KRT18P32 (keratin 18 pseudogene 32) - Rat Genome Database

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Gene: KRT18P32 (keratin 18 pseudogene 32) Homo sapiens
Analyze
Symbol: KRT18P32
Name: keratin 18 pseudogene 32
RGD ID: 1603817
HGNC Page HGNC:33401
Description: INTERACTS WITH cylindrospermopsin; lipopolysaccharide; S-(1,2-dichlorovinyl)-L-cysteine
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: FLJ33910
Related Functional Gene: KRT18  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381238,491,305 - 238,492,701 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1238,491,358 - 238,492,644 (+)EnsemblGRCh38hg38GRCh38
GRCh371238,654,605 - 238,656,001 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361236,721,206 - 236,722,630 (+)NCBINCBI36Build 36hg18NCBI36
Celera1211,908,489 - 211,909,885 (+)NCBICelera
Cytogenetic Map1q43NCBI
HuRef1209,111,800 - 209,113,196 (+)NCBIHuRef
CHM1_11239,927,392 - 239,928,788 (+)NCBICHM1_1
T2T-CHM13v2.01237,902,757 - 237,904,153 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22310353  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:454
Count of miRNA genes:353
Interacting mature miRNAs:386
Transcripts:ENST00000399684, ENST00000424695, ENST00000439811
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 10 1 3 31 2
Below cutoff 89 100 87 40 64 27 177 59 125 56 399 109 13 46 113

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000424695
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1238,491,358 - 238,492,644 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC KRT18P32 COSMIC
Ensembl Genes ENSG00000215149 Ensembl, ENTREZGENE
GTEx ENSG00000215149 GTEx
HGNC ID HGNC:33401 ENTREZGENE
Human Proteome Map KRT18P32 Human Proteome Map
NCBI Gene 391179 ENTREZGENE