CNTD1 (cyclin N-terminal domain containing 1)

Gene: CNTD1 (cyclin N-terminal domain containing 1) Homo sapiens

Analyze

Symbol:

CNTD1

Name:

cyclin N-terminal domain containing 1

RGD ID:

1603365

HGNC Page

HGNC:26847

Description:

Predicted to be involved in reciprocal meiotic recombination and regulation of meiotic cell cycle. Predicted to act upstream of or within spermatogenesis. Predicted to be located in chromosome. Predicted to be active in site of double-strand break.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CNTD; COSA1; cyclin N-terminal domain-containing protein 1; FLJ40137

RGD Orthologs

Alliance Genes

More Info

more info ...

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	42,798,785 - 42,811,587 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	42,798,800 - 42,811,587 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	40,950,879 - 40,963,605 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	38,204,464 - 38,216,179 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	37,606,841 - 37,619,590 (+)	NCBI		Celera
Cytogenetic Map	17	q21.2-q21.31	NCBI
HuRef	17	36,715,242 - 36,727,994 (+)	NCBI		HuRef
CHM1_1	17	41,186,440 - 41,199,222 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	43,655,867 - 43,668,726 (+)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

ammonium chloride (ISO)

astaxanthin (ISO)

benzo[a]pyrene (EXP)

bisphenol A (ISO)

Bisphenol A diglycidyl ether (ISO)

cadmium dichloride (ISO)

CGP 52608 (EXP)

gentamycin (ISO)

glycidol (ISO)

ozone (ISO)

paracetamol (ISO)

pioglitazone (ISO)

resveratrol (EXP)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (EXP,ISO)

trichloroethene (ISO)

triptonide (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

meiotic cell cycle (IEA)

reciprocal meiotic recombination (IBA,IEA,ISO)

regulation of meiotic cell cycle (IEA,ISS)

spermatogenesis (IEA,ISO)

Cellular Component

chromosome (IEA,ISS)

cytoplasm (IEA)

nucleus (IEA)

site of double-strand break (IBA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:14702039	PMID:17207965	PMID:21873635	PMID:24891606	PMID:25356737	PMID:32807901	PMID:35509820

Genomics

Comparative Map Data

CNTD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	42,798,785 - 42,811,587 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	42,798,800 - 42,811,587 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	40,950,879 - 40,963,605 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	38,204,464 - 38,216,179 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	37,606,841 - 37,619,590 (+)	NCBI		Celera
Cytogenetic Map	17	q21.2-q21.31	NCBI
HuRef	17	36,715,242 - 36,727,994 (+)	NCBI		HuRef
CHM1_1	17	41,186,440 - 41,199,222 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	43,655,867 - 43,668,726 (+)	NCBI		T2T-CHM13v2.0

Cntd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	101,170,029 - 101,179,527 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	101,169,838 - 101,187,143 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	101,279,203 - 101,288,701 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	101,279,012 - 101,296,317 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	101,140,517 - 101,150,015 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	101,095,293 - 101,104,791 (+)	NCBI		MGSCv36	mm8
MGSCv36	11	102,058,288 - 102,067,873 (+)	NCBI		MGSCv36	mm8
Cytogenetic Map	11	D	NCBI
cM Map	11	64.56	NCBI

Cntd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	86,721,692 - 86,732,074 (+)	NCBI		GRCr8
mRatBN7.2	10	86,221,430 - 86,231,812 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	10	91,259,174 - 91,269,564 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	90,733,705 - 90,744,087 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	86,126,873 - 86,137,255 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	89,199,988 - 89,210,369 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	89,199,880 - 89,209,393 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	88,998,374 - 89,009,400 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	90,308,109 - 90,316,974 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	84,939,437 - 84,949,768 (+)	NCBI		Celera
Cytogenetic Map	10	q31	NCBI

Cntd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	16,608,934 - 16,616,086 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	16,608,810 - 16,617,095 (+)	NCBI	ChiLan1.0	ChiLan1.0

CNTD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	22,173,569 - 22,187,093 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	24,065,236 - 24,077,219 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	14,506,354 - 14,519,279 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	14,731,829 - 14,744,396 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	14,731,829 - 14,744,338 (-)	Ensembl	panpan1.1		panPan2

CNTD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	20,214,310 - 20,222,938 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	20,188,167 - 20,222,743 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	19,675,628 - 19,684,264 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	20,930,820 - 20,941,331 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	20,933,815 - 20,941,139 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	19,717,591 - 19,726,224 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	19,983,830 - 19,992,465 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	20,086,531 - 20,095,163 (-)	NCBI		UU_Cfam_GSD_1.0

Cntd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	19,557,743 - 19,565,579 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	17,509,619 - 17,517,396 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	17,509,619 - 17,517,396 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CNTD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	20,053,516 - 20,062,708 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	20,054,572 - 20,062,754 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	20,268,434 - 20,277,711 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CNTD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	63,482,279 - 63,490,359 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666077	34,273,460 - 34,285,198 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cntd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	1,406,954 - 1,414,432 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	1,403,809 - 1,414,524 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CNTD1
15 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 17q21.33-24.2(chr17:36449220-68170214)x3	copy number gain	See cases [RCV000050957]	Chr17:36449220..68170214 [GRCh38] Chr17:48563237..65936105 [GRCh37] Chr17:45918236..63677950 [NCBI36] Chr17:17q21.33-24.2	pathogenic
GRCh38/hg38 17q23.2-25.3(chr17:36449220-83086677)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]\|See cases [RCV000052483]	Chr17:36449220..83086677 [GRCh38] Chr17:58617905..81044553 [GRCh37] Chr17:55972687..78637842 [NCBI36] Chr17:17q23.2-25.3	pathogenic
GRCh38/hg38 17q12-21.31(chr17:39199873-45629579)x3	copy number gain	See cases [RCV000052479]	Chr17:39199873..45629579 [GRCh38] Chr17:37356126..43706945 [GRCh37] Chr17:34609652..41062728 [NCBI36] Chr17:17q12-21.31	pathogenic
GRCh38/hg38 17q23.1-25.1(chr17:36449220-75053130)x3	copy number gain	See cases [RCV000137437]	Chr17:36449220..75053130 [GRCh38] Chr17:57595736..73049225 [GRCh37] Chr17:54950518..70560820 [NCBI36] Chr17:17q23.1-25.1	pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)	copy number gain	See cases [RCV000511439]	Chr17:526..81041938 [GRCh37] Chr17:17p13.3-q25.3	pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)x3	copy number gain	See cases [RCV000512441]	Chr17:526..81041938 [GRCh37] Chr17:17p13.3-q25.3	pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:8547-81060040)x3	copy number gain	not provided [RCV000739324]	Chr17:8547..81060040 [GRCh37] Chr17:17p13.3-q25.3	pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:7214-81058310)x3	copy number gain	not provided [RCV000739320]	Chr17:7214..81058310 [GRCh37] Chr17:17p13.3-q25.3	pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:12344-81057996)x3	copy number gain	not provided [RCV000739325]	Chr17:12344..81057996 [GRCh37] Chr17:17p13.3-q25.3	pathogenic
NM_173478.3(CNTD1):c.311G>C (p.Arg104Thr)	single nucleotide variant	Inborn genetic diseases [RCV002970022]	Chr17:42804290 [GRCh38] Chr17:40956308 [GRCh37] Chr17:17q21.31	likely benign
NM_173478.3(CNTD1):c.959G>C (p.Arg320Thr)	single nucleotide variant	Inborn genetic diseases [RCV002682509]	Chr17:42809501 [GRCh38] Chr17:40961519 [GRCh37] Chr17:17q21.31	uncertain significance
NM_173478.3(CNTD1):c.70A>G (p.Thr24Ala)	single nucleotide variant	Inborn genetic diseases [RCV002870409]	Chr17:42799137 [GRCh38] Chr17:40951155 [GRCh37] Chr17:17q21.2	uncertain significance
NM_173478.3(CNTD1):c.691T>G (p.Ser231Ala)	single nucleotide variant	Inborn genetic diseases [RCV002783376]	Chr17:42806784 [GRCh38] Chr17:40958802 [GRCh37] Chr17:17q21.31	uncertain significance
NM_173478.3(CNTD1):c.368G>A (p.Arg123His)	single nucleotide variant	Inborn genetic diseases [RCV002799070]	Chr17:42804347 [GRCh38] Chr17:40956365 [GRCh37] Chr17:17q21.31	uncertain significance
NM_173478.3(CNTD1):c.719T>C (p.Leu240Pro)	single nucleotide variant	Inborn genetic diseases [RCV002822567]	Chr17:42806812 [GRCh38] Chr17:40958830 [GRCh37] Chr17:17q21.31	uncertain significance
NM_173478.3(CNTD1):c.7G>A (p.Gly3Arg)	single nucleotide variant	Inborn genetic diseases [RCV002709009]	Chr17:42799074 [GRCh38] Chr17:40951092 [GRCh37] Chr17:17q21.2	likely benign
NM_173478.3(CNTD1):c.952G>A (p.Ala318Thr)	single nucleotide variant	Inborn genetic diseases [RCV002984581]	Chr17:42809494 [GRCh38] Chr17:40961512 [GRCh37] Chr17:17q21.31	uncertain significance
NM_173478.3(CNTD1):c.869T>C (p.Ile290Thr)	single nucleotide variant	Inborn genetic diseases [RCV002655897]	Chr17:42809411 [GRCh38] Chr17:40961429 [GRCh37] Chr17:17q21.31	uncertain significance
NM_173478.3(CNTD1):c.759G>A (p.Met253Ile)	single nucleotide variant	Inborn genetic diseases [RCV003199011]	Chr17:42807801 [GRCh38] Chr17:40959819 [GRCh37] Chr17:17q21.31	uncertain significance
NM_173478.3(CNTD1):c.136C>T (p.Arg46Trp)	single nucleotide variant	Inborn genetic diseases [RCV003284906]	Chr17:42799203 [GRCh38] Chr17:40951221 [GRCh37] Chr17:17q21.2	uncertain significance
NM_173478.3(CNTD1):c.694A>G (p.Ile232Val)	single nucleotide variant	Inborn genetic diseases [RCV003285122]	Chr17:42806787 [GRCh38] Chr17:40958805 [GRCh37] Chr17:17q21.31	uncertain significance
NM_173478.3(CNTD1):c.968A>T (p.Lys323Met)	single nucleotide variant	Inborn genetic diseases [RCV003342354]	Chr17:42809510 [GRCh38] Chr17:40961528 [GRCh37] Chr17:17q21.31	uncertain significance
NM_173478.3(CNTD1):c.131C>T (p.Ser44Leu)	single nucleotide variant	Inborn genetic diseases [RCV003379373]	Chr17:42799198 [GRCh38] Chr17:40951216 [GRCh37] Chr17:17q21.2	uncertain significance

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1526
Count of miRNA genes:	854
Interacting mature miRNAs:	985
Transcripts:	ENST00000315066, ENST00000585355, ENST00000586652, ENST00000588408, ENST00000588527, ENST00000591559, ENST00000592166
Prediction methods:	Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region

STS-U17909

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	17	40,961,977 - 40,962,157	UniSTS	GRCh37
Build 36	17	38,215,503 - 38,215,683	RGD	NCBI36
Celera	17	37,617,962 - 37,618,142	RGD
Cytogenetic Map	17	q21.31	UniSTS
Cytogenetic Map	17	q21	UniSTS
HuRef	17	36,726,366 - 36,726,546	UniSTS
GeneMap99-GB4 RH Map	17	311.36	UniSTS

D17S1146

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	17	40,953,491 - 40,953,623	UniSTS	GRCh37
Build 36	17	38,207,017 - 38,207,149	RGD	NCBI36
Celera	17	37,609,478 - 37,609,608	RGD
Cytogenetic Map	17	q21.31	UniSTS
HuRef	17	36,717,879 - 36,718,012	UniSTS

D17S1321

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	17	40,953,495 - 40,953,648	UniSTS	GRCh37
Build 36	17	38,207,021 - 38,207,174	RGD	NCBI36
Celera	17	37,609,482 - 37,609,633	RGD
Cytogenetic Map	17	q21.31	UniSTS
HuRef	17	36,717,883 - 36,718,037	UniSTS

STS-U18006

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	17	40,950,551 - 40,950,676	UniSTS	GRCh37
Build 36	17	38,204,077 - 38,204,202	RGD	NCBI36
Celera	17	37,606,538 - 37,606,663	RGD
Cytogenetic Map	17	q21.31	UniSTS
Cytogenetic Map	17	q21	UniSTS
HuRef	17	36,714,939 - 36,715,064	UniSTS
GeneMap99-GB4 RH Map	17	311.56	UniSTS
NCBI RH Map	17	511.3	UniSTS

WI-17766

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	17	40,949,667 - 40,949,797	UniSTS	GRCh37
Build 36	17	38,203,193 - 38,203,323	RGD	NCBI36
Celera	17	37,605,654 - 37,605,784	RGD
Cytogenetic Map	17	q21.31	UniSTS
Cytogenetic Map	17	q21	UniSTS
HuRef	17	36,714,055 - 36,714,185	UniSTS
GeneMap99-GB4 RH Map	17	311.56	UniSTS
Whitehead-RH Map	17	347.9	UniSTS
NCBI RH Map	17	511.3	UniSTS

G20453

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	17	40,962,228 - 40,962,410	UniSTS	GRCh37
Build 36	17	38,215,754 - 38,215,936	RGD	NCBI36
Celera	17	37,618,213 - 37,618,395	RGD
Cytogenetic Map	17	q21.31	UniSTS
Cytogenetic Map	17	q21	UniSTS
HuRef	17	36,726,617 - 36,726,799	UniSTS

A005R43

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	17	40,962,228 - 40,962,410	UniSTS	GRCh37
Build 36	17	38,215,754 - 38,215,936	RGD	NCBI36
Celera	17	37,618,213 - 37,618,395	RGD
Cytogenetic Map	17	q21.31	UniSTS
Cytogenetic Map	17	q21	UniSTS
HuRef	17	36,726,617 - 36,726,799	UniSTS
GeneMap99-GB4 RH Map	17	308.5	UniSTS

WI-11793

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	17	40,962,161 - 40,962,310	UniSTS	GRCh37
Build 36	17	38,215,687 - 38,215,836	RGD	NCBI36
Celera	17	37,618,146 - 37,618,295	RGD
Cytogenetic Map	17	q21.31	UniSTS
Cytogenetic Map	17	q21	UniSTS
HuRef	17	36,726,550 - 36,726,699	UniSTS
GeneMap99-GB4 RH Map	17	308.5	UniSTS
Whitehead-RH Map	17	347.6	UniSTS

RH47257

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	17	40,948,957 - 40,949,076	UniSTS	GRCh37
Build 36	17	38,202,483 - 38,202,602	RGD	NCBI36
Celera	17	37,604,944 - 37,605,063	RGD
Cytogenetic Map	17	q21.31	UniSTS
Cytogenetic Map	17	q21-q22	UniSTS
HuRef	17	36,713,345 - 36,713,464	UniSTS
GeneMap99-GB4 RH Map	17	303.84	UniSTS
NCBI RH Map	17	352.4	UniSTS

RH17649

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	17	40,962,333 - 40,962,571	UniSTS	GRCh37
Build 36	17	38,215,859 - 38,216,097	RGD	NCBI36
Celera	17	37,618,318 - 37,618,556	RGD
Cytogenetic Map	17	q21.31	UniSTS
Cytogenetic Map	17	q21	UniSTS
HuRef	17	36,726,722 - 36,726,960	UniSTS
GeneMap99-GB4 RH Map	17	315.43	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

adipose tissue

appendage

entire extraembryonic component

High

Medium

371

Low

2368

2274

1604

524

1619

362

3521

1209

3355

353

1015

1516

170

1200

2045

Below cutoff

708

105

299

832

980

373

743

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001330222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_173478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005257043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005257045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006721690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011524310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011524311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017024171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_024450569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054315022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054315023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC016889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK097456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK302094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL833052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC026187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DC397820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000315066

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	17	42,805,404 - 42,811,587 (+)	Ensembl

RefSeq Acc Id:

ENST00000585355 ⟹ ENSP00000465999

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	17	42,798,800 - 42,806,778 (+)	Ensembl

RefSeq Acc Id:

ENST00000586652 ⟹ ENSP00000467787

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	17	42,805,866 - 42,809,579 (+)	Ensembl

RefSeq Acc Id:

ENST00000588408 ⟹ ENSP00000465204

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	17	42,798,861 - 42,811,587 (+)	Ensembl

RefSeq Acc Id:

ENST00000588527 ⟹ ENSP00000468725

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	17	42,798,887 - 42,809,887 (+)	Ensembl

RefSeq Acc Id:

ENST00000591559

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	17	42,798,870 - 42,804,396 (+)	Ensembl

RefSeq Acc Id:

ENST00000592166 ⟹ ENSP00000468459

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	17	42,798,854 - 42,807,808 (+)	Ensembl

RefSeq Acc Id:

NM_001330222 ⟹ NP_001317151

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	17	42,798,861 - 42,811,587 (+)	NCBI
T2T-CHM13v2.0	17	43,656,001 - 43,668,726 (+)	NCBI

Sequence:

show sequence

GAGGAGTCCGTGGCCGTTGGGGCGGGAAAAAGCTGTGGAGGGTTCGAGGCTGTGGTGGTAATTG
GGTTTTCCTCAGACTTGAGGCGACGACACACTCATTGGAAGGGGACGAGGAATCCAGGGTGTGG
CAGAAGACTGGAGAGGAGCTAAGGGGGTCGAGTTTGTTTTTCTCCTGTCTGAACAATGGTGTCT
GGAGAAATCTGTGAGCTACCAGGCTGTAGAAATCCTAGAAAGGTTTATGGTAAAACAGGCAGAG
AACATCTGCAGGCAAGCCACAATCCAGCCAAGAGATAATAAGAGAGAGTCTCAGAATTGGAGGG
CTCTGAAACAGCAGCTTGTCAACAAGTTTACTCTCCGTCTTGTGTCATGTGTTCAGCTGGCCAG
CAAACTTTCCTTCCGAAACAAAATAATCAGCAACATTACAGTCTTGAATTTCCTCCAGGCTCTA
GGCTATCTACACACTAAAGAAGAACTGCTGGAATCAGAGCTTGATGTTTTGAAGTCCTTGAACT
TCCGAATTAATCTGCCCACTCCCCTGGCATATGTGGAGACGCTCCTAGAGGTTTTAGGATACAA
TGGCTGTTTGGTTCCAGCCATGAGGCTGCATGCAACCTGCCTGACACTGCTCGACCTGGTCTAT
CTTCTGCATGAACCCATATATGAGAGCCTGTTGAGGGCTTCAATTGAGAACTCCACTCCCAGTC
AGCTGCAAGGGGAAAAGTTTACTTCAGTGAAGGAAGACTTCATGCTGTTGGCAGTAGGAATCAT
TGCAGCAAGTGCTTTCATCCAAAACCATGAGTGTTGGAGCCAGGTTGTGGGGCATTTGCAGAGC
ATCACTGGTATTGCCTTGGCAAGCATTGCTGAGTTCTCTTATGCAATCCTGACTCACGGAGTGG
GAGCCAACACTCCGGGGAGACAGCAGTCTATTCCTCCCCACCTGGCAGCCAGAGCTCTGAAGAC
TGTTGCTTCCTCTAACACATGAGGGAGGCTGAATCCACCAAATATAAACAGCCATCCGTCACTG
CACTCATGCCTCCCTCTGTTTACTTTCATACTAAGGGTACAAAAATTCCAAGTCTCTTTTGAAC
TGTATTTTGTATGCCAATTTCATGCTTATTTTTCCTTTATCAGAGAGAGTTAAGGTGGACGAGC
ATGCCCTTTTTGTCATATCAGCCTGAAAATGTTAAAAAGCTAGGTGGAGACAGATTAGTTGTTT
CATTTTTGTTTAACAAGGTATTTATACTTTTAGCTTAATTTCATTAAGAGGAACATCAGGCATT
GCAATCAGTATTAATCAGGGGCTCAAATACAGACTATCTGGGTGACCTTGACTAAGCATCAAGG
AGGTAGCCTTTATTTCCCCTTAAAATTAGTTTAACATCTCTGTTCCATTATTCAGATCTACACA
AACAAGGCTTCCTCAACAGCTATCTATTTTTACTAGAGTCTTTTTTTAAAACTAAAACTAACTC
TAAAGAAGTTTCAACAGAATTTCCACATACCTGCATTCATTAGAACTTGATTCTCCCAGAATAC
AAAGTACTCTATTTTAAAGAAAAACCCAACAGTGCACCCCTGGGCAGTTTTCAGACTGCAGCAA
ATCTTTTATTACAAATAATTAAATCTCTCCATAATGTCTCAAACAGTATCAAACACCATTTCAT
ATCTCTAACACAGAGCAGAGTCGGCATTCAGTATAAGAACCAAGTGAAAAGTGTTAAATTTCAA
GCATCTGATCACATCACATGGTGACCAGGTAAAGCTTAGATGTCATTTTCCCACATTATCCAAC
TGTGCATCTCAAACATATCCTCATCTCAGTAAAGACAAAAGTTTCTATTTCATATTGTTAAGTG
CAGGAAGTTGAGAGAGATAAAAATCCAGTGAAAACACATCAATCTCAATTCAACTCAGTTAAAA
AAAAGAAAAGCAAATTTAAATTAGTTTTTTTCAGAGAAGAAAGGGAAAGGAGTCCATGGGGTTA
AGAATCAAAACTGACCAGGGCTGGCAACTATAGATGGCATGTTGTAGCTCTGGAAAGTATCTGT
CACATGATATTTTAAAATAAAGTGGCTTTTGTGGATTTTTTCTTTTTTGGTATTGTAAACATGT
ACTGTTTAATATTACCCGAATTTAATTTAAAACATGTTTGCAAACAAAACAAAATTAAAAGCCT
TTAAGGCAAACCTCCCCCTAAGGAAAAAAGTCATTTGTTATAAAATTGTGAGGACACCCAAGCA
AGACCCCACTTAAGATTCGTCAGCATGAACTTGAGAGCTTTTGTCCACTGCTCCTCAGAGTTAA
ACTGGGTTTTGATGGAATAGGAGCCGCCACTGCCTCCTGTGTCTTCAATCTTGCCTTTCTCCAC
ATCCATCCTGCAGATGGACAGAGCAAAACTCATTAGTAACTGAGATCTGAGTTAAGTAAGTTCG
GGGCAGGGACTTGATCATGGGACCATTCACGTCATTTTATCTATTAAAGAACACTTGGTGAGGA
ATGATAGTGTATTTTGGATTTGCTTGAAAGCCAAAAATCAAGAAGACTGTCACAAGAGCCTCAT
TGTCATTGCAGAGTACAGGGACAGGACACACACCCAAAGAGAAGAGAAGCCTGGAGTAGGGGTG
AGTGAGGGTTACAGTACTTCTTGCTGTTTTCCTAGGCATCCCTGAACTTGGCGGGGGAGAAAGG
AGGCAGAAGAAAAGAAATGCTTTGTTTTGGGGTGATAGAAGCAGCCTTACTCTAAGTAAAAACT
AGAGTTTCCATCCATCAATGGGATCCTAGAAAAATCAAAAGAAGCATTCCTGTGTATTTCCAAG
GGCTTCAGGGAAAAACCTTCTTGAAACTGGAGAGGAGGCTTGAGCTCTATGCCAAGAAAACCCC
CTAAACCATCTAAGGCAACATTCTTCTACTCCAAGGACTAGGTGGTCACATTCTGTCCTGCTTG
CAGTACTGGGTCAGTCTCTGCCCATCAATGTCATGTGATTCTGTGCCATTTTTTTGCTTTCCCA
CCATTTATACTGTTTTGCCTCCATTA

hide sequence

RefSeq Acc Id:

NM_173478 ⟹ NP_775749

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	17	42,798,861 - 42,811,587 (+)	NCBI
GRCh37	17	40,950,609 - 40,963,605 (+)	NCBI
Build 36	17	38,204,464 - 38,216,179 (+)	NCBI Archive
Celera	17	37,606,841 - 37,619,590 (+)	RGD
HuRef	17	36,715,242 - 36,727,994 (+)	ENTREZGENE
CHM1_1	17	41,186,440 - 41,199,222 (+)	NCBI
T2T-CHM13v2.0	17	43,656,001 - 43,668,726 (+)	NCBI

Sequence:

show sequence

GAGGAGTCCGTGGCCGTTGGGGCGGGAAAAAGCTGTGGAGGGTTCGAGGCTGTGGTGGTAATTG
GGTTTTCCTCAGACTTGAGGCGACGACACACTCATTGGAAGGGGACGAGGAATCCAGGGTGTGG
CAGAAGACTGGAGAGGAGCTAAGGGGGTCGGTATGTGGATCCAGTGAACCCGTCCAGGTGCCCC
AAGAGGCTCGTGAATATGGACGGACCCATGAGGCCACGATCGGCCTCCCTCGTTGACTTTCAGT
TTGGAGTTGTCGCCACAGAGACGATTGAAGACGCCCTGCTTCACTTGGCCCAGCAGAATGAGCA
AGCAGTGAGGGAGGCTTCGGGGCGGCTGGGCCGCTTCAGGGAGCCCCAGATCGTGGAGTTTGTT
TTTCTCCTGTCTGAACAATGGTGTCTGGAGAAATCTGTGAGCTACCAGGCTGTAGAAATCCTAG
AAAGGTTTATGGTAAAACAGGCAGAGAACATCTGCAGGCAAGCCACAATCCAGCCAAGAGATAA
TAAGAGAGAGTCTCAGAATTGGAGGGCTCTGAAACAGCAGCTTGTCAACAAGTTTACTCTCCGT
CTTGTGTCATGTGTTCAGCTGGCCAGCAAACTTTCCTTCCGAAACAAAATAATCAGCAACATTA
CAGTCTTGAATTTCCTCCAGGCTCTAGGCTATCTACACACTAAAGAAGAACTGCTGGAATCAGA
GCTTGATGTTTTGAAGTCCTTGAACTTCCGAATTAATCTGCCCACTCCCCTGGCATATGTGGAG
ACGCTCCTAGAGGTTTTAGGATACAATGGCTGTTTGGTTCCAGCCATGAGGCTGCATGCAACCT
GCCTGACACTGCTCGACCTGGTCTATCTTCTGCATGAACCCATATATGAGAGCCTGTTGAGGGC
TTCAATTGAGAACTCCACTCCCAGTCAGCTGCAAGGGGAAAAGTTTACTTCAGTGAAGGAAGAC
TTCATGCTGTTGGCAGTAGGAATCATTGCAGCAAGTGCTTTCATCCAAAACCATGAGTGTTGGA
GCCAGGTTGTGGGGCATTTGCAGAGCATCACTGGTATTGCCTTGGCAAGCATTGCTGAGTTCTC
TTATGCAATCCTGACTCACGGAGTGGGAGCCAACACTCCGGGGAGACAGCAGTCTATTCCTCCC
CACCTGGCAGCCAGAGCTCTGAAGACTGTTGCTTCCTCTAACACATGAGGGAGGCTGAATCCAC
CAAATATAAACAGCCATCCGTCACTGCACTCATGCCTCCCTCTGTTTACTTTCATACTAAGGGT
ACAAAAATTCCAAGTCTCTTTTGAACTGTATTTTGTATGCCAATTTCATGCTTATTTTTCCTTT
ATCAGAGAGAGTTAAGGTGGACGAGCATGCCCTTTTTGTCATATCAGCCTGAAAATGTTAAAAA
GCTAGGTGGAGACAGATTAGTTGTTTCATTTTTGTTTAACAAGGTATTTATACTTTTAGCTTAA
TTTCATTAAGAGGAACATCAGGCATTGCAATCAGTATTAATCAGGGGCTCAAATACAGACTATC
TGGGTGACCTTGACTAAGCATCAAGGAGGTAGCCTTTATTTCCCCTTAAAATTAGTTTAACATC
TCTGTTCCATTATTCAGATCTACACAAACAAGGCTTCCTCAACAGCTATCTATTTTTACTAGAG
TCTTTTTTTAAAACTAAAACTAACTCTAAAGAAGTTTCAACAGAATTTCCACATACCTGCATTC
ATTAGAACTTGATTCTCCCAGAATACAAAGTACTCTATTTTAAAGAAAAACCCAACAGTGCACC
CCTGGGCAGTTTTCAGACTGCAGCAAATCTTTTATTACAAATAATTAAATCTCTCCATAATGTC
TCAAACAGTATCAAACACCATTTCATATCTCTAACACAGAGCAGAGTCGGCATTCAGTATAAGA
ACCAAGTGAAAAGTGTTAAATTTCAAGCATCTGATCACATCACATGGTGACCAGGTAAAGCTTA
GATGTCATTTTCCCACATTATCCAACTGTGCATCTCAAACATATCCTCATCTCAGTAAAGACAA
AAGTTTCTATTTCATATTGTTAAGTGCAGGAAGTTGAGAGAGATAAAAATCCAGTGAAAACACA
TCAATCTCAATTCAACTCAGTTAAAAAAAAGAAAAGCAAATTTAAATTAGTTTTTTTCAGAGAA
GAAAGGGAAAGGAGTCCATGGGGTTAAGAATCAAAACTGACCAGGGCTGGCAACTATAGATGGC
ATGTTGTAGCTCTGGAAAGTATCTGTCACATGATATTTTAAAATAAAGTGGCTTTTGTGGATTT
TTTCTTTTTTGGTATTGTAAACATGTACTGTTTAATATTACCCGAATTTAATTTAAAACATGTT
TGCAAACAAAACAAAATTAAAAGCCTTTAAGGCAAACCTCCCCCTAAGGAAAAAAGTCATTTGT
TATAAAATTGTGAGGACACCCAAGCAAGACCCCACTTAAGATTCGTCAGCATGAACTTGAGAGC
TTTTGTCCACTGCTCCTCAGAGTTAAACTGGGTTTTGATGGAATAGGAGCCGCCACTGCCTCCT
GTGTCTTCAATCTTGCCTTTCTCCACATCCATCCTGCAGATGGACAGAGCAAAACTCATTAGTA
ACTGAGATCTGAGTTAAGTAAGTTCGGGGCAGGGACTTGATCATGGGACCATTCACGTCATTTT
ATCTATTAAAGAACACTTGGTGAGGAATGATAGTGTATTTTGGATTTGCTTGAAAGCCAAAAAT
CAAGAAGACTGTCACAAGAGCCTCATTGTCATTGCAGAGTACAGGGACAGGACACACACCCAAA
GAGAAGAGAAGCCTGGAGTAGGGGTGAGTGAGGGTTACAGTACTTCTTGCTGTTTTCCTAGGCA
TCCCTGAACTTGGCGGGGGAGAAAGGAGGCAGAAGAAAAGAAATGCTTTGTTTTGGGGTGATAG
AAGCAGCCTTACTCTAAGTAAAAACTAGAGTTTCCATCCATCAATGGGATCCTAGAAAAATCAA
AAGAAGCATTCCTGTGTATTTCCAAGGGCTTCAGGGAAAAACCTTCTTGAAACTGGAGAGGAGG
CTTGAGCTCTATGCCAAGAAAACCCCCTAAACCATCTAAGGCAACATTCTTCTACTCCAAGGAC
TAGGTGGTCACATTCTGTCCTGCTTGCAGTACTGGGTCAGTCTCTGCCCATCAATGTCATGTGA
TTCTGTGCCATTTTTTTGCTTTCCCACCATTTATACTGTTTTGCCTCCATTA

hide sequence

RefSeq Acc Id:

XM_011524311 ⟹ XP_011522613

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	17	42,798,785 - 42,811,587 (+)	NCBI

Sequence:

show sequence

CAGTGGACTCTGGGAGTTGTAGTCCGCGTGCCCTTTGCGGGGCAGAGCCGCGGTTCCCGGGCAC
AGGGGATGGACGCGGGAGGTTTATGGTAAAACAGGCAGAGAACATCTGCAGGCAAGCCACAATC
CAGCCAAGAGATAATAAGAGAGAGTCTCAGAATTGGAGGGCTCTGAAACAGCAGCTTGTCAACA
AGTTTACTCTCCGTCTTGTGTCATGTGTTCAGCTGGCCAGCAAACTTTCCTTCCGAAACAAAAT
AATCAGCAACATTACAGTCTTGAATTTCCTCCAGGCTCTAGGCTATCTACACACTAAAGAAGAA
CTGCTGGAATCAGAGCTTGATGTTTTGAAGTCCTTGAACTTCCGAATTAATCTGCCCACTCCCC
TGGCATATGTGGAGACGCTCCTAGAGGTTTTAGGATACAATGGCTGTTTGGTTCCAGCCATGAG
GCTGCATGCAACCTGCCTGACACTGCTCGACCTGGTCTATCTTCTGCATGAACCCATATATGAG
AGCCTGTTGAGGGCTTCAATTGAGAACTCCACTCCCAGTCAGCTGCAAGGGGAAAAGTTTACTT
CAGTGAAGGAAGACTTCATGCTGTTGGCAGTAGGAATCATTGCAGCAAGTGCTTTCATCCAAAA
CCATGAGTGTTGGAGCCAGGTTGTGGGGCATTTGCAGAGCATCACTGGTATTGCCTTGGCAAGC
ATTGCTGAGTTCTCTTATGCAATCCTGACTCACGGAGTGGGAGCCAACACTCCGGGGAGACAGC
AGTCTATTCCTCCCCACCTGGCAGCCAGAGCTCTGAAGACTGTTGCTTCCTCTAACACATGAGG
GAGGCTGAATCCACCAAATATAAACAGCCATCCGTCACTGCACTCATGCCTCCCTCTGTTTACT
TTCATACTAAGGGTACAAAAATTCCAAGTCTCTTTTGAACTGTATTTTGTATGCCAATTTCATG
CTTATTTTTCCTTTATCAGAGAGAGTTAAGGTGGACGAGCATGCCCTTTTTGTCATATCAGCCT
GAAAATGTTAAAAAGCTAGGTGGAGACAGATTAGTTGTTTCATTTTTGTTTAACAAGGTATTTA
TACTTTTAGCTTAATTTCATTAAGAGGAACATCAGGCATTGCAATCAGTATTAATCAGGGGCTC
AAATACAGACTATCTGGGTGACCTTGACTAAGCATCAAGGAGGTAGCCTTTATTTCCCCTTAAA
ATTAGTTTAACATCTCTGTTCCATTATTCAGATCTACACAAACAAGGCTTCCTCAACAGCTATC
TATTTTTACTAGAGTCTTTTTTTAAAACTAAAACTAACTCTAAAGAAGTTTCAACAGAATTTCC
ACATACCTGCATTCATTAGAACTTGATTCTCCCAGAATACAAAGTACTCTATTTTAAAGAAAAA
CCCAACAGTGCACCCCTGGGCAGTTTTCAGACTGCAGCAAATCTTTTATTACAAATAATTAAAT
CTCTCCATAATGTCTCAAACAGTATCAAACACCATTTCATATCTCTAACACAGAGCAGAGTCGG
CATTCAGTATAAGAACCAAGTGAAAAGTGTTAAATTTCAAGCATCTGATCACATCACATGGTGA
CCAGGTAAAGCTTAGATGTCATTTTCCCACATTATCCAACTGTGCATCTCAAACATATCCTCAT
CTCAGTAAAGACAAAAGTTTCTATTTCATATTGTTAAGTGCAGGAAGTTGAGAGAGATAAAAAT
CCAGTGAAAACACATCAATCTCAATTCAACTCAGTTAAAAAAAAGAAAAGCAAATTTAAATTAG
TTTTTTTCAGAGAAGAAAGGGAAAGGAGTCCATGGGGTTAAGAATCAAAACTGACCAGGGCTGG
CAACTATAGATGGCATGTTGTAGCTCTGGAAAGTATCTGTCACATGATATTTTAAAATAAAGTG
GCTTTTGTGGATTTTTTCTTTTTTGGTATTGTAAACATGTACTGTTTAATATTACC

hide sequence

RefSeq Acc Id:

XM_024450569 ⟹ XP_024306337

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	17	42,798,785 - 42,811,587 (+)	NCBI

Sequence:

show sequence

GGTTCCCGGGCACAGGGGATGGACGCGGGAGAGTTTGTTTTTCTCCTGTCTGAACAATGGTGTC
TGGAGAAATCTGTGAGCTACCAGGCTGTAGAAATCCTAGAAAGGTTTATGGTAAAACAGGCAGA
GAACATCTGCAGGCAAGCCACAATCCAGCCAAGAGATAATAAGAGAGAGTCTCAGAATTGGAGG
GCTCTGAAACAGCAGCTTGTCAACAAGTTTACTCTCCGTCTTGTGTCATGTGTTCAGCTGGCCA
GCAAACTTTCCTTCCGAAACAAAATAATCAGCAACATTACAGTCTTGAATTTCCTCCAGGCTCT
AGGCTATCTACACACTAAAGAAGAACTGCTGGAATCAGAGCTTGATGTTTTGAAGTCCTTGAAC
TTCCGAATTAATCTGCCCACTCCCCTGGCATATGTGGAGACGCTCCTAGAGGTTTTAGGATACA
ATGGCTGTTTGGTTCCAGCCATGAGGCTGCATGCAACCTGCCTGACACTGCTCGACCTGGTCTA
TCTTCTGCATGAACCCATATATGAGAGCCTGTTGAGGGCTTCAATTGAGAACTCCACTCCCAGT
CAGCTGCAAGGGGAAAAGTTTACTTCAGTGAAGGAAGACTTCATGCTGTTGGCAGTAGGAATCA
TTGCAGCAAGTGCTTTCATCCAAAACCATGAGTGTTGGAGCCAGGTATGCACCACTGAGCAGGA
CCAGCATGGTTGTGGGGCATTTGCAGAGCATCACTGGTATTGCCTTGGCAAGCATTGCTGAGTT
CTCTTATGCAATCCTGACTCACGGAGTGGGAGCCAACACTCCGGGGAGACAGCAGTCTATTCCT
CCCCACCTGGCAGCCAGAGCTCTGAAGACTGTTGCTTCCTCTAACACATGAGGGAGGCTGAATC
CACCAAATATAAACAGCCATCCGTCACTGCA

hide sequence

RefSeq Acc Id:

XM_054315022 ⟹ XP_054170997

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	17	43,655,867 - 43,668,726 (+)	NCBI

RefSeq Acc Id:

XM_054315023 ⟹ XP_054170998

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	17	43,655,878 - 43,668,726 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001317151	(Get FASTA)	NCBI Sequence Viewer
	NP_775749	(Get FASTA)	NCBI Sequence Viewer
	XP_011522613	(Get FASTA)	NCBI Sequence Viewer
	XP_024306337	(Get FASTA)	NCBI Sequence Viewer
	XP_054170997	(Get FASTA)	NCBI Sequence Viewer
	XP_054170998	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH26187	(Get FASTA)	NCBI Sequence Viewer
	BAC05060	(Get FASTA)	NCBI Sequence Viewer
	BAG63478	(Get FASTA)	NCBI Sequence Viewer
	CAH56287	(Get FASTA)	NCBI Sequence Viewer
	EAW60886	(Get FASTA)	NCBI Sequence Viewer
	EAW60887	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000465204
	ENSP00000465204.1
	ENSP00000465999.1
	ENSP00000467787.1
	ENSP00000468459.1
	ENSP00000468725
	ENSP00000468725.1
GenBank Protein	Q8N815	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_775749 ⟸ NM_173478
- Peptide Label:	isoform 1
- UniProtKB:	Q658Q6 (UniProtKB/Swiss-Prot), Q8NEP1 (UniProtKB/Swiss-Prot), Q8N815 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MDGPMRPRSASLVDFQFGVVATETIEDALLHLAQQNEQAVREASGRLGRFREPQIVEFVFLLSE QWCLEKSVSYQAVEILERFMVKQAENICRQATIQPRDNKRESQNWRALKQQLVNKFTLRLVSCV QLASKLSFRNKIISNITVLNFLQALGYLHTKEELLESELDVLKSLNFRINLPTPLAYVETLLEV LGYNGCLVPAMRLHATCLTLLDLVYLLHEPIYESLLRASIENSTPSQLQGEKFTSVKEDFMLLA VGIIAASAFIQNHECWSQVVGHLQSITGIALASIAEFSYAILTHGVGANTPGRQQSIPPHLAAR ALKTVASSNT hide sequence

RefSeq Acc Id:	XP_011522613 ⟸ XM_011524311
- Peptide Label:	isoform X2
- UniProtKB:	B4DXR6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVKQAENICRQATIQPRDNKRESQNWRALKQQLVNKFTLRLVSCVQLASKLSFRNKIISNITVL NFLQALGYLHTKEELLESELDVLKSLNFRINLPTPLAYVETLLEVLGYNGCLVPAMRLHATCLT LLDLVYLLHEPIYESLLRASIENSTPSQLQGEKFTSVKEDFMLLAVGIIAASAFIQNHECWSQV VGHLQSITGIALASIAEFSYAILTHGVGANTPGRQQSIPPHLAARALKTVASSNT hide sequence

RefSeq Acc Id:

XP_024306337 ⟸ XM_024450569

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDAGEFVFLLSEQWCLEKSVSYQAVEILERFMVKQAENICRQATIQPRDNKRESQNWRALKQQL
VNKFTLRLVSCVQLASKLSFRNKIISNITVLNFLQALGYLHTKEELLESELDVLKSLNFRINLP
TPLAYVETLLEVLGYNGCLVPAMRLHATCLTLLDLVYLLHEPIYESLLRASIENSTPSQLQGEK
FTSVKEDFMLLAVGIIAASAFIQNHECWSQVCTTEQDQHGCGAFAEHHWYCLGKHC

hide sequence

RefSeq Acc Id:	NP_001317151 ⟸ NM_001330222
- Peptide Label:	isoform 2
- UniProtKB:	B4DXR6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVKQAENICRQATIQPRDNKRESQNWRALKQQLVNKFTLRLVSCVQLASKLSFRNKIISNITVL NFLQALGYLHTKEELLESELDVLKSLNFRINLPTPLAYVETLLEVLGYNGCLVPAMRLHATCLT LLDLVYLLHEPIYESLLRASIENSTPSQLQGEKFTSVKEDFMLLAVGIIAASAFIQNHECWSQV VGHLQSITGIALASIAEFSYAILTHGVGANTPGRQQSIPPHLAARALKTVASSNT hide sequence

RefSeq Acc Id:

ENSP00000465999 ⟸ ENST00000585355

RefSeq Acc Id:

ENSP00000467787 ⟸ ENST00000586652

RefSeq Acc Id:

ENSP00000465204 ⟸ ENST00000588408

RefSeq Acc Id:

ENSP00000468725 ⟸ ENST00000588527

RefSeq Acc Id:

ENSP00000468459 ⟸ ENST00000592166

RefSeq Acc Id:	XP_054170997 ⟸ XM_054315022
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_054170998 ⟸ XM_054315023
- Peptide Label:	isoform X2
- UniProtKB:	B4DXR6 (UniProtKB/TrEMBL)

Protein Domains

Cyclin N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8N815-F1-model_v2	AlphaFold	Q8N815	1-330	view protein structure

Promoters

RGD ID:

6793882

Promoter ID:

HG_KWN:26223

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, CD4+TCell_12Hour, HeLa_S3, K562, Lymphoblastoid, NB4

Transcripts:

ENST00000328434, NM_173478

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	17	38,203,311 - 38,204,262 (+)	MPROMDB

RGD ID:

7235137

Promoter ID:

EPDNEW_H23314

Type:

initiation region

Name:

CNTD1_1

Description:

cyclin N-terminal domain containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H23315

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	17	42,798,792 - 42,798,852	EPDNEW

RGD ID:

7235141

Promoter ID:

EPDNEW_H23315

Type:

single initiation site

Name:

CNTD1_2

Description:

cyclin N-terminal domain containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H23314

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	17	42,805,394 - 42,805,454	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:26847	AgrOrtholog
COSMIC	CNTD1	COSMIC
Ensembl Genes	ENSG00000176563	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENST00000585355.5	UniProtKB/TrEMBL
	ENST00000586652.1	UniProtKB/TrEMBL
	ENST00000588408	ENTREZGENE
	ENST00000588408.6	UniProtKB/Swiss-Prot
	ENST00000588527	ENTREZGENE
	ENST00000588527.5	UniProtKB/TrEMBL
	ENST00000592166.5	UniProtKB/TrEMBL
Gene3D-CATH	Cyclin-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx	ENSG00000176563	GTEx
HGNC ID	HGNC:26847	ENTREZGENE
Human Proteome Map	CNTD1	Human Proteome Map
InterPro	Cyclin-like_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyclin_N	UniProtKB/Swiss-Prot
KEGG Report	hsa:124817	UniProtKB/Swiss-Prot
NCBI Gene	124817	ENTREZGENE
OMIM	618166	OMIM
PANTHER	CYCLIN N-TERMINAL DOMAIN-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR21615	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Cyclin_N	UniProtKB/Swiss-Prot
PharmGKB	PA142672089	PharmGKB
Superfamily-SCOP	SSF47954	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	B4DXR6	ENTREZGENE, UniProtKB/TrEMBL
	CNTD1_HUMAN	UniProtKB/Swiss-Prot
	K7ELB6_HUMAN	UniProtKB/TrEMBL
	K7EQE2_HUMAN	UniProtKB/TrEMBL
	K7ERX8_HUMAN	UniProtKB/TrEMBL
	Q658Q6	ENTREZGENE
	Q8N815	ENTREZGENE
	Q8NEP1	ENTREZGENE
UniProt Secondary	Q658Q6	UniProtKB/Swiss-Prot
	Q8NEP1	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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