USF3 (upstream transcription factor family member 3) - Rat Genome Database

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Gene: USF3 (upstream transcription factor family member 3) Homo sapiens
Analyze
Symbol: USF3
Name: upstream transcription factor family member 3
RGD ID: 1602969
HGNC Page HGNC:30494
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of epithelial to mesenchymal transition and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: basic helix-loop-helix domain-containing protein KIAA2018; basic helix-loop-helix domain-containing protein USF3; DKFZp781O0144; hypothetical protein LOC205717; K06A9.1-like; KIAA2018; upstream transcription factor 3
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383113,648,385 - 113,696,642 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3113,648,385 - 113,696,646 (-)EnsemblGRCh38hg38GRCh38
GRCh373113,367,232 - 113,415,489 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363114,849,922 - 114,898,183 (-)NCBINCBI36Build 36hg18NCBI36
Celera3111,775,805 - 111,824,038 (-)NCBICelera
Cytogenetic Map3q13.2NCBI
HuRef3110,742,162 - 110,790,466 (-)NCBIHuRef
CHM1_13113,330,573 - 113,378,838 (-)NCBICHM1_1
T2T-CHM13v2.03116,369,551 - 116,417,840 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Abnormal cerebellum morphology  (IAGP)
Abnormal penis morphology  (IAGP)
Abnormality of the kidney  (IAGP)
Abnormality of the thyroid gland  (IAGP)
Abnormality of the uterus  (IAGP)
Adenoma sebaceum  (IAGP)
Ataxia  (IAGP)
Autism  (IAGP)
Bone cyst  (IAGP)
Brachydactyly  (IAGP)
Breast carcinoma  (IAGP)
Cataract  (IAGP)
Cavernous hemangioma  (IAGP)
Cellular immunodeficiency  (IAGP)
Cognitive impairment  (IAGP)
Colorectal polyposis  (IAGP)
Conjunctival hamartoma  (IAGP)
Endometrial carcinoma  (IAGP)
Enlarged polycystic ovaries  (IAGP)
Failure to thrive  (IAGP)
Fibroma  (IAGP)
Follicular thyroid carcinoma  (IAGP)
Furrowed tongue  (IAGP)
Generalized hyperkeratosis  (IAGP)
Global developmental delay  (IAGP)
Goiter  (IAGP)
Gynecomastia  (IAGP)
Hamartomatous polyposis  (IAGP)
Hearing impairment  (IAGP)
Hepatocellular carcinoma  (IAGP)
High palate  (IAGP)
Hypopigmented skin patches  (IAGP)
Increased intracranial pressure  (IAGP)
Intellectual disability  (IAGP)
Kyphosis  (IAGP)
Lipoma  (IAGP)
Macrocephaly  (IAGP)
Macroglossia  (IAGP)
Macule  (IAGP)
Melanocytic nevus  (IAGP)
Melanoma  (IAGP)
Meningioma  (IAGP)
Mucosal telangiectasiae  (IAGP)
Multiple cafe-au-lait spots  (IAGP)
Myopia  (IAGP)
Neoplasm  (IAGP)
Neoplasm of the central nervous system  (IAGP)
Neoplasm of the skin  (IAGP)
Neoplasm of the thyroid gland  (IAGP)
Palmoplantar keratoderma  (IAGP)
Papilloma  (IAGP)
Papule  (IAGP)
Pectus excavatum  (IAGP)
Renal cell carcinoma  (IAGP)
Scoliosis  (IAGP)
Seizure  (IAGP)
Short stature  (IAGP)
Subcutaneous nodule  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11181995   PMID:19274049   PMID:20936779   PMID:21873635   PMID:22504420   PMID:23535732   PMID:28011713   PMID:28611215   PMID:29507755   PMID:29845934   PMID:30021884   PMID:31586073  
PMID:31883164   PMID:33058301   PMID:33961781   PMID:35044719  


Genomics

Comparative Map Data
USF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383113,648,385 - 113,696,642 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3113,648,385 - 113,696,646 (-)EnsemblGRCh38hg38GRCh38
GRCh373113,367,232 - 113,415,489 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363114,849,922 - 114,898,183 (-)NCBINCBI36Build 36hg18NCBI36
Celera3111,775,805 - 111,824,038 (-)NCBICelera
Cytogenetic Map3q13.2NCBI
HuRef3110,742,162 - 110,790,466 (-)NCBIHuRef
CHM1_13113,330,573 - 113,378,838 (-)NCBICHM1_1
T2T-CHM13v2.03116,369,551 - 116,417,840 (-)NCBIT2T-CHM13v2.0
Usf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391643,993,566 - 44,047,828 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1643,993,609 - 44,047,828 (+)EnsemblGRCm39 Ensembl
GRCm381644,173,236 - 44,227,465 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1644,173,246 - 44,227,465 (+)EnsemblGRCm38mm10GRCm38
MGSCv371644,173,510 - 44,227,578 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361644,092,729 - 44,143,369 (+)NCBIMGSCv36mm8
Celera1644,556,548 - 44,585,117 (+)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1628.51NCBI
Usf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81169,976,658 - 70,035,809 (-)NCBIGRCr8
mRatBN7.21156,470,738 - 56,529,736 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1156,476,122 - 56,529,884 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01161,427,140 - 61,499,668 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1161,432,064 - 61,499,557 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01165,536,227 - 65,606,562 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41158,041,160 - 58,078,821 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1156,027,174 - 56,083,028 (-)NCBICelera
Cytogenetic Map11q21NCBI
Usf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542713,768,047 - 13,811,391 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542713,766,188 - 13,811,253 (-)NCBIChiLan1.0ChiLan1.0
USF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22111,612,823 - 111,692,338 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13111,617,602 - 111,697,009 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03110,759,044 - 110,838,334 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13117,711,672 - 117,759,891 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3117,713,127 - 117,738,346 (-)Ensemblpanpan1.1panPan2
USF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13317,945,852 - 17,994,348 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3317,948,228 - 17,968,319 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3318,046,346 - 18,096,387 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03318,188,340 - 18,238,498 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3318,193,932 - 18,238,762 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13317,992,359 - 18,042,284 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03318,039,484 - 18,089,636 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03318,590,595 - 18,640,751 (-)NCBIUU_Cfam_GSD_1.0
Usf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602136,321,880 - 136,347,202 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365361,180,189 - 1,200,067 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365361,174,321 - 1,200,015 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13146,230,180 - 146,282,335 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113146,230,165 - 146,286,862 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213155,815,433 - 155,868,540 (+)NCBISscrofa10.2Sscrofa10.2susScr3
USF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12267,159,467 - 67,208,368 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2267,159,657 - 67,206,661 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604199,262,694 - 99,306,311 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473134,854,915 - 34,893,357 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473134,822,928 - 34,899,166 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in USF3
94 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 3q13.2-13.31(chr3:112168829-117393356)x1 copy number loss See cases [RCV000050766] Chr3:112168829..117393356 [GRCh38]
Chr3:111887676..117112203 [GRCh37]
Chr3:113370366..118594893 [NCBI36]
Chr3:3q13.2-13.31		 pathogenic
GRCh38/hg38 3q11.1-21.1(chr3:93886671-123216683)x1 copy number loss See cases [RCV000051543] Chr3:93886671..123216683 [GRCh38]
Chr3:93605515..122935530 [GRCh37]
Chr3:95088205..124418220 [NCBI36]
Chr3:3q11.1-21.1		 pathogenic
GRCh38/hg38 3q13.13-13.31(chr3:108242572-116169331)x1 copy number loss See cases [RCV000051544] Chr3:108242572..116169331 [GRCh38]
Chr3:107961419..115888178 [GRCh37]
Chr3:109444109..117370868 [NCBI36]
Chr3:3q13.13-13.31		 pathogenic
GRCh38/hg38 3q13.2-13.31(chr3:112479482-115774102)x1 copy number loss See cases [RCV000051545] Chr3:112479482..115774102 [GRCh38]
Chr3:112198329..115492949 [GRCh37]
Chr3:113681019..116975639 [NCBI36]
Chr3:3q13.2-13.31		 pathogenic
GRCh38/hg38 3q13.11-13.31(chr3:104621220-116093884)x3 copy number gain See cases [RCV000051722] Chr3:104621220..116093884 [GRCh38]
Chr3:104340064..115812731 [GRCh37]
Chr3:105822754..117295421 [NCBI36]
Chr3:3q13.11-13.31		 pathogenic
NM_001009899.3(KIAA2018):c.1727T>C (p.Val576Ala) single nucleotide variant Malignant melanoma [RCV000065778] Chr3:113659955 [GRCh38]
Chr3:113378802 [GRCh37]
Chr3:114861492 [NCBI36]
Chr3:3q13.2		 not provided
NM_001009899.3(KIAA2018):c.6575C>T (p.Ser2192Phe) single nucleotide variant Malignant melanoma [RCV000060665] Chr3:113655107 [GRCh38]
Chr3:113373954 [GRCh37]
Chr3:114856644 [NCBI36]
Chr3:3q13.2		 not provided
NM_001009899.3(KIAA2018):c.236A>T (p.Asn79Ile) single nucleotide variant Malignant melanoma [RCV000060666] Chr3:113664333 [GRCh38]
Chr3:113383180 [GRCh37]
Chr3:114865870 [NCBI36]
Chr3:3q13.2		 not provided
GRCh38/hg38 3q11.1-13.31(chr3:93819623-116887056)x1 copy number loss See cases [RCV000135320] Chr3:93819623..116887056 [GRCh38]
Chr3:93538467..116605903 [GRCh37]
Chr3:95021157..118088593 [NCBI36]
Chr3:3q11.1-13.31		 pathogenic
GRCh38/hg38 3q13.11-29(chr3:103426882-198110178)x3 copy number gain See cases [RCV000134948] Chr3:103426882..198110178 [GRCh38]
Chr3:103145726..197837049 [GRCh37]
Chr3:104628416..199321446 [NCBI36]
Chr3:3q13.11-29		 pathogenic
GRCh38/hg38 3q13.2-13.31(chr3:112465096-115774102)x1 copy number loss See cases [RCV000135592] Chr3:112465096..115774102 [GRCh38]
Chr3:112183943..115492949 [GRCh37]
Chr3:113666633..116975639 [NCBI36]
Chr3:3q13.2-13.31		 likely pathogenic
GRCh38/hg38 3q11.2-13.31(chr3:97795369-115663349)x1 copy number loss See cases [RCV000138186] Chr3:97795369..115663349 [GRCh38]
Chr3:97514213..115382196 [GRCh37]
Chr3:98996903..116864886 [NCBI36]
Chr3:3q11.2-13.31		 pathogenic|uncertain significance
GRCh38/hg38 3q13.2-13.31(chr3:112465094-115774111)x1 copy number loss See cases [RCV000138434] Chr3:112465094..115774111 [GRCh38]
Chr3:112183941..115492958 [GRCh37]
Chr3:113666631..116975648 [NCBI36]
Chr3:3q13.2-13.31		 pathogenic
GRCh38/hg38 3q13.2-21.3(chr3:112620977-128734134)x1 copy number loss See cases [RCV000139033] Chr3:112620977..128734134 [GRCh38]
Chr3:112339824..128452977 [GRCh37]
Chr3:113822514..129935667 [NCBI36]
Chr3:3q13.2-21.3		 pathogenic
GRCh38/hg38 3q11.1-24(chr3:93800620-145695381)x3 copy number gain See cases [RCV000142340] Chr3:93800620..145695381 [GRCh38]
Chr3:93519464..145413168 [GRCh37]
Chr3:95002154..146895858 [NCBI36]
Chr3:3q11.1-24		 pathogenic
NM_001009899.4(USF3):c.4383GCA[11] (p.Gln1478del) microsatellite not specified [RCV000202932] Chr3:113657264..113657266 [GRCh38]
Chr3:113376111..113376113 [GRCh37]
Chr3:3q13.2		 pathogenic|likely benign
GRCh38/hg38 3q13.2-13.31(chr3:112425234-115795585)x1 copy number loss See cases [RCV000142219] Chr3:112425234..115795585 [GRCh38]
Chr3:112144081..115514432 [GRCh37]
Chr3:113626771..116997122 [NCBI36]
Chr3:3q13.2-13.31		 pathogenic
GRCh38/hg38 3q13.2-13.33(chr3:112520553-120031022)x1 copy number loss See cases [RCV000142725] Chr3:112520553..120031022 [GRCh38]
Chr3:112239400..119749869 [GRCh37]
Chr3:113722090..121232559 [NCBI36]
Chr3:3q13.2-13.33		 pathogenic
GRCh37/hg19 3q13.2-13.31(chr3:112144081-115514432)x1 copy number loss See cases [RCV000446223] Chr3:112144081..115514432 [GRCh37]
Chr3:3q13.2-13.31		 pathogenic
GRCh37/hg19 3q13.11-13.32(chr3:105094834-117441953)x1 copy number loss See cases [RCV000448410] Chr3:105094834..117441953 [GRCh37]
Chr3:3q13.11-13.32		 pathogenic
GRCh37/hg19 3q13.2-13.31(chr3:112590339-116461450)x1 copy number loss See cases [RCV000511086] Chr3:112590339..116461450 [GRCh37]
Chr3:3q13.2-13.31		 pathogenic
NM_001009899.4(USF3):c.4529A>G (p.His1510Arg) single nucleotide variant Inborn genetic diseases [RCV003278068] Chr3:113657153 [GRCh38]
Chr3:113376000 [GRCh37]
Chr3:3q13.2		 uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
NM_001009899.4(USF3):c.1715C>A (p.Ser572Tyr) single nucleotide variant Inborn genetic diseases [RCV003288763] Chr3:113659967 [GRCh38]
Chr3:113378814 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.985G>A (p.Gly329Ser) single nucleotide variant Inborn genetic diseases [RCV003281865] Chr3:113660697 [GRCh38]
Chr3:113379544 [GRCh37]
Chr3:3q13.2		 likely benign
NM_001009899.4(USF3):c.3787A>G (p.Thr1263Ala) single nucleotide variant Inborn genetic diseases [RCV003262105] Chr3:113657895 [GRCh38]
Chr3:113376742 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.6076C>T (p.Arg2026Cys) single nucleotide variant Inborn genetic diseases [RCV003261022] Chr3:113655606 [GRCh38]
Chr3:113374453 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.746T>G (p.Leu249Arg) single nucleotide variant Inborn genetic diseases [RCV003255506] Chr3:113660936 [GRCh38]
Chr3:113379783 [GRCh37]
Chr3:3q13.2		 uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3q13.13-13.31(chr3:110645295-115103586)x1 copy number loss not provided [RCV000682294] Chr3:110645295..115103586 [GRCh37]
Chr3:3q13.13-13.31		 pathogenic
GRCh37/hg19 3q13.2-13.31(chr3:111894832-116930109)x1 copy number loss not provided [RCV000682296] Chr3:111894832..116930109 [GRCh37]
Chr3:3q13.2-13.31		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
NM_001009899.4(USF3):c.3268A>G (p.Thr1090Ala) single nucleotide variant Inborn genetic diseases [RCV003243906] Chr3:113658414 [GRCh38]
Chr3:113377261 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.*3781C>A single nucleotide variant not provided [RCV001693461] Chr3:113651163 [GRCh38]
Chr3:113370010 [GRCh37]
Chr3:3q13.2		 benign
GRCh37/hg19 3q13.2-13.31(chr3:112183943-115492949)x1 copy number loss not provided [RCV000856645] Chr3:112183943..115492949 [GRCh37]
Chr3:3q13.2-13.31		 pathogenic
NM_001009899.4(USF3):c.5167C>T (p.His1723Tyr) single nucleotide variant Inborn genetic diseases [RCV003272254] Chr3:113656515 [GRCh38]
Chr3:113375362 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.772G>T (p.Ala258Ser) single nucleotide variant Inborn genetic diseases [RCV003290354] Chr3:113660910 [GRCh38]
Chr3:113379757 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.3047dup (p.Asn1016fs) duplication CIC-DUX Sarcoma [RCV000993820] Chr3:113658634..113658635 [GRCh38]
Chr3:113377481..113377482 [GRCh37]
Chr3:3q13.2		 pathogenic|not provided
NC_000003.11:g.(?_113010404)_(114099634_?)del deletion not provided [RCV003105596] Chr3:113010404..114099634 [GRCh37]
Chr3:3q13.2-13.31		 uncertain significance
NM_001009899.4(USF3):c.4646G>A (p.Arg1549Gln) single nucleotide variant Inborn genetic diseases [RCV003251050] Chr3:113657036 [GRCh38]
Chr3:113375883 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.4383GCA[9] (p.Gln1476_Gln1478del) microsatellite not specified [RCV001528953] Chr3:113657264..113657272 [GRCh38]
Chr3:113376111..113376119 [GRCh37]
Chr3:3q13.2		 pathogenic|benign
GRCh37/hg19 3q13.2-13.32(chr3:113233952-118525556)x1 copy number loss See cases [RCV001194596] Chr3:113233952..118525556 [GRCh37]
Chr3:3q13.2-13.32		 pathogenic
GRCh37/hg19 3q13.12-13.31(chr3:106598767-115704696) copy number loss Chromosome 3q13.31 deletion syndrome [RCV002280741] Chr3:106598767..115704696 [GRCh37]
Chr3:3q13.12-13.31		 pathogenic
GRCh37/hg19 3q13.2-13.31(chr3:112135341-115509260)x3 copy number gain not provided [RCV001259226] Chr3:112135341..115509260 [GRCh37]
Chr3:3q13.2-13.31		 pathogenic
GRCh37/hg19 3q13.2-13.31(chr3:112144081-115514432) copy number loss not specified [RCV002053367] Chr3:112144081..115514432 [GRCh37]
Chr3:3q13.2-13.31		 pathogenic
NM_001009899.4(USF3):c.4383GCA[14] (p.Gln1478_Ala1479insGlnGln) microsatellite not provided [RCV002263331] Chr3:113657263..113657264 [GRCh38]
Chr3:113376110..113376111 [GRCh37]
Chr3:3q13.2		 pathogenic|benign
NM_001009899.4(USF3):c.787T>C (p.Ser263Pro) single nucleotide variant Inborn genetic diseases [RCV003304738] Chr3:113660895 [GRCh38]
Chr3:113379742 [GRCh37]
Chr3:3q13.2		 likely benign
GRCh37/hg19 3q13.12-13.31(chr3:107059705-115005256)x1 copy number loss not provided [RCV002472579] Chr3:107059705..115005256 [GRCh37]
Chr3:3q13.12-13.31		 pathogenic
NM_001009899.4(USF3):c.4383GCA[13] (p.Gln1478_Ala1479insGln) microsatellite Hepatocellular carcinoma [RCV002302706] Chr3:113657263..113657264 [GRCh38]
Chr3:113376110..113376111 [GRCh37]
Chr3:3q13.2		 pathogenic
NM_001009899.4(USF3):c.4383GCA[10] (p.Gln1477_Gln1478del) microsatellite Hepatocellular carcinoma [RCV002302707] Chr3:113657264..113657269 [GRCh38]
Chr3:113376111..113376116 [GRCh37]
Chr3:3q13.2		 pathogenic
NM_001009899.4(USF3):c.3047del (p.Asn1016fs) deletion Hepatocellular carcinoma [RCV002302708] Chr3:113658635 [GRCh38]
Chr3:113377482 [GRCh37]
Chr3:3q13.2		 pathogenic
NM_001009899.4(USF3):c.4383GCA[15] (p.Gln1478_Ala1479insGlnGlnGln) microsatellite Hepatocellular carcinoma [RCV002302717] Chr3:113657263..113657264 [GRCh38]
Chr3:113376110..113376111 [GRCh37]
Chr3:3q13.2		 pathogenic
NM_001009899.4(USF3):c.4675C>A (p.His1559Asn) single nucleotide variant Inborn genetic diseases [RCV002990406] Chr3:113657007 [GRCh38]
Chr3:113375854 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.6101G>A (p.Arg2034Lys) single nucleotide variant Inborn genetic diseases [RCV002687187] Chr3:113655581 [GRCh38]
Chr3:113374428 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.6525G>T (p.Met2175Ile) single nucleotide variant Inborn genetic diseases [RCV002688176] Chr3:113655157 [GRCh38]
Chr3:113374004 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.4093G>T (p.Asp1365Tyr) single nucleotide variant Inborn genetic diseases [RCV002902507] Chr3:113657589 [GRCh38]
Chr3:113376436 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.3839G>A (p.Ser1280Asn) single nucleotide variant Inborn genetic diseases [RCV002993376] Chr3:113657843 [GRCh38]
Chr3:113376690 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.2977A>G (p.Met993Val) single nucleotide variant Inborn genetic diseases [RCV002865011] Chr3:113658705 [GRCh38]
Chr3:113377552 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.3845A>G (p.Tyr1282Cys) single nucleotide variant Inborn genetic diseases [RCV002682720] Chr3:113657837 [GRCh38]
Chr3:113376684 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.2971G>C (p.Asp991His) single nucleotide variant Inborn genetic diseases [RCV002772637] Chr3:113658711 [GRCh38]
Chr3:113377558 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.3250G>A (p.Ala1084Thr) single nucleotide variant Inborn genetic diseases [RCV002777083] Chr3:113658432 [GRCh38]
Chr3:113377279 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.5419C>T (p.Pro1807Ser) single nucleotide variant Inborn genetic diseases [RCV002682114] Chr3:113656263 [GRCh38]
Chr3:113375110 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.6044C>T (p.Pro2015Leu) single nucleotide variant Inborn genetic diseases [RCV002683393] Chr3:113655638 [GRCh38]
Chr3:113374485 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.2048C>T (p.Thr683Ile) single nucleotide variant Inborn genetic diseases [RCV002816884] Chr3:113659634 [GRCh38]
Chr3:113378481 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.3976G>T (p.Asp1326Tyr) single nucleotide variant Inborn genetic diseases [RCV002840114] Chr3:113657706 [GRCh38]
Chr3:113376553 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.50A>G (p.Lys17Arg) single nucleotide variant Inborn genetic diseases [RCV002993162] Chr3:113673374 [GRCh38]
Chr3:113392221 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.4798A>G (p.Ile1600Val) single nucleotide variant Inborn genetic diseases [RCV002990353] Chr3:113656884 [GRCh38]
Chr3:113375731 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.6326C>T (p.Ser2109Phe) single nucleotide variant Inborn genetic diseases [RCV002822163] Chr3:113655356 [GRCh38]
Chr3:113374203 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.5902C>T (p.Arg1968Cys) single nucleotide variant Inborn genetic diseases [RCV002738985]|not provided [RCV003435967] Chr3:113655780 [GRCh38]
Chr3:113374627 [GRCh37]
Chr3:3q13.2		 likely benign|uncertain significance
NM_001009899.4(USF3):c.2377A>G (p.Lys793Glu) single nucleotide variant Inborn genetic diseases [RCV002844892] Chr3:113659305 [GRCh38]
Chr3:113378152 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.6638T>C (p.Ile2213Thr) single nucleotide variant Inborn genetic diseases [RCV002704532] Chr3:113655044 [GRCh38]
Chr3:113373891 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.1405A>G (p.Asn469Asp) single nucleotide variant Inborn genetic diseases [RCV002757406] Chr3:113660277 [GRCh38]
Chr3:113379124 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.3322A>G (p.Thr1108Ala) single nucleotide variant Inborn genetic diseases [RCV002950836] Chr3:113658360 [GRCh38]
Chr3:113377207 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.1939A>C (p.Asn647His) single nucleotide variant Inborn genetic diseases [RCV003000917] Chr3:113659743 [GRCh38]
Chr3:113378590 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.2710A>G (p.Met904Val) single nucleotide variant Inborn genetic diseases [RCV002798115] Chr3:113658972 [GRCh38]
Chr3:113377819 [GRCh37]
Chr3:3q13.2		 likely benign
NM_001009899.4(USF3):c.4257G>T (p.Gln1419His) single nucleotide variant Inborn genetic diseases [RCV002910626] Chr3:113657425 [GRCh38]
Chr3:113376272 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.5762A>G (p.Asn1921Ser) single nucleotide variant Inborn genetic diseases [RCV002925490] Chr3:113655920 [GRCh38]
Chr3:113374767 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.6390T>G (p.Phe2130Leu) single nucleotide variant Inborn genetic diseases [RCV002950749] Chr3:113655292 [GRCh38]
Chr3:113374139 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.457G>A (p.Gly153Arg) single nucleotide variant Inborn genetic diseases [RCV002952286] Chr3:113661225 [GRCh38]
Chr3:113380072 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.277C>T (p.Arg93Trp) single nucleotide variant Inborn genetic diseases [RCV002745122] Chr3:113661405 [GRCh38]
Chr3:113380252 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.3773C>T (p.Ala1258Val) single nucleotide variant Inborn genetic diseases [RCV002805174] Chr3:113657909 [GRCh38]
Chr3:113376756 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.3611C>G (p.Ala1204Gly) single nucleotide variant Inborn genetic diseases [RCV002702172] Chr3:113658071 [GRCh38]
Chr3:113376918 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.1919C>T (p.Pro640Leu) single nucleotide variant Inborn genetic diseases [RCV002767209] Chr3:113659763 [GRCh38]
Chr3:113378610 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.2662A>G (p.Lys888Glu) single nucleotide variant Inborn genetic diseases [RCV002986427] Chr3:113659020 [GRCh38]
Chr3:113377867 [GRCh37]
Chr3:3q13.2		 likely benign
NM_001009899.4(USF3):c.3552T>A (p.Ser1184Arg) single nucleotide variant Inborn genetic diseases [RCV002698338] Chr3:113658130 [GRCh38]
Chr3:113376977 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.3208G>A (p.Asp1070Asn) single nucleotide variant Inborn genetic diseases [RCV002984104] Chr3:113658474 [GRCh38]
Chr3:113377321 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.6120C>A (p.Phe2040Leu) single nucleotide variant Inborn genetic diseases [RCV002743827] Chr3:113655562 [GRCh38]
Chr3:113374409 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.5597A>G (p.His1866Arg) single nucleotide variant Inborn genetic diseases [RCV002802985] Chr3:113656085 [GRCh38]
Chr3:113374932 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.6358A>G (p.Thr2120Ala) single nucleotide variant Inborn genetic diseases [RCV002892169] Chr3:113655324 [GRCh38]
Chr3:113374171 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.5279T>G (p.Ile1760Arg) single nucleotide variant Inborn genetic diseases [RCV002892136] Chr3:113656403 [GRCh38]
Chr3:113375250 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.3287G>A (p.Arg1096His) single nucleotide variant Inborn genetic diseases [RCV002986586] Chr3:113658395 [GRCh38]
Chr3:113377242 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.5249T>C (p.Phe1750Ser) single nucleotide variant Inborn genetic diseases [RCV002696953] Chr3:113656433 [GRCh38]
Chr3:113375280 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.6155C>T (p.Ser2052Leu) single nucleotide variant Inborn genetic diseases [RCV002699744] Chr3:113655527 [GRCh38]
Chr3:113374374 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.314G>A (p.Arg105Gln) single nucleotide variant Inborn genetic diseases [RCV002708542] Chr3:113661368 [GRCh38]
Chr3:113380215 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.4250A>G (p.Glu1417Gly) single nucleotide variant Inborn genetic diseases [RCV002809502] Chr3:113657432 [GRCh38]
Chr3:113376279 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.5272A>G (p.Asn1758Asp) single nucleotide variant Inborn genetic diseases [RCV002652062] Chr3:113656410 [GRCh38]
Chr3:113375257 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.3605T>C (p.Ile1202Thr) single nucleotide variant Inborn genetic diseases [RCV002717509] Chr3:113658077 [GRCh38]
Chr3:113376924 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.1807C>G (p.Arg603Gly) single nucleotide variant Inborn genetic diseases [RCV002769028] Chr3:113659875 [GRCh38]
Chr3:113378722 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.3377T>C (p.Phe1126Ser) single nucleotide variant Inborn genetic diseases [RCV002832619] Chr3:113658305 [GRCh38]
Chr3:113377152 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.6179C>T (p.Ser2060Leu) single nucleotide variant Inborn genetic diseases [RCV002809451] Chr3:113655503 [GRCh38]
Chr3:113374350 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.4370A>T (p.His1457Leu) single nucleotide variant Inborn genetic diseases [RCV002963485] Chr3:113657312 [GRCh38]
Chr3:113376159 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.2872G>T (p.Val958Phe) single nucleotide variant Inborn genetic diseases [RCV002652896] Chr3:113658810 [GRCh38]
Chr3:113377657 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.2294G>A (p.Ser765Asn) single nucleotide variant Inborn genetic diseases [RCV002724397] Chr3:113659388 [GRCh38]
Chr3:113378235 [GRCh37]
Chr3:3q13.2		 likely benign
NM_001009899.4(USF3):c.731G>A (p.Ser244Asn) single nucleotide variant Inborn genetic diseases [RCV002656050] Chr3:113660951 [GRCh38]
Chr3:113379798 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.3598G>C (p.Gly1200Arg) single nucleotide variant Inborn genetic diseases [RCV002656294] Chr3:113658084 [GRCh38]
Chr3:113376931 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.6400A>G (p.Met2134Val) single nucleotide variant Inborn genetic diseases [RCV003256499] Chr3:113655282 [GRCh38]
Chr3:113374129 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.1257C>G (p.Ser419Arg) single nucleotide variant Inborn genetic diseases [RCV003203969] Chr3:113660425 [GRCh38]
Chr3:113379272 [GRCh37]
Chr3:3q13.2		 uncertain significance
GRCh37/hg19 3q13.13-13.31(chr3:110966195-115843176)x1 copy number loss Chromosome 3q13.31 deletion syndrome [RCV003222552] Chr3:110966195..115843176 [GRCh37]
Chr3:3q13.13-13.31		 pathogenic
NM_001009899.4(USF3):c.5363G>A (p.Arg1788His) single nucleotide variant Inborn genetic diseases [RCV003179385] Chr3:113656319 [GRCh38]
Chr3:113375166 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.5972G>A (p.Arg1991His) single nucleotide variant Inborn genetic diseases [RCV003175336] Chr3:113655710 [GRCh38]
Chr3:113374557 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.3569A>G (p.Glu1190Gly) single nucleotide variant Inborn genetic diseases [RCV003211266] Chr3:113658113 [GRCh38]
Chr3:113376960 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.3118G>T (p.Asp1040Tyr) single nucleotide variant Inborn genetic diseases [RCV003196658]|not provided [RCV003456575] Chr3:113658564 [GRCh38]
Chr3:113377411 [GRCh37]
Chr3:3q13.2		 likely benign|uncertain significance
NM_001009899.4(USF3):c.1172G>A (p.Gly391Glu) single nucleotide variant Inborn genetic diseases [RCV003196762] Chr3:113660510 [GRCh38]
Chr3:113379357 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.3344A>G (p.Asn1115Ser) single nucleotide variant Inborn genetic diseases [RCV003283606] Chr3:113658338 [GRCh38]
Chr3:113377185 [GRCh37]
Chr3:3q13.2		 likely benign
NM_001009899.4(USF3):c.294A>C (p.Glu98Asp) single nucleotide variant Inborn genetic diseases [RCV003286075] Chr3:113661388 [GRCh38]
Chr3:113380235 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.1202C>T (p.Ser401Phe) single nucleotide variant Inborn genetic diseases [RCV003285165] Chr3:113660480 [GRCh38]
Chr3:113379327 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.5558C>T (p.Ala1853Val) single nucleotide variant Inborn genetic diseases [RCV003263827] Chr3:113656124 [GRCh38]
Chr3:113374971 [GRCh37]
Chr3:3q13.2		 uncertain significance
GRCh38/hg38 3q11.1-21.2(chr3:93979547-124774010)x1 copy number loss Chromosome 3q13.31 deletion syndrome [RCV003327614] Chr3:93979547..124774010 [GRCh38]
Chr3:3q11.1-21.2		 pathogenic
NM_001009899.4(USF3):c.4327C>G (p.Gln1443Glu) single nucleotide variant Inborn genetic diseases [RCV003342056] Chr3:113657355 [GRCh38]
Chr3:113376202 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.2620T>A (p.Ser874Thr) single nucleotide variant Inborn genetic diseases [RCV003345445] Chr3:113659062 [GRCh38]
Chr3:113377909 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.926C>T (p.Ala309Val) single nucleotide variant Inborn genetic diseases [RCV003366218] Chr3:113660756 [GRCh38]
Chr3:113379603 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.4465T>C (p.Tyr1489His) single nucleotide variant Inborn genetic diseases [RCV003351402] Chr3:113657217 [GRCh38]
Chr3:113376064 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.5303G>A (p.Arg1768Gln) single nucleotide variant Inborn genetic diseases [RCV003353709] Chr3:113656379 [GRCh38]
Chr3:113375226 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.4846G>C (p.Val1616Leu) single nucleotide variant Inborn genetic diseases [RCV003381926] Chr3:113656836 [GRCh38]
Chr3:113375683 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.5098A>G (p.Met1700Val) single nucleotide variant Inborn genetic diseases [RCV003367482] Chr3:113656584 [GRCh38]
Chr3:113375431 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.622C>T (p.Pro208Ser) single nucleotide variant Inborn genetic diseases [RCV003351004] Chr3:113661060 [GRCh38]
Chr3:113379907 [GRCh37]
Chr3:3q13.2		 uncertain significance
NM_001009899.4(USF3):c.2210C>T (p.Ser737Phe) single nucleotide variant Inborn genetic diseases [RCV003378083] Chr3:113659472 [GRCh38]
Chr3:113378319 [GRCh37]
Chr3:3q13.2		 uncertain significance
GRCh37/hg19 3q13.13-13.31(chr3:110398276-113879363)x1 copy number loss not provided [RCV003485398] Chr3:110398276..113879363 [GRCh37]
Chr3:3q13.13-13.31		 uncertain significance
NM_001009899.4(USF3):c.3252C>T (p.Ala1084=) single nucleotide variant not provided [RCV003434762] Chr3:113658430 [GRCh38]
Chr3:113377277 [GRCh37]
Chr3:3q13.2		 likely benign
NM_001009899.4(USF3):c.3762G>A (p.Leu1254=) single nucleotide variant not provided [RCV003434761] Chr3:113657920 [GRCh38]
Chr3:113376767 [GRCh37]
Chr3:3q13.2		 likely benign
NM_001009899.4(USF3):c.5310G>A (p.Met1770Ile) single nucleotide variant not provided [RCV003434760] Chr3:113656372 [GRCh38]
Chr3:113375219 [GRCh37]
Chr3:3q13.2		 likely benign
NM_001009899.4(USF3):c.5278A>G (p.Ile1760Val) single nucleotide variant not provided [RCV003437948] Chr3:113656404 [GRCh38]
Chr3:113375251 [GRCh37]
Chr3:3q13.2		 likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3747
Count of miRNA genes:1126
Interacting mature miRNAs:1383
Transcripts:ENST00000316407, ENST00000478658, ENST00000491165, ENST00000496826
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-59898  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373113,367,538 - 113,367,640UniSTSGRCh37
Build 363114,850,228 - 114,850,330RGDNCBI36
Celera3111,776,111 - 111,776,213RGD
Cytogenetic Map3q13.2UniSTS
HuRef3110,742,468 - 110,742,570UniSTS
TNG Radiation Hybrid Map112263.0UniSTS
RH93538  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373113,367,537 - 113,367,655UniSTSGRCh37
Build 363114,850,227 - 114,850,345RGDNCBI36
Celera3111,776,110 - 111,776,228RGD
Cytogenetic Map3q13.2UniSTS
HuRef3110,742,467 - 110,742,585UniSTS
GeneMap99-GB4 RH Map3410.87UniSTS
SHGC-85037  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373113,411,932 - 113,412,207UniSTSGRCh37
Build 363114,894,622 - 114,894,897RGDNCBI36
Celera3111,820,476 - 111,820,751RGD
Cytogenetic Map3q13.2UniSTS
HuRef3110,786,905 - 110,787,180UniSTS
TNG Radiation Hybrid Map112239.0UniSTS
D3S2753E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373113,367,350 - 113,367,424UniSTSGRCh37
Build 363114,850,040 - 114,850,114RGDNCBI36
Celera3111,775,923 - 111,775,997RGD
Cytogenetic Map3q13.2UniSTS
HuRef3110,742,280 - 110,742,354UniSTS
SGC33336  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373113,368,386 - 113,368,512UniSTSGRCh37
Build 363114,851,076 - 114,851,202RGDNCBI36
Celera3111,776,959 - 111,777,085RGD
Cytogenetic Map3q13.2UniSTS
HuRef3110,743,316 - 110,743,442UniSTS
GeneMap99-GB4 RH Map3393.74UniSTS
Whitehead-RH Map3506.8UniSTS
NCBI RH Map3915.1UniSTS
D3S430  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373113,406,018 - 113,406,162UniSTSGRCh37
Build 363114,888,708 - 114,888,852RGDNCBI36
Celera3111,814,554 - 111,814,698RGD
HuRef3110,780,981 - 110,781,127UniSTS
A003P34  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373113,368,419 - 113,368,662UniSTSGRCh37
Build 363114,851,109 - 114,851,352RGDNCBI36
Celera3111,776,992 - 111,777,235RGD
Cytogenetic Map3q13.2UniSTS
HuRef3110,743,349 - 110,743,592UniSTS
GeneMap99-GB4 RH Map3410.56UniSTS
Whitehead-RH Map3504.6UniSTS
SHGC-77185  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373113,368,464 - 113,368,632UniSTSGRCh37
Build 363114,851,154 - 114,851,322RGDNCBI36
Celera3111,777,037 - 111,777,205RGD
Cytogenetic Map3q13.2UniSTS
HuRef3110,743,394 - 110,743,562UniSTS
TNG Radiation Hybrid Map112266.0UniSTS
GeneMap99-GB4 RH Map3410.87UniSTS
NCBI RH Map3927.8UniSTS
A004O36  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh373113,372,755 - 113,372,854UniSTSGRCh37
Build 363114,855,445 - 114,855,544RGDNCBI36
Celera3111,781,318 - 111,781,417RGD
Cytogenetic Map3q13.2UniSTS
GeneMap99-GB4 RH Map3409.76UniSTS
NCBI RH Map3924.7UniSTS
L17971  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1q21UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map1q42.11UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map4q21.23UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map3p25UniSTS
Cytogenetic Map9q21.32UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic MapXq22UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map11p15UniSTS
Cytogenetic Map1p21.3UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic MapXq21.1UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map18q21.31UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map7q22.3UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map1p31UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map18q12.2UniSTS
Cytogenetic Map15q13.3UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map20p11.1UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map9q34.13UniSTS
L17877  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map6p22UniSTS
Cytogenetic Map6q14.1UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic MapXp22.3UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map4p15.31UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic MapXq21.1UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map18q21.31UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map20pter-q12UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map9q21.3UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map11q12.2UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map8q13.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map19qUniSTS
Cytogenetic Map4p16UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map12q14.2UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map18q12.2UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map15q13.3UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map17q25.3UniSTS
D8S2279  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.12UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q22.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.1-p12UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map8p23UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map13q14.1-q14.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map3q13.1-q13.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17p13.1-p12UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map14q31-q32UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map1q23.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map4q32.2UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map5q14.2UniSTS
Cytogenetic Map4q32.1UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map1p35.2UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map18q12UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map3q27.2UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map17q21.2-q21.3UniSTS
Cytogenetic Map5q32-q34UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map3q21.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map10p12UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map8p22-p21UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map12q21.33UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map3q25UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map22q13.31-q13.33UniSTS
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Cytogenetic Map11p11.2UniSTS
Cytogenetic Map1q41UniSTS
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Cytogenetic Map10q26.1UniSTS
Cytogenetic Map9q32-q33.3UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q33-q34UniSTS
Cytogenetic Map5q11.2-q13.2UniSTS
Cytogenetic Map13q32UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map5q22UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic MapXq13.3UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map3p26.3UniSTS
Cytogenetic Map2q11.1UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map12q24.23UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic MapXp22.31UniSTS
Cytogenetic MapXp21.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map14q11.2-q12UniSTS
Cytogenetic Map3p24UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map8q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map11cen-q12UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map7q22-q31UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map1p35-p34UniSTS
Cytogenetic Map4p13-p12UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map9q31-q34UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q12.12UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1pUniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map2qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map5q14.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map9p21.1UniSTS
Cytogenetic Map9q34.2-q34.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 99 10 39 26 281 28 130 117 91 53 110 83 3 11 79
Low 2340 2881 1685 598 1624 437 4227 2028 3607 362 1349 1529 172 1 1193 2709 6 2
Below cutoff 100 2 46 52 36 4 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_055006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001009899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_111981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005247208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017005871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017005872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024453391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024453392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054345662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054345663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054345664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB095938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC055740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC108693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX537728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR749439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF457673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000316407   ⟹   ENSP00000320794
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,648,385 - 113,696,642 (-)Ensembl
RefSeq Acc Id: ENST00000478658   ⟹   ENSP00000420721
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,653,239 - 113,674,896 (-)Ensembl
RefSeq Acc Id: ENST00000491165   ⟹   ENSP00000420752
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,648,385 - 113,696,646 (-)Ensembl
RefSeq Acc Id: ENST00000496826
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3113,653,239 - 113,670,233 (-)Ensembl
RefSeq Acc Id: NM_001009899   ⟹   NP_001009899
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383113,648,385 - 113,696,642 (-)NCBI
GRCh373113,367,232 - 113,415,493 (-)RGD
Build 363114,849,922 - 114,898,183 (-)NCBI Archive
Celera3111,775,805 - 111,824,038 (-)RGD
HuRef3110,742,162 - 110,790,466 (-)ENTREZGENE
CHM1_13113,330,573 - 113,378,838 (-)NCBI
T2T-CHM13v2.03116,369,551 - 116,417,840 (-)NCBI
Sequence:
RefSeq Acc Id: NR_111981
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383113,648,385 - 113,696,642 (-)NCBI
CHM1_13113,330,573 - 113,378,838 (-)NCBI
T2T-CHM13v2.03116,369,551 - 116,417,840 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005247208   ⟹   XP_005247265
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383113,648,385 - 113,696,642 (-)NCBI
GRCh373113,367,232 - 113,415,493 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017005871   ⟹   XP_016861360
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383113,648,385 - 113,696,642 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017005872   ⟹   XP_016861361
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383113,648,385 - 113,696,642 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054345662   ⟹   XP_054201637
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03116,369,551 - 116,417,840 (-)NCBI
RefSeq Acc Id: XM_054345663   ⟹   XP_054201638
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03116,369,551 - 116,417,840 (-)NCBI
RefSeq Acc Id: XM_054345664   ⟹   XP_054201639
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.03116,369,551 - 116,417,840 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001009899   ⟸   NM_001009899
- UniProtKB: Q8IVF3 (UniProtKB/Swiss-Prot),   Q7Z3L9 (UniProtKB/Swiss-Prot),   Q68DE3 (UniProtKB/Swiss-Prot),   Q9H8T4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005247265   ⟸   XM_005247208
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_016861361   ⟸   XM_017005872
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_016861360   ⟸   XM_017005871
- Peptide Label: isoform X1
- UniProtKB: Q8IVF3 (UniProtKB/Swiss-Prot),   Q7Z3L9 (UniProtKB/Swiss-Prot),   Q68DE3 (UniProtKB/Swiss-Prot),   Q9H8T4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000420721   ⟸   ENST00000478658
RefSeq Acc Id: ENSP00000420752   ⟸   ENST00000491165
RefSeq Acc Id: ENSP00000320794   ⟸   ENST00000316407
RefSeq Acc Id: XP_054201639   ⟸   XM_054345664
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054201637   ⟸   XM_054345662
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054201638   ⟸   XM_054345663
- Peptide Label: isoform X2
Protein Domains
bHLH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68DE3-F1-model_v2 AlphaFold Q68DE3 1-2245 view protein structure

Promoters
RGD ID:6865278
Promoter ID:EPDNEW_H5804
Type:initiation region
Name:USF3_1
Description:upstream transcription factor family member 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh383113,696,605 - 113,696,665EPDNEW
RGD ID:6801218
Promoter ID:HG_KWN:45862
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000316407,   UC010HQL.1
Position:
Human AssemblyChrPosition (strand)Source
Build 363114,897,691 - 114,899,172 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:30494 AgrOrtholog
COSMIC USF3 COSMIC
Ensembl Genes ENSG00000176542 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000316407 ENTREZGENE
  ENST00000316407.9 UniProtKB/Swiss-Prot
  ENST00000478658 ENTREZGENE
  ENST00000478658.1 UniProtKB/Swiss-Prot
  ENST00000491165 ENTREZGENE
  ENST00000491165.5 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000176542 GTEx
HGNC ID HGNC:30494 ENTREZGENE
Human Proteome Map USF3 Human Proteome Map
InterPro bHLH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USF3_bHLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:205717 UniProtKB/Swiss-Prot
NCBI Gene 205717 ENTREZGENE
OMIM 617568 OMIM
PANTHER BASIC HELIX-LOOP-HELIX DOMAIN-CONTAINING PROTEIN USF3 UniProtKB/Swiss-Prot
  BASIC HELIX-LOOP-HELIX DOMAIN-CONTAINING PROTEIN USF3 UniProtKB/Swiss-Prot
  BASIC HELIX-LOOP-HELIX DOMAIN-CONTAINING PROTEIN USF3 UniProtKB/TrEMBL
  BASIC HELIX-LOOP-HELIX DOMAIN-CONTAINING PROTEIN USF3 UniProtKB/TrEMBL
Pfam HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA142671594 PharmGKB
PROSITE BHLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt C9JBW0_HUMAN UniProtKB/TrEMBL
  Q68DE3 ENTREZGENE
  Q7Z3L9 ENTREZGENE
  Q8IVF3 ENTREZGENE
  Q9H8T4 ENTREZGENE
  USF3_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q7Z3L9 UniProtKB/Swiss-Prot
  Q8IVF3 UniProtKB/Swiss-Prot
  Q9H8T4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-10-20 USF3  upstream transcription factor family member 3  KIAA2018  KIAA2018  Symbol and/or name change 5135510 APPROVED