,483 - 27,703,591RGDNCBI36
Celera139,880,585 - 9,880,693RGD
Cytogenetic Map13q12.2UniSTS
HuRef139,626,894 - 9,627,002UniSTS
GeneMap99-GB4 RH Map1385.36UniSTS
RH66714  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,783,512 - 28,783,703UniSTSGRCh37
Build 361327,681,512 - 27,681,703RGDNCBI36
Celera139,858,614 - 9,858,805RGD
Cytogenetic Map13q12.2UniSTS
HuRef139,604,922 - 9,605,113UniSTS
GeneMap99-GB4 RH Map1384.74UniSTS
NCBI RH Map13205.9UniSTS
RH93771  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,848,216 - 28,848,340UniSTSGRCh37
Build 361327,746,216 - 27,746,340RGDNCBI36
Celera139,922,994 - 9,923,118RGD
Cytogenetic Map13q12.2UniSTS
HuRef139,669,139 - 9,669,263UniSTS
GeneMap99-GB4 RH Map1385.16UniSTS
SHGC-82992  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,799,358 - 28,799,676UniSTSGRCh37
Build 361327,697,358 - 27,697,676RGDNCBI36
Celera139,874,460 - 9,874,778RGD
Cytogenetic Map13q12.2UniSTS
HuRef139,620,765 - 9,621,083UniSTS
TNG Radiation Hybrid Map135130.0UniSTS
SHGC-84900  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,796,614 - 28,796,849UniSTSGRCh37
Build 361327,694,614 - 27,694,849RGDNCBI36
Celera139,871,718 - 9,871,953RGD
Cytogenetic Map13q12.2UniSTS
HuRef139,618,023 - 9,618,258UniSTS
TNG Radiation Hybrid Map135130.0UniSTS
D13S996  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,740,527 - 28,740,692UniSTSGRCh37
Build 361327,638,527 - 27,638,692RGDNCBI36
Celera139,815,629 - 9,815,794RGD
Cytogenetic Map13q12.2UniSTS
HuRef139,561,757 - 9,561,922UniSTS
D13S1215E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,869,051 - 28,869,210UniSTSGRCh37
Build 361327,767,051 - 27,767,210RGDNCBI36
Celera139,943,834 - 9,943,993RGD
Cytogenetic Map13q12.2UniSTS
HuRef139,689,983 - 9,690,142UniSTS
A009U34  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,784,486 - 28,784,597UniSTSGRCh37
Build 361327,682,486 - 27,682,597RGDNCBI36
Celera139,859,588 - 9,859,699RGD
Cytogenetic Map13q12.2UniSTS
HuRef139,605,896 - 9,606,007UniSTS
GeneMap99-GB4 RH Map1385.16UniSTS
A006U27  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,869,279 - 28,869,446UniSTSGRCh37
Build 361327,767,279 - 27,767,446RGDNCBI36
Celera139,944,062 - 9,944,229RGD
Cytogenetic Map13q12.2UniSTS
HuRef139,690,211 - 9,690,378UniSTS
GeneMap99-GB4 RH Map1385.16UniSTS
NCBI RH Map13205.9UniSTS
SHGC-9475  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,793,210 - 28,793,388UniSTSGRCh37
Build 361327,691,210 - 27,691,388RGDNCBI36
Celera139,868,314 - 9,868,492RGD
Cytogenetic Map13q12.2UniSTS
HuRef139,614,618 - 9,614,796UniSTS
Stanford-G3 RH Map13259.0UniSTS
RH45261  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,843,852 - 28,844,101UniSTSGRCh37
Build 361327,741,852 - 27,742,101RGDNCBI36
Celera139,918,630 - 9,918,879RGD
Cytogenetic Map13q12.2UniSTS
HuRef139,664,776 - 9,665,025UniSTS
GeneMap99-GB4 RH Map1385.36UniSTS
SGC34512  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,869,310 - 28,869,443UniSTSGRCh37
Build 361327,767,310 - 27,767,443RGDNCBI36
Celera139,944,093 - 9,944,226RGD
Cytogenetic Map13q12.2UniSTS
HuRef139,690,242 - 9,690,375UniSTS
GeneMap99-GB4 RH Map1384.74UniSTS
Whitehead-RH Map1362.2UniSTS
NCBI RH Map13205.9UniSTS
SHGC-4662  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,763,908 - 28,764,068UniSTSGRCh37
Build 361327,661,908 - 27,662,068RGDNCBI36
Celera139,839,010 - 9,839,170RGD
Cytogenetic Map13q12.2UniSTS
HuRef139,585,127 - 9,585,287UniSTS
Stanford-G3 RH Map13254.0UniSTS
RH45108  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,752,970 - 28,753,069UniSTSGRCh37
Build 361327,650,970 - 27,651,069RGDNCBI36
Celera139,828,072 - 9,828,171RGD
Cytogenetic Map13q12.2UniSTS
HuRef139,574,189 - 9,574,288UniSTS
GeneMap99-GB4 RH Map1385.47UniSTS
G31458  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,806,446 - 28,806,566UniSTSGRCh37
Build 361327,704,446 - 27,704,566RGDNCBI36
Celera139,881,548 - 9,881,668RGD
Cytogenetic Map13q12.2UniSTS
HuRef139,627,857 - 9,627,977UniSTS
PAN3  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,869,048 - 28,869,206UniSTSGRCh37
Celera139,943,831 - 9,943,989UniSTS
G32852  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,784,486 - 28,784,597UniSTSGRCh37
Celera139,859,588 - 9,859,699UniSTS
Cytogenetic Map13q12.2UniSTS
HuRef139,605,896 - 9,606,007UniSTS
G32893  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371328,843,964 - 28,844,090UniSTSGRCh37
Celera139,918,742 - 9,918,868UniSTS
Cytogenetic Map13q12.2UniSTS
HuRef139,664,888 - 9,665,014UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2343 1785 1306 280 1560 127 3568 968 1759 290 1418 1576 166 1188 2006 4
Low 93 1200 417 343 391 338 788 1227 1954 128 36 35 5 16 782 1
Below cutoff 1 3 2 1 1 18 1 5 2 4 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_175854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005266332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005266333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005266334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011535032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011535033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011535034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047430249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047430250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047430251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047430252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047430253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054374411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008488751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_941549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB107584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB109552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK091307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL138712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL356915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY358261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC128179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC128180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE671612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF088216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000380958   ⟹   ENSP00000370345
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1328,138,545 - 28,295,335 (+)Ensembl
RefSeq Acc Id: ENST00000399613   ⟹   ENSP00000382522
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1328,139,033 - 28,295,335 (+)Ensembl
RefSeq Acc Id: ENST00000483842
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1328,239,557 - 28,256,539 (+)Ensembl
RefSeq Acc Id: ENST00000503791
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1328,138,506 - 28,272,313 (+)Ensembl
RefSeq Acc Id: NM_175854   ⟹   NP_787050
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381328,138,545 - 28,295,335 (+)NCBI
GRCh371328,710,997 - 28,869,475 (+)NCBI
Build 361327,646,417 - 27,767,472 (+)NCBI Archive
Celera139,787,744 - 9,944,258 (+)RGD
HuRef139,533,856 - 9,690,407 (+)ENTREZGENE
CHM1_11328,681,211 - 28,837,730 (+)NCBI
T2T-CHM13v2.01327,361,098 - 27,517,568 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005266332   ⟹   XP_005266389
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381328,138,545 - 28,295,335 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005266333   ⟹   XP_005266390
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381328,138,545 - 28,295,335 (+)NCBI
GRCh371328,710,997 - 28,869,475 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011535032   ⟹   XP_011533334
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381328,138,545 - 28,295,335 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011535033   ⟹   XP_011533335
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381328,138,545 - 28,280,492 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011535034   ⟹   XP_011533336
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381328,138,193 - 28,295,335 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017020528   ⟹   XP_016876017
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381328,138,545 - 28,277,380 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017020530   ⟹   XP_016876019
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381328,138,545 - 28,277,380 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047430249   ⟹   XP_047286205
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381328,138,545 - 28,295,335 (+)NCBI
RefSeq Acc Id: XM_047430250   ⟹   XP_047286206
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381328,138,545 - 28,295,335 (+)NCBI
RefSeq Acc Id: XM_047430251   ⟹   XP_047286207
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381328,177,895 - 28,295,335 (+)NCBI
RefSeq Acc Id: XM_047430252   ⟹   XP_047286208
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381328,220,277 - 28,295,335 (+)NCBI
RefSeq Acc Id: XM_047430253   ⟹   XP_047286209
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381328,176,541 - 28,295,335 (+)NCBI
RefSeq Acc Id: XM_054374401   ⟹   XP_054230376
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01327,361,098 - 27,517,568 (+)NCBI
RefSeq Acc Id: XM_054374402   ⟹   XP_054230377
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01327,361,098 - 27,517,568 (+)NCBI
RefSeq Acc Id: XM_054374403   ⟹   XP_054230378
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01327,361,098 - 27,517,568 (+)NCBI
RefSeq Acc Id: XM_054374404   ⟹   XP_054230379
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01327,361,098 - 27,517,568 (+)NCBI
RefSeq Acc Id: XM_054374405   ⟹   XP_054230380
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01327,361,098 - 27,502,720 (+)NCBI
RefSeq Acc Id: XM_054374406   ⟹   XP_054230381
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01327,361,098 - 27,517,568 (+)NCBI
RefSeq Acc Id: XM_054374407   ⟹   XP_054230382
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01327,361,098 - 27,499,558 (+)NCBI
RefSeq Acc Id: XM_054374408   ⟹   XP_054230383
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01327,400,438 - 27,517,568 (+)NCBI
RefSeq Acc Id: XM_054374409   ⟹   XP_054230384
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01327,361,098 - 27,499,551 (+)NCBI
RefSeq Acc Id: XM_054374410   ⟹   XP_054230385
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01327,442,822 - 27,517,568 (+)NCBI
RefSeq Acc Id: XM_054374411   ⟹   XP_054230386
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01327,399,084 - 27,517,568 (+)NCBI
RefSeq Acc Id: XR_008488751
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01327,361,098 - 27,499,553 (+)NCBI
RefSeq Acc Id: XR_941549
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381328,138,545 - 28,277,380 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_787050 (Get FASTA)   NCBI Sequence Viewer  
  XP_005266389 (Get FASTA)   NCBI Sequence Viewer  
  XP_005266390 (Get FASTA)   NCBI Sequence Viewer  
  XP_011533334 (Get FASTA)   NCBI Sequence Viewer  
  XP_011533335 (Get FASTA)   NCBI Sequence Viewer  
  XP_011533336 (Get FASTA)   NCBI Sequence Viewer  
  XP_016876017 (Get FASTA)   NCBI Sequence Viewer  
  XP_016876019 (Get FASTA)   NCBI Sequence Viewer  
  XP_047286205 (Get FASTA)   NCBI Sequence Viewer  
  XP_047286206 (Get FASTA)   NCBI Sequence Viewer  
  XP_047286207 (Get FASTA)   NCBI Sequence Viewer  
  XP_047286208 (Get FASTA)   NCBI Sequence Viewer  
  XP_047286209 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230376 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230377 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230378 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230379 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230380 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230381 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230382 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230383 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230384 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230385 (Get FASTA)   NCBI Sequence Viewer  
  XP_054230386 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH24318 (Get FASTA)   NCBI Sequence Viewer  
  AAI28180 (Get FASTA)   NCBI Sequence Viewer  
  AAI28181 (Get FASTA)   NCBI Sequence Viewer  
  AAQ88628 (Get FASTA)   NCBI Sequence Viewer  
  ABK41888 (Get FASTA)   NCBI Sequence Viewer  
  BAC03632 (Get FASTA)   NCBI Sequence Viewer  
  BAD02262 (Get FASTA)   NCBI Sequence Viewer  
  BAD18690 (Get FASTA)   NCBI Sequence Viewer  
  BAD93184 (Get FASTA)   NCBI Sequence Viewer  
  BAH12353 (Get FASTA)   NCBI Sequence Viewer  
  CAI45987 (Get FASTA)   NCBI Sequence Viewer  
  EAX08430 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000370345
  ENSP00000370345.3
  ENSP00000382522
  ENSP00000382522.1
GenBank Protein Q58A45 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_787050   ⟸   NM_175854
- UniProtKB: Q76E13 (UniProtKB/Swiss-Prot),   Q5TBA0 (UniProtKB/Swiss-Prot),   Q5T516 (UniProtKB/Swiss-Prot),   Q5T515 (UniProtKB/Swiss-Prot),   Q5HYG6 (UniProtKB/Swiss-Prot),   Q0D2P2 (UniProtKB/Swiss-Prot),   B7Z3W7 (UniProtKB/Swiss-Prot),   B1ALF1 (UniProtKB/Swiss-Prot),   A1A4Y9 (UniProtKB/Swiss-Prot),   A1A4Y8 (UniProtKB/Swiss-Prot),   A0N0X1 (UniProtKB/Swiss-Prot),   Q8NBA6 (UniProtKB/Swiss-Prot),   Q58A45 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005266389   ⟸   XM_005266332
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005266390   ⟸   XM_005266333
- Peptide Label: isoform X2
- UniProtKB: A0A0C4DFZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011533336   ⟸   XM_011535034
- Peptide Label: isoform X12
- UniProtKB: A0A0C4DFZ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011533335   ⟸   XM_011535033
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011533334   ⟸   XM_011535032
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_016876019   ⟸   XM_017020530
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_016876017   ⟸   XM_017020528
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: ENSP00000382522   ⟸   ENST00000399613
RefSeq Acc Id: ENSP00000370345   ⟸   ENST00000380958
RefSeq Acc Id: XP_047286206   ⟸   XM_047430250
- Peptide Label: isoform X6
- UniProtKB: A0A0C4DFZ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047286205   ⟸   XM_047430249
- Peptide Label: isoform X3
- UniProtKB: A0A0C4DFZ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047286209   ⟸   XM_047430253
- Peptide Label: isoform X11
- UniProtKB: Q6ZMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047286207   ⟸   XM_047430251
- Peptide Label: isoform X8
- UniProtKB: A0A0C4DFZ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047286208   ⟸   XM_047430252
- Peptide Label: isoform X10
- UniProtKB: Q6ZMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054230379   ⟸   XM_054374404
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054230376   ⟸   XM_054374401
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054230377   ⟸   XM_054374402
- Peptide Label: isoform X2
- UniProtKB: A0A0C4DFZ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054230381   ⟸   XM_054374406
- Peptide Label: isoform X6
- UniProtKB: A0A0C4DFZ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054230378   ⟸   XM_054374403
- Peptide Label: isoform X3
- UniProtKB: A0A0C4DFZ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054230380   ⟸   XM_054374405
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054230382   ⟸   XM_054374407
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054230384   ⟸   XM_054374409
- Peptide Label: isoform X9
RefSeq Acc Id: XP_054230386   ⟸   XM_054374411
- Peptide Label: isoform X11
- UniProtKB: Q6ZMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054230383   ⟸   XM_054374408
- Peptide Label: isoform X8
- UniProtKB: A0A0C4DFZ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054230385   ⟸   XM_054374410
- Peptide Label: isoform X10
- UniProtKB: Q6ZMN5 (UniProtKB/TrEMBL)
Protein Domains
Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q58A45-F1-model_v2 AlphaFold Q58A45 1-887 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:29991 AgrOrtholog
COSMIC PAN3 COSMIC
Ensembl Genes ENSG00000152520 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000380958 ENTREZGENE
  ENST00000380958.8 UniProtKB/Swiss-Prot
  ENST00000399613 ENTREZGENE
  ENST00000399613.1 UniProtKB/TrEMBL
  ENST00000503791 ENTREZGENE
Gene3D-CATH 1.10.287.3700 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.5.5160 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000152520 GTEx
HGNC ID HGNC:29991 ENTREZGENE
Human Proteome Map PAN3 Human Proteome Map
InterPro Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pan3_PK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/Swiss-Prot
  Znf_CCCH_sf UniProtKB/Swiss-Prot
KEGG Report hsa:255967 UniProtKB/Swiss-Prot
NCBI Gene 255967 ENTREZGENE
OMIM 617448 OMIM
PANTHER PAN2-PAN3 DEADENYLATION COMPLEX SUBUNIT PAN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12272 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pan3_PK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA144596398 PharmGKB
PROSITE PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_C3H1 UniProtKB/Swiss-Prot
SMART ZnF_C3H1 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF90229 UniProtKB/Swiss-Prot
UniProt A0A0C4DFZ9 ENTREZGENE, UniProtKB/TrEMBL
  A0N0X1 ENTREZGENE
  A1A4Y8 ENTREZGENE
  A1A4Y9 ENTREZGENE
  B1ALF1 ENTREZGENE
  B7Z3W7 ENTREZGENE
  PAN3_HUMAN UniProtKB/Swiss-Prot
  Q0D2P2 ENTREZGENE
  Q58A45 ENTREZGENE
  Q5HYG6 ENTREZGENE
  Q5T515 ENTREZGENE
  Q5T516 ENTREZGENE
  Q5TBA0 ENTREZGENE
  Q6ZMN5 ENTREZGENE, UniProtKB/TrEMBL
  Q76E13 ENTREZGENE
  Q8NBA6 ENTREZGENE
UniProt Secondary A0N0X1 UniProtKB/Swiss-Prot
  A1A4Y8 UniProtKB/Swiss-Prot
  A1A4Y9 UniProtKB/Swiss-Prot
  B1ALF1 UniProtKB/Swiss-Prot
  B7Z3W7 UniProtKB/Swiss-Prot
  Q0D2P2 UniProtKB/Swiss-Prot
  Q5HYG6 UniProtKB/Swiss-Prot
  Q5T515 UniProtKB/Swiss-Prot
  Q5T516 UniProtKB/Swiss-Prot
  Q5TBA0 UniProtKB/Swiss-Prot
  Q76E13 UniProtKB/Swiss-Prot
  Q8NBA6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 PAN3  poly(A) specific ribonuclease subunit PAN3    PAN3 poly(A) specific ribonuclease subunit  Symbol and/or name change 5135510 APPROVED
2014-04-09 PAN3  PAN3 poly(A) specific ribonuclease subunit    PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED