STAG3L4 (STAG3 cohesin complex component like 4 (pseudogene)) - Rat Genome Database

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Gene: STAG3L4 (STAG3 cohesin complex component like 4 (pseudogene)) Homo sapiens
Analyze
No known orthologs.
Symbol: STAG3L4
Name: STAG3 cohesin complex component like 4 (pseudogene)
RGD ID: 1603611
HGNC Page HGNC:33887
Description: Predicted to enable chromatin binding activity. Predicted to be involved in sister chromatid cohesion. Predicted to be located in nucleus. Predicted to be part of chromatin and cohesin complex.
Type: pseudo (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: FLJ13195; STAG3-like protein 4; STAG3L4P; stromal antigen 3-like 4 (pseudogene); stromal antigen 3-like protein 4
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: STAG3  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38767,302,638 - 67,321,526 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl767,302,621 - 67,362,950 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl767,305,987 - 67,309,715 (+)EnsemblGRCh38hg38GRCh38
GRCh37766,767,625 - 66,786,513 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36766,405,051 - 66,423,948 (+)NCBINCBI36Build 36hg18NCBI36
Celera760,149,255 - 60,168,156 (+)NCBICelera
Cytogenetic Map7q11.21NCBI
HuRef762,950,464 - 62,969,346 (+)NCBIHuRef
CHM1_1766,862,668 - 66,881,562 (+)NCBICHM1_1
T2T-CHM13v2.0768,522,374 - 68,541,301 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2766,105,187 - 66,124,075 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10698974   PMID:12477932   PMID:14702039   PMID:17207965   PMID:21873635   PMID:22898364   PMID:23599027   PMID:32393512   PMID:33961781  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:622
Count of miRNA genes:314
Interacting mature miRNAs:329
Transcripts:ENST00000352103, ENST00000416602, ENST00000472361
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH67806  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37588,214,837 - 88,214,957UniSTSGRCh37
GRCh37766,785,197 - 66,785,317UniSTSGRCh37
Build 36588,250,593 - 88,250,713RGDNCBI36
Celera584,111,073 - 84,111,193RGD
Celera760,166,840 - 60,166,960UniSTS
Cytogenetic Map7p11.2-q11.2UniSTS
HuRef762,968,030 - 62,968,150UniSTS
HuRef583,419,100 - 83,419,220UniSTS
CRA_TCAGchr7v2766,122,759 - 66,122,879UniSTS
SHGC-30972  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37766,767,645 - 66,767,772UniSTSGRCh37
Build 36766,405,080 - 66,405,207RGDNCBI36
Celera760,149,284 - 60,149,411RGD
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map7p11.2-q11.2UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map7q11.22UniSTS
HuRef762,950,484 - 62,950,611UniSTS
CRA_TCAGchr7v2766,105,207 - 66,105,334UniSTS
GeneMap99-G3 RH Map72903.0UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENST00000352103
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl767,305,987 - 67,309,715 (+)Ensembl
RefSeq Acc Id: ENST00000416602
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl767,302,621 - 67,321,526 (+)Ensembl
RefSeq Acc Id: ENST00000430244
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl767,335,976 - 67,340,024 (+)Ensembl
RefSeq Acc Id: ENST00000472361
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl767,302,659 - 67,309,715 (+)Ensembl
RefSeq Acc Id: ENST00000647855
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl767,302,659 - 67,362,950 (+)Ensembl
RefSeq Acc Id: ENST00000687534
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl767,302,653 - 67,320,405 (+)Ensembl
RefSeq Acc Id: ENST00000689067
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl767,302,653 - 67,330,891 (+)Ensembl
RefSeq Acc Id: ENST00000689458
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl767,302,658 - 67,320,401 (+)Ensembl
RefSeq Acc Id: ENST00000689978
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl767,302,655 - 67,336,735 (+)Ensembl
RefSeq Acc Id: ENST00000691248
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl767,302,654 - 67,321,325 (+)Ensembl
RefSeq Acc Id: NR_040585
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38767,302,638 - 67,321,526 (+)NCBI
GRCh37766,767,625 - 66,786,513 (+)NCBI
HuRef762,950,464 - 62,969,346 (+)NCBI
CHM1_1766,862,668 - 66,881,562 (+)NCBI
T2T-CHM13v2.0768,522,374 - 68,541,301 (+)NCBI
Sequence:
RefSeq Acc Id: NR_040586
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38767,302,638 - 67,321,526 (+)NCBI
GRCh37766,767,625 - 66,786,513 (+)NCBI
HuRef762,950,464 - 62,969,346 (+)NCBI
CHM1_1766,862,668 - 66,881,562 (+)NCBI
T2T-CHM13v2.0768,522,374 - 68,541,301 (+)NCBI
CRA_TCAGchr7v2766,105,187 - 66,124,075 (+)NCBI
Sequence:
Reference Protein Sequences

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8TBR4-F1-model_v2 AlphaFold Q8TBR4 1-150 view protein structure

Promoters
RGD ID:6806234
Promoter ID:HG_KWN:57849
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid
Transcripts:OTTHUMT00000346611,   OTTHUMT00000346613,   OTTHUMT00000346614,   OTTHUMT00000346615,   OTTHUMT00000346616,   OTTHUMT00000346617,   UC010LAJ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36766,404,904 - 66,405,404 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:33887 AgrOrtholog
COSMIC STAG3L4 COSMIC
Ensembl Genes ENSG00000106610 Ensembl
  ENSG00000291153 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000416602 ENTREZGENE
GTEx ENSG00000106610 GTEx
  ENSG00000291153 GTEx
HGNC ID HGNC:33887 ENTREZGENE
Human Proteome Map STAG3L4 Human Proteome Map
InterPro Cohesin_Scc3/SA UniProtKB/Swiss-Prot
  STAG UniProtKB/Swiss-Prot
NCBI Gene 64940 ENTREZGENE
PANTHER COHESIN SUBUNIT SA-3 UniProtKB/Swiss-Prot
  PTHR11199 UniProtKB/Swiss-Prot
Pfam STAG UniProtKB/Swiss-Prot
PharmGKB PA162404933 PharmGKB
UniProt Q8TBR4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q9H8W0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-24 STAG3L4  STAG3 cohesin complex component like 4 (pseudogene)  STAG3L4  stromal antigen 3-like 4 (pseudogene)  Symbol and/or name change 19259463 PROVISIONAL
2013-07-02 STAG3L4  stromal antigen 3-like 4 (pseudogene)    stromal antigen 3-like 4  Symbol and/or name change 5135510 APPROVED