C3orf22 (chromosome 3 open reading frame 22) - Rat Genome Database

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Gene: C3orf22 (chromosome 3 open reading frame 22) Homo sapiens
Analyze
Symbol: C3orf22
Name: chromosome 3 open reading frame 22
RGD ID: 1603560
HGNC Page HGNC:28534
Description: ASSOCIATED WITH alkaptonuria; genetic disease; Primary Lymphedema with Myelodysplasia; INTERACTS WITH (+)-catechin; aflatoxin B1; arsane
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC152065; MGC34728; uncharacterized protein C3orf22
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383126,526,999 - 126,558,932 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3126,526,999 - 126,558,965 (-)EnsemblGRCh38hg38GRCh38
GRCh373126,245,842 - 126,277,775 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363127,751,209 - 127,760,448 (-)NCBINCBI36Build 36hg18NCBI36
Celera3124,693,189 - 124,702,399 (-)NCBICelera
Cytogenetic Map3q21.3NCBI
HuRef3123,648,905 - 123,658,113 (-)NCBIHuRef
CHM1_13126,231,527 - 126,240,737 (-)NCBICHM1_1
T2T-CHM13v2.03129,259,307 - 129,291,738 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14702039   PMID:15489334   PMID:16344560  


Genomics

Comparative Map Data
C3orf22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383126,526,999 - 126,558,932 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3126,526,999 - 126,558,965 (-)EnsemblGRCh38hg38GRCh38
GRCh373126,245,842 - 126,277,775 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363127,751,209 - 127,760,448 (-)NCBINCBI36Build 36hg18NCBI36
Celera3124,693,189 - 124,702,399 (-)NCBICelera
Cytogenetic Map3q21.3NCBI
HuRef3123,648,905 - 123,658,113 (-)NCBIHuRef
CHM1_13126,231,527 - 126,240,737 (-)NCBICHM1_1
T2T-CHM13v2.03129,259,307 - 129,291,738 (-)NCBIT2T-CHM13v2.0
BC048671
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39690,278,201 - 90,282,430 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl690,278,201 - 90,282,431 (+)EnsemblGRCm39 Ensembl
GRCm38690,301,219 - 90,305,448 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl690,301,219 - 90,305,449 (+)EnsemblGRCm38mm10GRCm38
MGSCv37690,251,264 - 90,255,442 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36690,266,774 - 90,270,952 (+)NCBIMGSCv36mm8
Celera692,195,104 - 92,199,276 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map640.12NCBI
C4h3orf22
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84124,374,885 - 124,379,380 (+)NCBIGRCr8
mRatBN7.24122,817,681 - 122,822,175 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4122,817,681 - 122,822,175 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4128,284,375 - 128,288,858 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04124,059,148 - 124,063,631 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04122,683,362 - 122,687,845 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04122,217,505 - 122,221,999 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4122,217,505 - 122,221,999 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04186,758,874 - 186,763,369 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44124,564,593 - 124,569,087 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4111,742,535 - 111,746,963 (+)NCBICelera
Cytogenetic Map4q34NCBI
LOC102020573
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542121,945,527 - 21,949,229 (+)NCBIChiLan1.0ChiLan1.0
C2H3orf22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22124,479,862 - 124,489,154 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13124,484,642 - 124,498,688 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03123,599,191 - 123,609,230 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13130,914,841 - 130,924,133 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3130,914,841 - 130,924,133 (-)Ensemblpanpan1.1panPan2
C20H3orf22
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.120752,614 - 758,180 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl20753,461 - 757,115 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha20786,766 - 792,311 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.020764,139 - 769,692 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl20764,133 - 768,646 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.120492,041 - 497,588 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.020821,005 - 826,558 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.020779,899 - 785,446 (-)NCBIUU_Cfam_GSD_1.0
CUNH3orf22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494219,080,330 - 19,082,462 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936898608,726 - 610,110 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUNH3orf22
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12254,455,637 - 54,465,446 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2254,461,735 - 54,465,250 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041111,826,162 - 111,835,348 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in C3orf22
27 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 3q21.3(chr3:126167799-126819908)x3 copy number gain See cases [RCV000051531] Chr3:126167799..126819908 [GRCh38]
Chr3:125886642..126538751 [GRCh37]
Chr3:127369332..128021441 [NCBI36]
Chr3:3q21.3
uncertain significance
NM_152533.2(C3orf22):c.-41+2457T>A single nucleotide variant Lung cancer [RCV000092885] Chr3:126556170 [GRCh38]
Chr3:126275013 [GRCh37]
Chr3:3q21.3
uncertain significance
GRCh38/hg38 3q13.11-29(chr3:103426882-198110178)x3 copy number gain See cases [RCV000134948] Chr3:103426882..198110178 [GRCh38]
Chr3:103145726..197837049 [GRCh37]
Chr3:104628416..199321446 [NCBI36]
Chr3:3q13.11-29
pathogenic
GRCh38/hg38 3q13.2-21.3(chr3:112620977-128734134)x1 copy number loss See cases [RCV000139033] Chr3:112620977..128734134 [GRCh38]
Chr3:112339824..128452977 [GRCh37]
Chr3:113822514..129935667 [NCBI36]
Chr3:3q13.2-21.3
pathogenic
GRCh38/hg38 3q13.33-21.3(chr3:121925147-126782249)x1 copy number loss See cases [RCV000140814] Chr3:121925147..126782249 [GRCh38]
Chr3:121643994..126501092 [GRCh37]
Chr3:123126684..127983782 [NCBI36]
Chr3:3q13.33-21.3
pathogenic
GRCh38/hg38 3q21.3-23(chr3:126106779-140918089)x3 copy number gain See cases [RCV000142010] Chr3:126106779..140918089 [GRCh38]
Chr3:125825622..140636931 [GRCh37]
Chr3:127308312..142119621 [NCBI36]
Chr3:3q21.3-23
uncertain significance
GRCh38/hg38 3q11.1-24(chr3:93800620-145695381)x3 copy number gain See cases [RCV000142340] Chr3:93800620..145695381 [GRCh38]
Chr3:93519464..145413168 [GRCh37]
Chr3:95002154..146895858 [NCBI36]
Chr3:3q11.1-24
pathogenic
GRCh38/hg38 3q13.32-21.3(chr3:118673898-126540730)x1 copy number loss See cases [RCV000143695] Chr3:118673898..126540730 [GRCh38]
Chr3:118392745..126259573 [GRCh37]
Chr3:119875435..127742263 [NCBI36]
Chr3:3q13.32-21.3
pathogenic
GRCh37/hg19 3q21.2-21.3(chr3:124806350-126567150)x4 copy number gain See cases [RCV000448957] Chr3:124806350..126567150 [GRCh37]
Chr3:3q21.2-21.3
uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
NM_152889.3(CHST13):c.748G>T (p.Ala250Ser) single nucleotide variant Inborn genetic diseases [RCV003250202] Chr3:126542300 [GRCh38]
Chr3:126261143 [GRCh37]
Chr3:3q21.3
uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29
pathogenic
Single allele deletion Deafness-lymphedema-leukemia syndrome [RCV001541926] Chr3:123000000..129700000 [GRCh37]
Chr3:3q21.1-22.1
pathogenic
GRCh37/hg19 3q21.2-21.3(chr3:124369671-126423192) copy number loss not provided [RCV000767706] Chr3:124369671..126423192 [GRCh37]
Chr3:3q21.2-21.3
likely pathogenic
GRCh37/hg19 3q13.31-26.31(chr3:116620308-172042292)x3 copy number gain not provided [RCV002472621] Chr3:116620308..172042292 [GRCh37]
Chr3:3q13.31-26.31
pathogenic
GRCh37/hg19 3q21.3(chr3:126269767-126800773)x3 copy number gain not provided [RCV002472486] Chr3:126269767..126800773 [GRCh37]
Chr3:3q21.3
uncertain significance
Single allele deletion Deafness-lymphedema-leukemia syndrome [RCV001541924] Chr3:120247726..128319968 [GRCh37]
Chr3:3q13.33-21.3
pathogenic
GRCh37/hg19 3q21.2-21.3(chr3:124990058-126401548) copy number gain not specified [RCV002053372] Chr3:124990058..126401548 [GRCh37]
Chr3:3q21.2-21.3
uncertain significance
NC_000003.11:g.(?_120365818)_(133465047_?)del deletion Alkaptonuria [RCV002035459] Chr3:120365818..133465047 [GRCh37]
Chr3:3q13.33-22.1
pathogenic
GRCh37/hg19 3q21.3(chr3:126158843-126683166)x3 copy number gain not provided [RCV002475843] Chr3:126158843..126683166 [GRCh37]
Chr3:3q21.3
uncertain significance
NM_152889.3(CHST13):c.407G>C (p.Arg136Pro) single nucleotide variant Inborn genetic diseases [RCV002822881] Chr3:126541959 [GRCh38]
Chr3:126260802 [GRCh37]
Chr3:3q21.3
uncertain significance
NM_152889.3(CHST13):c.608G>T (p.Arg203Leu) single nucleotide variant Inborn genetic diseases [RCV002703907] Chr3:126542160 [GRCh38]
Chr3:126261003 [GRCh37]
Chr3:3q21.3
uncertain significance
NM_152889.3(CHST13):c.670C>T (p.Arg224Cys) single nucleotide variant Inborn genetic diseases [RCV002739706] Chr3:126542222 [GRCh38]
Chr3:126261065 [GRCh37]
Chr3:3q21.3
uncertain significance
NM_152889.3(CHST13):c.604G>C (p.Ala202Pro) single nucleotide variant Inborn genetic diseases [RCV002929462] Chr3:126542156 [GRCh38]
Chr3:126260999 [GRCh37]
Chr3:3q21.3
uncertain significance
NM_152889.3(CHST13):c.483C>A (p.Asn161Lys) single nucleotide variant Inborn genetic diseases [RCV002826564] Chr3:126542035 [GRCh38]
Chr3:126260878 [GRCh37]
Chr3:3q21.3
uncertain significance
NM_152889.3(CHST13):c.961G>A (p.Asp321Asn) single nucleotide variant Inborn genetic diseases [RCV002955336] Chr3:126542513 [GRCh38]
Chr3:126261356 [GRCh37]
Chr3:3q21.3
uncertain significance
NM_152889.3(CHST13):c.568C>G (p.Arg190Gly) single nucleotide variant Inborn genetic diseases [RCV002788502] Chr3:126542120 [GRCh38]
Chr3:126260963 [GRCh37]
Chr3:3q21.3
uncertain significance
NM_152889.3(CHST13):c.868G>A (p.Gly290Arg) single nucleotide variant Inborn genetic diseases [RCV002960294] Chr3:126542420 [GRCh38]
Chr3:126261263 [GRCh37]
Chr3:3q21.3
uncertain significance
NM_152889.3(CHST13):c.970A>G (p.Lys324Glu) single nucleotide variant Inborn genetic diseases [RCV002674611] Chr3:126542522 [GRCh38]
Chr3:126261365 [GRCh37]
Chr3:3q21.3
uncertain significance
NM_152889.3(CHST13):c.992A>G (p.Asn331Ser) single nucleotide variant Inborn genetic diseases [RCV002677777] Chr3:126542544 [GRCh38]
Chr3:126261387 [GRCh37]
Chr3:3q21.3
uncertain significance
NM_152889.3(CHST13):c.385G>A (p.Gly129Ser) single nucleotide variant Inborn genetic diseases [RCV003209416] Chr3:126541937 [GRCh38]
Chr3:126260780 [GRCh37]
Chr3:3q21.3
uncertain significance
NM_152889.3(CHST13):c.949C>G (p.Arg317Gly) single nucleotide variant Inborn genetic diseases [RCV003220644] Chr3:126542501 [GRCh38]
Chr3:126261344 [GRCh37]
Chr3:3q21.3
uncertain significance
NM_152889.3(CHST13):c.215A>G (p.Gln72Arg) single nucleotide variant Inborn genetic diseases [RCV003202339] Chr3:126541767 [GRCh38]
Chr3:126260610 [GRCh37]
Chr3:3q21.3
uncertain significance
NM_152889.3(CHST13):c.294C>G (p.His98Gln) single nucleotide variant Inborn genetic diseases [RCV003373545] Chr3:126541846 [GRCh38]
Chr3:126260689 [GRCh37]
Chr3:3q21.3
uncertain significance
GRCh37/hg19 3q21.2-21.3(chr3:124119718-127457671)x1 copy number loss not specified [RCV003986465] Chr3:124119718..127457671 [GRCh37]
Chr3:3q21.2-21.3
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1002
Count of miRNA genes:559
Interacting mature miRNAs:628
Transcripts:ENST00000318225, ENST00000505070
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH92341  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373126,268,582 - 126,268,719UniSTSGRCh37
Build 363127,751,272 - 127,751,409RGDNCBI36
Celera3124,693,252 - 124,693,389RGD
Cytogenetic Map3q21.3UniSTS
HuRef3123,648,968 - 123,649,105UniSTS
GeneMap99-GB4 RH Map3457.26UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 348 1
Low 10 5 27 22 11 22 13 6 9 3 72 11 1 9
Below cutoff 959 1284 1023 360 547 283 1963 1088 2365 208 650 756 77 467 1498

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_152533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_130715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011512455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011512457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017005751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017005752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017005753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054345360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054345361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054345362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054345363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC024558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK097841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB055549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC007152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000318225   ⟹   ENSP00000316644
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3126,549,692 - 126,558,932 (-)Ensembl
RefSeq Acc Id: ENST00000505070   ⟹   ENSP00000422064
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3126,526,999 - 126,558,965 (-)Ensembl
RefSeq Acc Id: NM_152533   ⟹   NP_689746
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383126,549,692 - 126,558,932 (-)NCBI
GRCh373126,245,842 - 126,277,808 (-)NCBI
Build 363127,751,209 - 127,760,448 (-)NCBI Archive
Celera3124,693,189 - 124,702,399 (-)RGD
HuRef3123,648,905 - 123,658,113 (-)ENTREZGENE
CHM1_13126,231,527 - 126,240,787 (-)NCBI
T2T-CHM13v2.03129,282,512 - 129,291,724 (-)NCBI
Sequence:
RefSeq Acc Id: NR_130715
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383126,526,999 - 126,558,932 (-)NCBI
CHM1_13126,208,862 - 126,240,787 (-)NCBI
T2T-CHM13v2.03129,259,307 - 129,291,724 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011512455   ⟹   XP_011510757
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383126,546,620 - 126,558,932 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011512457   ⟹   XP_011510759
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383126,545,764 - 126,558,932 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017005751   ⟹   XP_016861240
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383126,549,692 - 126,558,932 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017005752   ⟹   XP_016861241
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383126,549,692 - 126,558,373 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054345360   ⟹   XP_054201335
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03129,282,512 - 129,291,738 (-)NCBI
RefSeq Acc Id: XM_054345361   ⟹   XP_054201336
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03129,282,512 - 129,291,165 (-)NCBI
RefSeq Acc Id: XM_054345362   ⟹   XP_054201337
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03129,279,439 - 129,291,724 (-)NCBI
RefSeq Acc Id: XM_054345363   ⟹   XP_054201338
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03129,278,583 - 129,291,724 (-)NCBI
RefSeq Acc Id: NP_689746   ⟸   NM_152533
- UniProtKB: B3KUS9 (UniProtKB/Swiss-Prot),   Q8N5N4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011510759   ⟸   XM_011512457
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011510757   ⟸   XM_011512455
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_016861240   ⟸   XM_017005751
- Peptide Label: isoform X1
- UniProtKB: B3KUS9 (UniProtKB/Swiss-Prot),   Q8N5N4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016861241   ⟸   XM_017005752
- Peptide Label: isoform X1
- UniProtKB: B3KUS9 (UniProtKB/Swiss-Prot),   Q8N5N4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000422064   ⟸   ENST00000505070
RefSeq Acc Id: ENSP00000316644   ⟸   ENST00000318225
RefSeq Acc Id: XP_054201338   ⟸   XM_054345363
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054201337   ⟸   XM_054345362
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054201335   ⟸   XM_054345360
- Peptide Label: isoform X1
- UniProtKB: Q8N5N4 (UniProtKB/Swiss-Prot),   B3KUS9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054201336   ⟸   XM_054345361
- Peptide Label: isoform X1
- UniProtKB: Q8N5N4 (UniProtKB/Swiss-Prot),   B3KUS9 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8N5N4-F1-model_v2 AlphaFold Q8N5N4 1-141 view protein structure

Promoters
RGD ID:6865550
Promoter ID:EPDNEW_H5940
Type:initiation region
Name:C3orf22_1
Description:chromosome 3 open reading frame 22
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh383126,558,932 - 126,558,992EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:28534 AgrOrtholog
COSMIC C3orf22 COSMIC
Ensembl Genes ENSG00000180697 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000318225 ENTREZGENE
  ENST00000318225.3 UniProtKB/Swiss-Prot
  ENST00000505070 ENTREZGENE
  ENST00000505070.5 UniProtKB/Swiss-Prot
GTEx ENSG00000180697 GTEx
HGNC ID HGNC:28534 ENTREZGENE
Human Proteome Map C3orf22 Human Proteome Map
InterPro C3orf22 UniProtKB/Swiss-Prot
KEGG Report hsa:152065 UniProtKB/Swiss-Prot
NCBI Gene 152065 ENTREZGENE
PANTHER HYPOTHETICAL PROTEIN LOC685964 UniProtKB/Swiss-Prot
  PTHR37875 UniProtKB/Swiss-Prot
PharmGKB PA142672383 PharmGKB
UniProt B3KUS9 ENTREZGENE
  CC022_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary B3KUS9 UniProtKB/Swiss-Prot