OSCAR (osteoclast associated Ig-like receptor) - Rat Genome Database

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Gene: OSCAR (osteoclast associated Ig-like receptor) Homo sapiens
Analyze
Symbol: OSCAR
Name: osteoclast associated Ig-like receptor
RGD ID: 1603587
HGNC Page HGNC:29960
Description: Enables collagen receptor activity. Acts upstream of or within osteoclast differentiation. Located in extracellular exosome.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: hOSCAR; MGC33613; osteoclast associated receptor OSCAR-S1; osteoclast associated receptor OSCAR-S2; osteoclast associated, immunoglobulin-like receptor; osteoclast-associated immunoglobulin-like receptor; osteoclast-associated receptor; PIgR-3; PIGR3; poly-Ig receptor 3; polymeric immunoglobulin receptor 3
RGD Orthologs
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381954,094,668 - 54,100,803 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1954,094,668 - 54,102,692 (-)EnsemblGRCh38hg38GRCh38
GRCh371954,597,933 - 54,604,094 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,289,745 - 59,295,960 (-)NCBINCBI36Build 36hg18NCBI36
Celera1951,637,613 - 51,643,830 (-)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1950,913,817 - 50,920,134 (-)NCBIHuRef
CHM1_11954,599,687 - 54,605,876 (-)NCBICHM1_1
T2T-CHM13v2.01957,173,230 - 57,179,492 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Telmisartan Prevents Alveolar Bone Loss by Decreasing the Expression of Osteoclasts Markers in Hypertensive Rats With Periodontal Disease. Brito VGB, etal., Front Pharmacol. 2020 Nov 11;11:579926. doi: 10.3389/fphar.2020.579926. eCollection 2020.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1185147   PMID:11805147   PMID:12477932   PMID:14702039   PMID:15085135   PMID:15155468   PMID:15650060   PMID:15905516   PMID:16007331   PMID:16109714   PMID:16493074   PMID:18821671  
PMID:19453261   PMID:20237496   PMID:21172874   PMID:21841309   PMID:21873635   PMID:22009730   PMID:22949349   PMID:22985931   PMID:23006423   PMID:23146195   PMID:23376485   PMID:23533145  
PMID:24448348   PMID:25716998   PMID:26552697   PMID:26786702   PMID:28555364   PMID:32246488   PMID:32859940   PMID:33660365   PMID:33961781   PMID:34048709   PMID:34373451  


Genomics

Comparative Map Data
OSCAR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381954,094,668 - 54,100,803 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1954,094,668 - 54,102,692 (-)EnsemblGRCh38hg38GRCh38
GRCh371954,597,933 - 54,604,094 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,289,745 - 59,295,960 (-)NCBINCBI36Build 36hg18NCBI36
Celera1951,637,613 - 51,643,830 (-)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1950,913,817 - 50,920,134 (-)NCBIHuRef
CHM1_11954,599,687 - 54,605,876 (-)NCBICHM1_1
T2T-CHM13v2.01957,173,230 - 57,179,492 (-)NCBIT2T-CHM13v2.0
Oscar
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3973,612,812 - 3,619,156 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl73,612,812 - 3,619,156 (-)EnsemblGRCm39 Ensembl
GRCm3873,609,813 - 3,616,157 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl73,609,813 - 3,616,157 (-)EnsemblGRCm38mm10GRCm38
MGSCv3773,561,415 - 3,567,735 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3673,212,900 - 3,219,220 (-)NCBIMGSCv36mm8
Celera73,520,876 - 3,527,938 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.08NCBI
Oscar
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,521,626 - 74,529,119 (+)NCBIGRCr8
mRatBN7.2165,607,214 - 65,615,395 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,607,410 - 65,613,758 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx171,055,647 - 71,061,883 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0179,478,623 - 79,484,859 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0172,805,613 - 72,811,842 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0164,182,174 - 64,188,658 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,182,422 - 64,188,658 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,173,549 - 63,180,129 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4163,920,506 - 63,925,535 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera163,331,535 - 63,337,783 (+)NCBICelera
Cytogenetic Map1q12NCBI
OSCAR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22060,099,494 - 60,105,451 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11962,021,240 - 62,028,314 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01951,027,449 - 51,033,972 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11959,870,810 - 59,873,139 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1959,871,394 - 59,876,370 (-)Ensemblpanpan1.1panPan2
OSCAR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11103,101,462 - 103,113,593 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1103,101,819 - 103,106,974 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1103,162,912 - 103,168,962 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,746,274 - 103,752,320 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1103,747,000 - 103,752,155 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11103,384,153 - 103,396,647 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,145,559 - 103,158,053 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,859,686 - 103,865,735 (+)NCBIUU_Cfam_GSD_1.0
Oscar
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,705,658 - 2,711,508 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936994226,424 - 312,143 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936994226,318 - 232,143 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OSCAR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl656,022,256 - 56,030,646 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1656,021,434 - 56,029,398 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,187,447 - 53,195,643 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OSCAR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1646,772,335 - 46,777,606 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607326,859,779 - 26,866,516 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in OSCAR
21 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 19q13.33-13.43(chr19:50191219-58535818)x3 copy number gain See cases [RCV000050883] Chr19:50191219..58535818 [GRCh38]
Chr19:50694476..59047185 [GRCh37]
Chr19:55386288..63738997 [NCBI36]
Chr19:19q13.33-13.43
pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:49907832-58557889)x3 copy number gain See cases [RCV000052925] Chr19:49907832..58557889 [GRCh38]
Chr19:50411089..59069256 [GRCh37]
Chr19:55102901..63761068 [NCBI36]
Chr19:19q13.33-13.43
pathogenic
GRCh38/hg38 19q13.41-13.43(chr19:51141518-58539965)x3 copy number gain See cases [RCV000052926] Chr19:51141518..58539965 [GRCh38]
Chr19:51644775..59051332 [GRCh37]
Chr19:56336587..63743144 [NCBI36]
Chr19:19q13.41-13.43
pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:47908540-58539965)x3 copy number gain See cases [RCV000052914] Chr19:47908540..58539965 [GRCh38]
Chr19:48411797..59051332 [GRCh37]
Chr19:53103609..63743144 [NCBI36]
Chr19:19q13.33-13.43
pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:47929575-58572206)x3 copy number gain See cases [RCV000052915] Chr19:47929575..58572206 [GRCh38]
Chr19:48432832..59083573 [GRCh37]
Chr19:53124644..63775385 [NCBI36]
Chr19:19q13.33-13.43
pathogenic
GRCh38/hg38 19q13.41-13.43(chr19:52612432-58581203)x3 copy number gain See cases [RCV000134174] Chr19:52612432..58581203 [GRCh38]
Chr19:53115685..59092570 [GRCh37]
Chr19:57807497..63784382 [NCBI36]
Chr19:19q13.41-13.43
pathogenic
GRCh38/hg38 19q13.41-13.43(chr19:52955056-58581203)x3 copy number gain See cases [RCV000134139] Chr19:52955056..58581203 [GRCh38]
Chr19:53458309..59092570 [GRCh37]
Chr19:58150121..63784382 [NCBI36]
Chr19:19q13.41-13.43
pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:50152520-58581203)x3 copy number gain See cases [RCV000135843] Chr19:50152520..58581203 [GRCh38]
Chr19:50655777..59092570 [GRCh37]
Chr19:55347589..63784382 [NCBI36]
Chr19:19q13.33-13.43
pathogenic
GRCh38/hg38 19q13.41-13.43(chr19:52143873-58445521)x3 copy number gain See cases [RCV000142008] Chr19:52143873..58445521 [GRCh38]
Chr19:52647126..58956888 [GRCh37]
Chr19:57338938..63648700 [NCBI36]
Chr19:19q13.41-13.43
pathogenic
GRCh37/hg19 19q13.42(chr19:54280799-54635178)x1 copy number loss See cases [RCV000240343] Chr19:54280799..54635178 [GRCh37]
Chr19:19q13.42
pathogenic
GRCh37/hg19 19q13.33-13.43(chr19:50489390-59095359)x3 copy number gain See cases [RCV000445925] Chr19:50489390..59095359 [GRCh37]
Chr19:19q13.33-13.43
pathogenic
GRCh37/hg19 19q13.42-13.43(chr19:54344821-58956888)x3 copy number gain See cases [RCV000448186] Chr19:54344821..58956888 [GRCh37]
Chr19:19q13.42-13.43
pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888)x3 copy number gain See cases [RCV000511289] Chr19:260912..58956888 [GRCh37]
Chr19:19p13.3-q13.43
pathogenic|uncertain significance
NM_133169.6(OSCAR):c.144C>G (p.Asn48Lys) single nucleotide variant Inborn genetic diseases [RCV003287509] Chr19:54097091 [GRCh38]
Chr19:54600378 [GRCh37]
Chr19:19q13.42
uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888) copy number gain See cases [RCV000512296] Chr19:260912..58956888 [GRCh37]
Chr19:19p13.3-q13.43
pathogenic
GRCh37/hg19 19q13.42(chr19:53867570-55833460)x3 copy number gain not provided [RCV000684091] Chr19:53867570..55833460 [GRCh37]
Chr19:19q13.42
uncertain significance
GRCh37/hg19 19q13.42-13.43(chr19:54196216-58759679)x3 copy number gain not provided [RCV000684095] Chr19:54196216..58759679 [GRCh37]
Chr19:19q13.42-13.43
pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:68029-59110290)x3 copy number gain not provided [RCV000752439] Chr19:68029..59110290 [GRCh37]
Chr19:19p13.3-q13.43
pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:260912-59097160)x3 copy number gain not provided [RCV000752444] Chr19:260912..59097160 [GRCh37]
Chr19:19p13.3-q13.43
pathogenic
GRCh37/hg19 19q13.33-13.43(chr19:50740074-59097160)x3 copy number gain not provided [RCV000740208] Chr19:50740074..59097160 [GRCh37]
Chr19:19q13.33-13.43
pathogenic
GRCh37/hg19 19q13.42(chr19:54474844-55181741)x3 copy number gain not provided [RCV001007058] Chr19:54474844..55181741 [GRCh37]
Chr19:19q13.42
uncertain significance
GRCh37/hg19 19q13.32-13.42(chr19:47939842-54626871) copy number gain not provided [RCV001249294] Chr19:47939842..54626871 [GRCh37]
Chr19:19q13.32-13.42
not provided
GRCh37/hg19 19q13.42-13.43(chr19:54334195-56434037)x3 copy number gain not provided [RCV001259948] Chr19:54334195..56434037 [GRCh37]
Chr19:19q13.42-13.43
uncertain significance
GRCh37/hg19 19q13.33-13.43(chr19:48463931-57095254)x3 copy number gain not provided [RCV001259944] Chr19:48463931..57095254 [GRCh37]
Chr19:19q13.33-13.43
pathogenic
NC_000019.9:g.(?_54297303)_(55678016_?)dup duplication not provided [RCV001981426] Chr19:54297303..55678016 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_133169.6(OSCAR):c.655+109C>T single nucleotide variant Inborn genetic diseases [RCV002968790] Chr19:54095763 [GRCh38]
Chr19:54599028 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_133169.6(OSCAR):c.211G>T (p.Ala71Ser) single nucleotide variant Inborn genetic diseases [RCV002729509] Chr19:54097024 [GRCh38]
Chr19:54600311 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_133169.6(OSCAR):c.477C>G (p.Phe159Leu) single nucleotide variant Inborn genetic diseases [RCV002977729] Chr19:54096050 [GRCh38]
Chr19:54599315 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_133169.6(OSCAR):c.171A>T (p.Gln57His) single nucleotide variant Inborn genetic diseases [RCV002821247] Chr19:54097064 [GRCh38]
Chr19:54600351 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_133169.6(OSCAR):c.440G>A (p.Ser147Asn) single nucleotide variant Inborn genetic diseases [RCV002951206] Chr19:54096087 [GRCh38]
Chr19:54599352 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_133169.6(OSCAR):c.482T>A (p.Leu161Gln) single nucleotide variant Inborn genetic diseases [RCV002737412] Chr19:54096045 [GRCh38]
Chr19:54599310 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_133169.6(OSCAR):c.458G>A (p.Arg153His) single nucleotide variant Inborn genetic diseases [RCV002798854] Chr19:54096069 [GRCh38]
Chr19:54599334 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_133169.6(OSCAR):c.308G>T (p.Arg103Leu) single nucleotide variant Inborn genetic diseases [RCV002916709] Chr19:54096927 [GRCh38]
Chr19:54600214 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_133169.6(OSCAR):c.445C>A (p.Arg149Ser) single nucleotide variant Inborn genetic diseases [RCV002666014] Chr19:54096082 [GRCh38]
Chr19:54599347 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_133169.6(OSCAR):c.218T>C (p.Leu73Pro) single nucleotide variant Inborn genetic diseases [RCV002893796] Chr19:54097017 [GRCh38]
Chr19:54600304 [GRCh37]
Chr19:19q13.42
likely benign
NM_133169.6(OSCAR):c.436G>T (p.Val146Leu) single nucleotide variant Inborn genetic diseases [RCV002675334] Chr19:54096091 [GRCh38]
Chr19:54599356 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_133169.6(OSCAR):c.644T>C (p.Ile215Thr) single nucleotide variant Inborn genetic diseases [RCV002831398] Chr19:54095883 [GRCh38]
Chr19:54599148 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_133169.6(OSCAR):c.428G>A (p.Gly143Asp) single nucleotide variant Inborn genetic diseases [RCV002747941] Chr19:54096099 [GRCh38]
Chr19:54599364 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_133169.6(OSCAR):c.506C>T (p.Pro169Leu) single nucleotide variant Inborn genetic diseases [RCV002960820] Chr19:54096021 [GRCh38]
Chr19:54599286 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_133169.6(OSCAR):c.65C>T (p.Pro22Leu) single nucleotide variant Inborn genetic diseases [RCV002679694] Chr19:54099753 [GRCh38]
Chr19:54603044 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_133169.6(OSCAR):c.479T>C (p.Val160Ala) single nucleotide variant Inborn genetic diseases [RCV002677970] Chr19:54096048 [GRCh38]
Chr19:54599313 [GRCh37]
Chr19:19q13.42
likely benign
NM_133169.6(OSCAR):c.376G>A (p.Glu126Lys) single nucleotide variant Inborn genetic diseases [RCV003192292] Chr19:54096151 [GRCh38]
Chr19:54599416 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_133169.6(OSCAR):c.505C>T (p.Pro169Ser) single nucleotide variant Inborn genetic diseases [RCV003178967] Chr19:54096022 [GRCh38]
Chr19:54599287 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_133169.6(OSCAR):c.152T>G (p.Leu51Trp) single nucleotide variant Inborn genetic diseases [RCV003196598] Chr19:54097083 [GRCh38]
Chr19:54600370 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_133169.6(OSCAR):c.53C>T (p.Thr18Ile) single nucleotide variant Inborn genetic diseases [RCV003184295] Chr19:54099765 [GRCh38]
Chr19:54603056 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_133169.6(OSCAR):c.308G>A (p.Arg103Gln) single nucleotide variant Inborn genetic diseases [RCV003351012] Chr19:54096927 [GRCh38]
Chr19:54600214 [GRCh37]
Chr19:19q13.42
uncertain significance
GRCh37/hg19 19q13.33-13.43(chr19:49625130-57647352)x3 copy number gain not provided [RCV003485200] Chr19:49625130..57647352 [GRCh37]
Chr19:19q13.33-13.43
likely pathogenic
GRCh37/hg19 19q13.42(chr19:54544215-54881884)x3 copy number gain not provided [RCV003457291] Chr19:54544215..54881884 [GRCh37]
Chr19:19q13.42
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3272
Count of miRNA genes:601
Interacting mature miRNAs:661
Transcripts:ENST00000284648, ENST00000351806, ENST00000356532, ENST00000358375, ENST00000359649, ENST00000391760, ENST00000391761
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-111407  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,599,902 - 54,600,273UniSTSGRCh37
Build 361959,291,714 - 59,292,085RGDNCBI36
Celera1951,639,582 - 51,639,953RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,915,912 - 50,916,261UniSTS
TNG Radiation Hybrid Map1920520.0UniSTS
ECD02594  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,603,439 - 54,604,263UniSTSGRCh37
Build 361959,295,251 - 59,296,075RGDNCBI36
Celera1951,643,121 - 51,643,945RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,919,425 - 50,920,249UniSTS
ECD16891  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,600,110 - 54,600,531UniSTSGRCh37
Build 361959,291,922 - 59,292,343RGDNCBI36
Celera1951,639,790 - 51,640,211RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,916,098 - 50,916,519UniSTS
ECD17221  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,598,292 - 54,598,700UniSTSGRCh37
Build 361959,290,104 - 59,290,512RGDNCBI36
Celera1951,637,972 - 51,638,380RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,914,176 - 50,914,584UniSTS
ECD23441  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,599,135 - 54,599,324UniSTSGRCh37
Build 361959,290,947 - 59,291,136RGDNCBI36
Celera1951,638,815 - 51,639,004RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,915,019 - 50,915,208UniSTS
REN91503  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,597,563 - 54,597,787UniSTSGRCh37
Build 361959,289,375 - 59,289,599RGDNCBI36
Celera1951,637,243 - 51,637,467RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,913,447 - 50,913,671UniSTS
REN91504  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,597,764 - 54,598,007UniSTSGRCh37
Build 361959,289,576 - 59,289,819RGDNCBI36
Celera1951,637,444 - 51,637,687RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,913,648 - 50,913,891UniSTS
REN91505  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,597,979 - 54,598,244UniSTSGRCh37
Build 361959,289,791 - 59,290,056RGDNCBI36
Celera1951,637,659 - 51,637,924RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,913,863 - 50,914,128UniSTS
REN91506  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,598,243 - 54,598,467UniSTSGRCh37
Build 361959,290,055 - 59,290,279RGDNCBI36
Celera1951,637,923 - 51,638,147RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,914,127 - 50,914,351UniSTS
REN91507  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,598,444 - 54,598,687UniSTSGRCh37
Build 361959,290,256 - 59,290,499RGDNCBI36
Celera1951,638,124 - 51,638,367RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,914,328 - 50,914,571UniSTS
REN91508  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,598,678 - 54,598,902UniSTSGRCh37
Build 361959,290,490 - 59,290,714RGDNCBI36
Celera1951,638,358 - 51,638,582RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,914,562 - 50,914,786UniSTS
REN91509  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,598,798 - 54,599,048UniSTSGRCh37
Build 361959,290,610 - 59,290,860RGDNCBI36
Celera1951,638,478 - 51,638,728RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,914,682 - 50,914,932UniSTS
REN91510  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,598,926 - 54,599,152UniSTSGRCh37
Build 361959,290,738 - 59,290,964RGDNCBI36
Celera1951,638,606 - 51,638,832RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,914,810 - 50,915,036UniSTS
REN91511  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,599,194 - 54,599,441UniSTSGRCh37
Build 361959,291,006 - 59,291,253RGDNCBI36
Celera1951,638,874 - 51,639,121RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,915,078 - 50,915,325UniSTS
REN91512  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,599,303 - 54,599,527UniSTSGRCh37
Build 361959,291,115 - 59,291,339RGDNCBI36
Celera1951,638,983 - 51,639,207RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,915,187 - 50,915,411UniSTS
REN91513  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,599,470 - 54,599,833UniSTSGRCh37
GRCh371954,599,470 - 54,599,723UniSTSGRCh37
Build 361959,291,282 - 59,291,535RGDNCBI36
Celera1951,639,150 - 51,639,513UniSTS
Celera1951,639,150 - 51,639,403RGD
HuRef1950,915,354 - 50,915,733UniSTS
HuRef1950,915,354 - 50,915,607UniSTS
REN91514  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,599,936 - 54,600,163UniSTSGRCh37
Build 361959,291,748 - 59,291,975RGDNCBI36
Celera1951,639,616 - 51,639,843RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,915,946 - 50,916,151UniSTS
REN91515  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,600,154 - 54,600,412UniSTSGRCh37
Build 361959,291,966 - 59,292,224RGDNCBI36
Celera1951,639,834 - 51,640,092RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,916,142 - 50,916,400UniSTS
REN91516  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,600,383 - 54,600,626UniSTSGRCh37
Build 361959,292,195 - 59,292,438RGDNCBI36
Celera1951,640,063 - 51,640,306RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,916,371 - 50,916,614UniSTS
REN91517  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,600,613 - 54,600,854UniSTSGRCh37
Build 361959,292,425 - 59,292,666RGDNCBI36
Celera1951,640,293 - 51,640,534RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,916,601 - 50,916,842UniSTS
REN91518  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,600,828 - 54,601,090UniSTSGRCh37
Build 361959,292,640 - 59,292,902RGDNCBI36
Celera1951,640,508 - 51,640,772RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,916,816 - 50,917,080UniSTS
REN91519  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,601,077 - 54,601,310UniSTSGRCh37
Build 361959,292,889 - 59,293,122RGDNCBI36
Celera1951,640,759 - 51,640,992RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,917,067 - 50,917,300UniSTS
REN91520  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,601,309 - 54,601,572UniSTSGRCh37
Build 361959,293,121 - 59,293,384RGDNCBI36
Celera1951,640,991 - 51,641,254RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,917,299 - 50,917,562UniSTS
REN91521  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,601,548 - 54,601,783UniSTSGRCh37
Build 361959,293,360 - 59,293,595RGDNCBI36
Celera1951,641,230 - 51,641,465RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,917,538 - 50,917,773UniSTS
REN91522  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,601,754 - 54,601,999UniSTSGRCh37
Build 361959,293,566 - 59,293,811RGDNCBI36
Celera1951,641,436 - 51,641,681RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,917,744 - 50,917,989UniSTS
REN91523  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,601,909 - 54,602,137UniSTSGRCh37
Build 361959,293,721 - 59,293,949RGDNCBI36
Celera1951,641,591 - 51,641,819RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,917,899 - 50,918,127UniSTS
REN91524  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,602,623 - 54,602,867UniSTSGRCh37
Build 361959,294,435 - 59,294,679RGDNCBI36
Celera1951,642,305 - 51,642,549RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,918,609 - 50,918,853UniSTS
REN91525  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,602,851 - 54,603,100UniSTSGRCh37
Build 361959,294,663 - 59,294,912RGDNCBI36
Celera1951,642,533 - 51,642,782RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,918,837 - 50,919,086UniSTS
REN91526  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,602,890 - 54,603,139UniSTSGRCh37
Build 361959,294,702 - 59,294,951RGDNCBI36
Celera1951,642,572 - 51,642,821RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,918,876 - 50,919,125UniSTS
REN91527  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,603,412 - 54,603,644UniSTSGRCh37
Build 361959,295,224 - 59,295,456RGDNCBI36
Celera1951,643,094 - 51,643,326RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,919,398 - 50,919,630UniSTS
REN91528  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,603,636 - 54,603,883UniSTSGRCh37
Build 361959,295,448 - 59,295,695RGDNCBI36
Celera1951,643,318 - 51,643,565RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,919,622 - 50,919,869UniSTS
REN91529  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,603,860 - 54,604,111UniSTSGRCh37
Build 361959,295,672 - 59,295,923RGDNCBI36
Celera1951,643,542 - 51,643,793RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,919,846 - 50,920,097UniSTS
REN91530  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,604,085 - 54,604,333UniSTSGRCh37
Build 361959,295,897 - 59,296,145RGDNCBI36
Celera1951,643,767 - 51,644,015RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,920,071 - 50,920,319UniSTS
REN91531  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,604,303 - 54,604,541UniSTSGRCh37
Build 361959,296,115 - 59,296,353RGDNCBI36
Celera1951,643,985 - 51,644,227RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,920,289 - 50,920,531UniSTS
REN91532  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,604,509 - 54,604,775UniSTSGRCh37
Build 361959,296,321 - 59,296,587RGDNCBI36
Celera1951,644,195 - 51,644,457RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,920,499 - 50,920,781UniSTS
REN91533  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,604,727 - 54,604,965UniSTSGRCh37
GRCh371954,604,671 - 54,604,965UniSTSGRCh37
Build 361959,296,483 - 59,296,777RGDNCBI36
Celera1951,644,409 - 51,644,647UniSTS
Celera1951,644,353 - 51,644,647RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,920,677 - 50,920,972UniSTS
HuRef1950,920,733 - 50,920,972UniSTS
REN91534  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,604,938 - 54,605,204UniSTSGRCh37
Build 361959,296,750 - 59,297,016RGDNCBI36
Celera1951,644,620 - 51,644,885RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,920,945 - 50,921,210UniSTS
REN91535  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,605,458 - 54,605,693UniSTSGRCh37
Build 361959,297,270 - 59,297,505RGDNCBI36
Celera1951,645,139 - 51,645,373RGD
Cytogenetic Map19q13.42UniSTS
REN91536  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,605,678 - 54,605,917UniSTSGRCh37
Build 361959,297,490 - 59,297,729RGDNCBI36
Celera1951,645,358 - 51,645,597RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,921,542 - 50,921,781UniSTS
REN91537  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,605,887 - 54,606,143UniSTSGRCh37
GRCh371954,605,887 - 54,606,047UniSTSGRCh37
Build 361959,297,699 - 59,297,859RGDNCBI36
Celera1951,645,567 - 51,645,823UniSTS
Celera1951,645,567 - 51,645,727RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,921,751 - 50,921,911UniSTS
HuRef1950,921,751 - 50,922,007UniSTS
stSG605779  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,597,626 - 54,598,724UniSTSGRCh37
Build 361959,289,438 - 59,290,536RGDNCBI36
Celera1951,637,306 - 51,638,404RGD
HuRef1950,913,510 - 50,914,608UniSTS
stSG605784  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,602,911 - 54,604,109UniSTSGRCh37
Build 361959,294,723 - 59,295,921RGDNCBI36
Celera1951,642,593 - 51,643,791RGD
HuRef1950,918,897 - 50,920,095UniSTS
stSG605786  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,604,790 - 54,606,091UniSTSGRCh37
Build 361959,296,602 - 59,297,903RGDNCBI36
Celera1951,644,472 - 51,645,771RGD
HuRef1950,920,796 - 50,921,955UniSTS
D9S923  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,604,430 - 54,604,696UniSTSGRCh37
Build 361959,296,242 - 59,296,508RGDNCBI36
Celera1951,644,116 - 51,644,378RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,920,420 - 50,920,702UniSTS
D1S3693  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map3p22UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.32UniSTS
Cytogenetic Map10p15.3-p15.2UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map1q32.3-q41UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map17q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 21 855 24 14 1054 11 130 12 61 33 82 630 3 99 39
Low 2243 1901 1588 549 504 394 3511 1377 3143 302 1334 847 163 1 1104 2098 3 1
Below cutoff 168 230 112 58 299 58 695 801 524 81 37 119 7 1 648 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001282349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_130771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_206818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC012314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC245052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF251702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF391162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF391163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF391164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF474152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF474153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK091111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK130199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK311307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC035023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG722509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000284648   ⟹   ENSP00000365808
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,094,670 - 54,102,692 (-)Ensembl
RefSeq Acc Id: ENST00000351806   ⟹   ENSP00000304523
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,094,670 - 54,100,857 (-)Ensembl
RefSeq Acc Id: ENST00000356532   ⟹   ENSP00000348927
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,094,670 - 54,100,792 (-)Ensembl
RefSeq Acc Id: ENST00000358375   ⟹   ENSP00000351145
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,094,668 - 54,100,803 (-)Ensembl
RefSeq Acc Id: ENST00000359649   ⟹   ENSP00000352671
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,094,670 - 54,100,815 (-)Ensembl
RefSeq Acc Id: ENST00000391760   ⟹   ENSP00000375640
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,095,774 - 54,100,841 (-)Ensembl
RefSeq Acc Id: ENST00000391761   ⟹   ENSP00000375641
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,094,668 - 54,100,792 (-)Ensembl
RefSeq Acc Id: ENST00000611261   ⟹   ENSP00000479089
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,094,670 - 54,102,686 (-)Ensembl
RefSeq Acc Id: ENST00000616215   ⟹   ENSP00000479628
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,094,670 - 54,102,686 (-)Ensembl
RefSeq Acc Id: ENST00000616447   ⟹   ENSP00000483558
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,094,670 - 54,100,792 (-)Ensembl
RefSeq Acc Id: ENST00000617140   ⟹   ENSP00000484401
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,094,670 - 54,102,686 (-)Ensembl
RefSeq Acc Id: NM_001282349   ⟹   NP_001269278
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381954,094,668 - 54,100,803 (-)NCBI
HuRef1950,913,817 - 50,921,858 (-)NCBI
CHM1_11954,599,687 - 54,607,705 (-)NCBI
T2T-CHM13v2.01957,173,230 - 57,179,492 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001282350   ⟹   NP_001269279
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381954,094,668 - 54,100,803 (-)NCBI
HuRef1950,913,817 - 50,921,858 (-)NCBI
CHM1_11954,599,687 - 54,607,705 (-)NCBI
T2T-CHM13v2.01957,173,230 - 57,179,492 (-)NCBI
Sequence:
RefSeq Acc Id: NM_130771   ⟹   NP_570127
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381954,094,668 - 54,100,803 (-)NCBI
GRCh371954,597,933 - 54,604,159 (-)NCBI
Build 361959,289,745 - 59,295,960 (-)NCBI Archive
HuRef1950,913,817 - 50,921,858 (-)NCBI
CHM1_11954,599,687 - 54,607,705 (-)NCBI
T2T-CHM13v2.01957,173,230 - 57,179,492 (-)NCBI
Sequence:
RefSeq Acc Id: NM_133168   ⟹   NP_573398
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381954,094,668 - 54,100,803 (-)NCBI
GRCh371954,597,933 - 54,604,159 (-)NCBI
Build 361959,289,745 - 59,295,960 (-)NCBI Archive
HuRef1950,913,817 - 50,921,858 (-)NCBI
CHM1_11954,599,687 - 54,607,705 (-)NCBI
T2T-CHM13v2.01957,173,230 - 57,179,492 (-)NCBI
Sequence:
RefSeq Acc Id: NM_133169   ⟹   NP_573399
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381954,094,668 - 54,100,803 (-)NCBI
GRCh371954,597,933 - 54,604,159 (-)NCBI
Build 361959,289,745 - 59,295,960 (-)NCBI Archive
HuRef1950,913,817 - 50,921,858 (-)NCBI
CHM1_11954,599,687 - 54,607,705 (-)NCBI
T2T-CHM13v2.01957,173,230 - 57,179,492 (-)NCBI
Sequence:
RefSeq Acc Id: NM_206818   ⟹   NP_996554
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381954,094,668 - 54,100,803 (-)NCBI
GRCh371954,597,933 - 54,604,159 (-)NCBI
Build 361959,289,745 - 59,295,960 (-)NCBI Archive
HuRef1950,913,817 - 50,921,858 (-)NCBI
CHM1_11954,599,687 - 54,607,705 (-)NCBI
T2T-CHM13v2.01957,173,230 - 57,179,492 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001269278 (Get FASTA)   NCBI Sequence Viewer  
  NP_001269279 (Get FASTA)   NCBI Sequence Viewer  
  NP_570127 (Get FASTA)   NCBI Sequence Viewer  
  NP_573398 (Get FASTA)   NCBI Sequence Viewer  
  NP_573399 (Get FASTA)   NCBI Sequence Viewer  
  NP_996554 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH35023 (Get FASTA)   NCBI Sequence Viewer  
  AAL68495 (Get FASTA)   NCBI Sequence Viewer  
  AAL68496 (Get FASTA)   NCBI Sequence Viewer  
  AAL68497 (Get FASTA)   NCBI Sequence Viewer  
  AAM19095 (Get FASTA)   NCBI Sequence Viewer  
  AAQ05766 (Get FASTA)   NCBI Sequence Viewer  
  AAQ05767 (Get FASTA)   NCBI Sequence Viewer  
  BAC03586 (Get FASTA)   NCBI Sequence Viewer  
  EAW72174 (Get FASTA)   NCBI Sequence Viewer  
  EAW72175 (Get FASTA)   NCBI Sequence Viewer  
  EAW72176 (Get FASTA)   NCBI Sequence Viewer  
  EAW72177 (Get FASTA)   NCBI Sequence Viewer  
  EAW72178 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000304523
  ENSP00000304523.5
  ENSP00000348927
  ENSP00000348927.3
  ENSP00000351145
  ENSP00000351145.4
  ENSP00000352671
  ENSP00000352671.4
  ENSP00000365808
  ENSP00000365808.2
  ENSP00000375640.1
  ENSP00000375641
  ENSP00000375641.1
  ENSP00000477825.1
  ENSP00000477845.1
  ENSP00000477994.1
  ENSP00000478027.1
  ENSP00000478099.1
  ENSP00000478216.1
  ENSP00000478224.1
  ENSP00000478230.1
  ENSP00000478382.1
  ENSP00000478594.1
  ENSP00000479089.1
  ENSP00000479317.1
  ENSP00000479593.1
  ENSP00000479628.1
  ENSP00000479650.1
  ENSP00000479849.1
  ENSP00000479954.1
  ENSP00000480193.1
  ENSP00000480424.1
  ENSP00000480863.1
  ENSP00000480900.1
  ENSP00000481050.1
  ENSP00000481147.1
  ENSP00000481207.1
  ENSP00000481257.1
  ENSP00000481261.1
  ENSP00000481561.1
  ENSP00000481647.1
  ENSP00000481785.1
  ENSP00000481805.1
  ENSP00000481926.1
  ENSP00000482136.1
  ENSP00000482359.1
  ENSP00000482402.1
  ENSP00000482414.1
  ENSP00000482428.1
  ENSP00000482460.1
  ENSP00000482545.1
  ENSP00000482610.1
  ENSP00000482734.1
  ENSP00000482791.1
  ENSP00000482805.1
  ENSP00000482997.1
  ENSP00000483090.1
  ENSP00000483744.1
  ENSP00000484125.1
  ENSP00000484323.1
  ENSP00000484401.1
  ENSP00000484567.1
  ENSP00000484602.1
  ENSP00000484695.1
  ENSP00000484755.1
  ENSP00000484878.1
  ENSP00000484977.1
GenBank Protein Q8IYS5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_573398   ⟸   NM_133168
- Peptide Label: isoform 5 precursor
- UniProtKB: A0A0A0MR14 (UniProtKB/TrEMBL),   A0A0G2JMM7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_573399   ⟸   NM_133169
- Peptide Label: isoform 4 precursor
- UniProtKB: A0A0A0MRF2 (UniProtKB/TrEMBL),   A0A0G2JMM7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_570127   ⟸   NM_130771
- Peptide Label: isoform 3 precursor
- UniProtKB: A0A087X1R2 (UniProtKB/TrEMBL),   A0A0G2JMM7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_996554   ⟸   NM_206818
- Peptide Label: isoform 1 precursor
- UniProtKB: Q8WXQ2 (UniProtKB/Swiss-Prot),   Q8WXQ1 (UniProtKB/Swiss-Prot),   Q8WXQ0 (UniProtKB/Swiss-Prot),   Q8NHL4 (UniProtKB/Swiss-Prot),   Q8N763 (UniProtKB/Swiss-Prot),   Q5GRG5 (UniProtKB/Swiss-Prot),   B7WNS2 (UniProtKB/Swiss-Prot),   Q8IYS5 (UniProtKB/Swiss-Prot),   A0A087WV17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001269279   ⟸   NM_001282350
- Peptide Label: isoform 7 precursor
- UniProtKB: Q8WXQ2 (UniProtKB/Swiss-Prot),   Q8WXQ1 (UniProtKB/Swiss-Prot),   Q8WXQ0 (UniProtKB/Swiss-Prot),   Q8NHL4 (UniProtKB/Swiss-Prot),   Q8N763 (UniProtKB/Swiss-Prot),   Q5GRG5 (UniProtKB/Swiss-Prot),   B7WNS2 (UniProtKB/Swiss-Prot),   Q8IYS5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001269278   ⟸   NM_001282349
- Peptide Label: isoform 6 precursor
- UniProtKB: Q8WXQ2 (UniProtKB/Swiss-Prot),   Q8WXQ1 (UniProtKB/Swiss-Prot),   Q8WXQ0 (UniProtKB/Swiss-Prot),   Q8NHL4 (UniProtKB/Swiss-Prot),   Q8N763 (UniProtKB/Swiss-Prot),   Q5GRG5 (UniProtKB/Swiss-Prot),   B7WNS2 (UniProtKB/Swiss-Prot),   Q8IYS5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000352671   ⟸   ENST00000359649
RefSeq Acc Id: ENSP00000479089   ⟸   ENST00000611261
RefSeq Acc Id: ENSP00000365808   ⟸   ENST00000284648
RefSeq Acc Id: ENSP00000304523   ⟸   ENST00000351806
RefSeq Acc Id: ENSP00000375640   ⟸   ENST00000391760
RefSeq Acc Id: ENSP00000375641   ⟸   ENST00000391761
RefSeq Acc Id: ENSP00000483558   ⟸   ENST00000616447
RefSeq Acc Id: ENSP00000479628   ⟸   ENST00000616215
RefSeq Acc Id: ENSP00000484401   ⟸   ENST00000617140
RefSeq Acc Id: ENSP00000348927   ⟸   ENST00000356532
RefSeq Acc Id: ENSP00000351145   ⟸   ENST00000358375
Protein Domains
Ig-like   Immunoglobulin subtype

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8IYS5-F1-model_v2 AlphaFold Q8IYS5 1-282 view protein structure

Promoters
RGD ID:13205559
Promoter ID:EPDNEW_H26359
Type:initiation region
Name:OSCAR_1
Description:osteoclast associated, immunoglobulin-like receptor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H26360  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381954,100,803 - 54,100,863EPDNEW
RGD ID:13205557
Promoter ID:EPDNEW_H26360
Type:initiation region
Name:OSCAR_2
Description:osteoclast associated, immunoglobulin-like receptor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H26359  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381954,102,676 - 54,102,736EPDNEW
RGD ID:6814651
Promoter ID:HG_XEF:4253
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:NM_001184973,   NM_175632
Position:
Human AssemblyChrPosition (strand)Source
Build 361959,291,806 - 59,292,306 (-)MPROMDB
RGD ID:6795875
Promoter ID:HG_KWN:30903
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:NB4
Transcripts:ENST00000391760,   UC002QCY.1,   UC002QCZ.1,   UC002QDA.1,   UC002QDB.1,   UC002QDC.1,   UC010ERC.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361959,295,651 - 59,296,151 (-)MPROMDB
RGD ID:6795846
Promoter ID:HG_KWN:30904
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000391762,   ENST00000391763,   ENST00000391764,   OTTHUMT00000139509,   OTTHUMT00000140176,   OTTHUMT00000140197,   OTTHUMT00000141178,   OTTHUMT00000141295,   OTTHUMT00000141296,   OTTHUMT00000318710,   UC002QDD.1,   UC002QDF.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361959,297,724 - 59,298,224 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:29960 AgrOrtholog
COSMIC OSCAR COSMIC
Ensembl Genes ENSG00000170909 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000273511 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000274703 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000275551 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000275644 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000275736 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000276982 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000277088 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000278378 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000278533 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000284648 ENTREZGENE
  ENST00000284648.10 UniProtKB/Swiss-Prot
  ENST00000351806 ENTREZGENE
  ENST00000351806.8 UniProtKB/TrEMBL
  ENST00000356532 ENTREZGENE
  ENST00000356532.7 UniProtKB/TrEMBL
  ENST00000358375 ENTREZGENE
  ENST00000358375.9 UniProtKB/TrEMBL
  ENST00000359649 ENTREZGENE
  ENST00000359649.8 UniProtKB/TrEMBL
  ENST00000391760.1 UniProtKB/TrEMBL
  ENST00000391761 ENTREZGENE
  ENST00000391761.5 UniProtKB/Swiss-Prot
  ENST00000610577.4 UniProtKB/Swiss-Prot
  ENST00000610915.4 UniProtKB/Swiss-Prot
  ENST00000610985.4 UniProtKB/Swiss-Prot
  ENST00000611143.4 UniProtKB/Swiss-Prot
  ENST00000611261.4 UniProtKB/TrEMBL
  ENST00000611322.1 UniProtKB/TrEMBL
  ENST00000611450.1 UniProtKB/TrEMBL
  ENST00000611480.4 UniProtKB/Swiss-Prot
  ENST00000611535.4 UniProtKB/Swiss-Prot
  ENST00000611715.4 UniProtKB/Swiss-Prot
  ENST00000611719.4 UniProtKB/Swiss-Prot
  ENST00000611789.4 UniProtKB/TrEMBL
  ENST00000611918.4 UniProtKB/Swiss-Prot
  ENST00000611987.4 UniProtKB/Swiss-Prot
  ENST00000612289.4 UniProtKB/Swiss-Prot
  ENST00000612406.4 UniProtKB/Swiss-Prot
  ENST00000612543.1 UniProtKB/TrEMBL
  ENST00000612953.4 UniProtKB/Swiss-Prot
  ENST00000613426.4 UniProtKB/Swiss-Prot
  ENST00000613814.1 UniProtKB/Swiss-Prot
  ENST00000613895.1 UniProtKB/TrEMBL
  ENST00000614003.4 UniProtKB/Swiss-Prot
  ENST00000614057.1 UniProtKB/TrEMBL
  ENST00000614380.4 UniProtKB/Swiss-Prot
  ENST00000615074.4 UniProtKB/Swiss-Prot
  ENST00000615546.4 UniProtKB/Swiss-Prot
  ENST00000615745.1 UniProtKB/TrEMBL
  ENST00000616215.4 UniProtKB/Swiss-Prot
  ENST00000616227.4 UniProtKB/Swiss-Prot
  ENST00000616232.4 UniProtKB/Swiss-Prot
  ENST00000616461.4 UniProtKB/Swiss-Prot
  ENST00000616758.4 UniProtKB/Swiss-Prot
  ENST00000617140.4 UniProtKB/TrEMBL
  ENST00000617187.4 UniProtKB/Swiss-Prot
  ENST00000617210.4 UniProtKB/Swiss-Prot
  ENST00000617622.4 UniProtKB/Swiss-Prot
  ENST00000617834.4 UniProtKB/Swiss-Prot
  ENST00000617993.4 UniProtKB/Swiss-Prot
  ENST00000618058.1 UniProtKB/TrEMBL
  ENST00000618710.4 UniProtKB/Swiss-Prot
  ENST00000619170.4 UniProtKB/Swiss-Prot
  ENST00000619287.4 UniProtKB/Swiss-Prot
  ENST00000619631.4 UniProtKB/Swiss-Prot
  ENST00000620283.4 UniProtKB/Swiss-Prot
  ENST00000620647.4 UniProtKB/Swiss-Prot
  ENST00000621284.4 UniProtKB/Swiss-Prot
  ENST00000621290.4 UniProtKB/Swiss-Prot
  ENST00000621328.4 UniProtKB/Swiss-Prot
  ENST00000621506.4 UniProtKB/Swiss-Prot
  ENST00000621788.4 UniProtKB/Swiss-Prot
  ENST00000622275.1 UniProtKB/TrEMBL
  ENST00000622288.4 UniProtKB/Swiss-Prot
  ENST00000622326.4 UniProtKB/Swiss-Prot
  ENST00000622843.4 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000170909 GTEx
  ENSG00000273511 GTEx
  ENSG00000274703 GTEx
  ENSG00000275551 GTEx
  ENSG00000275644 GTEx
  ENSG00000275736 GTEx
  ENSG00000276982 GTEx
  ENSG00000277088 GTEx
  ENSG00000278378 GTEx
  ENSG00000278533 GTEx
HGNC ID HGNC:29960 ENTREZGENE
Human Proteome Map OSCAR Human Proteome Map
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:126014 UniProtKB/Swiss-Prot
NCBI Gene 126014 ENTREZGENE
OMIM 606862 OMIM
PANTHER MHC CLASS I NK CELL RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OSTEOCLAST-ASSOCIATED IMMUNOGLOBULIN-LIKE RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ig_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA162398474 PharmGKB
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WV17 ENTREZGENE, UniProtKB/TrEMBL
  A0A087X1R2 ENTREZGENE, UniProtKB/TrEMBL
  A0A0A0MR14 ENTREZGENE, UniProtKB/TrEMBL
  A0A0A0MRF2 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JMM7 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JNK2_HUMAN UniProtKB/TrEMBL
  A8MWV3_HUMAN UniProtKB/TrEMBL
  B7WNS2 ENTREZGENE
  OSCAR_HUMAN UniProtKB/Swiss-Prot
  Q5GRG5 ENTREZGENE
  Q8IYS5 ENTREZGENE
  Q8N763 ENTREZGENE
  Q8NHL4 ENTREZGENE
  Q8WXQ0 ENTREZGENE
  Q8WXQ1 ENTREZGENE
  Q8WXQ2 ENTREZGENE
UniProt Secondary B7WNS2 UniProtKB/Swiss-Prot
  Q5GRG5 UniProtKB/Swiss-Prot
  Q8N763 UniProtKB/Swiss-Prot
  Q8NHL4 UniProtKB/Swiss-Prot
  Q8WXQ0 UniProtKB/Swiss-Prot
  Q8WXQ1 UniProtKB/Swiss-Prot
  Q8WXQ2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-26 OSCAR  osteoclast associated Ig-like receptor  OSCAR  osteoclast associated, immunoglobulin-like receptor  Symbol and/or name change 5135510 APPROVED