Gene: FAM169BP (family with sequence similarity 169 member B, pseudogene) Homo sapiens
Analyze
Symbol:
FAM169BP
Name:
family with sequence similarity 169 member B, pseudogene
RGD ID:
1602962
HGNC Page
HGNC:26835
Description:
INTERACTS WITH aflatoxin B1; Aflatoxin B2 alpha; benzo[a]pyrene
Type:
pseudo (Ensembl: lncRNA)
RefSeq Status:
VALIDATED
Previously known as:
FAM169B; family with sequence similarity 169 member B; family with sequence similarity 169, member B; FLJ39743; hypothetical protein LOC283777
RGD Orthologs
Alliance Genes
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Mus musculus (house mouse):
Fam169b (family with sequence similarity 169, member B) HGNC
HGNC, NCBI, Panther, PhylomeDB
Rattus norvegicus (Norway rat):
Fam169b (family with sequence similarity 169, member B) HGNC
EggNOG, Ensembl, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, PhylomeDB
Chinchilla lanigera (long-tailed chinchilla):
Fam169b (Protein FAM169B) NCBI
Ortholog
Pan paniscus (bonobo/pygmy chimpanzee):
FAM169BP (Protein FAM169B) NCBI
Ortholog
Canis lupus familiaris (dog):
LOC608120 (protein FAM169B) HGNC
NCBI
Sus scrofa (pig):
FAM169B (Protein FAM169B) HGNC
EggNOG, Ensembl, NCBI, OrthoDB, Panther
Chlorocebus sabaeus (green monkey):
LOC103231258 (protein FAM169B) NCBI
Ortholog
Heterocephalus glaber (naked mole-rat):
Fam169b (Protein FAM169B) NCBI
Ortholog
Alliance orthologs 3
Rattus norvegicus (Norway rat):
Fam169b (family with sequence similarity 169, member B)
Alliance
DIOPT (Ensembl Compara|HGNC|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Fam169b (family with sequence similarity 169, member B)
Alliance
DIOPT (Ensembl Compara|HGNC|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
fam169b (family with sequence similarity 169 member B)
Alliance
DIOPT (Ensembl Compara|InParanoid|OrthoFinder|PANTHER|PhylomeDB|ZFIN)
Allele / Splice:
See ClinVar data
Latest Assembly:
GRCh38 - Human Genome Assembly GRCh38
Position:
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 15 98,437,162 - 98,514,336 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 15 98,441,071 - 98,520,386 (-) Ensembl GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 15 98,437,162 - 98,514,382 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 15 98,980,391 - 99,057,565 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 15 96,797,914 - 96,875,134 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 15 75,398,171 - 75,475,245 (-) NCBI Celera Cytogenetic Map 15 q26.3 NCBI HuRef 15 75,108,821 - 75,185,983 (-) NCBI HuRef CHM1_1 15 98,821,961 - 98,899,182 (-) NCBI CHM1_1 T2T-CHM13v2.0 15 96,201,545 - 96,278,778 (-) NCBI T2T-CHM13v2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
References
Additional References at PubMed
Genomics
Comparative Map Data
FAM169BP Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 15 98,437,162 - 98,514,336 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 15 98,441,071 - 98,520,386 (-) Ensembl GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 15 98,437,162 - 98,514,382 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 15 98,980,391 - 99,057,565 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 15 96,797,914 - 96,875,134 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 15 75,398,171 - 75,475,245 (-) NCBI Celera Cytogenetic Map 15 q26.3 NCBI HuRef 15 75,108,821 - 75,185,983 (-) NCBI HuRef CHM1_1 15 98,821,961 - 98,899,182 (-) NCBI CHM1_1 T2T-CHM13v2.0 15 96,201,545 - 96,278,778 (-) NCBI T2T-CHM13v2.0
Fam169b Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 7 67,923,587 - 68,012,837 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 7 67,923,587 - 68,012,840 (+) Ensembl GRCm39 Ensembl GRCm38 7 68,273,839 - 68,363,089 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 7 68,273,839 - 68,363,092 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 7 75,418,725 - 75,507,975 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 7 68,174,346 - 68,236,602 (+) NCBI MGSCv36 mm8 Celera 7 65,730,746 - 65,819,701 (+) NCBI Celera Cytogenetic Map 7 C NCBI cM Map 7 37.49 NCBI
Fam169b Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 1 131,288,780 - 131,378,548 (+) NCBI GRCr8 mRatBN7.2 1 121,878,670 - 121,968,272 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 1 121,878,713 - 121,958,470 (+) Ensembl mRatBN7.2 Ensembl Rnor_6.0 1 129,254,242 - 129,336,083 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 1 129,255,396 - 129,334,292 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 1 130,313,012 - 130,392,159 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 1 123,056,102 - 123,114,691 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 1 114,076,719 - 114,158,704 (+) NCBI Celera Cytogenetic Map 1 q22 NCBI
Fam169b Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 NW_004955416 25,886,592 - 26,061,346 (-) NCBI ChiLan1.0 ChiLan1.0
FAM169BP Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 16 87,982,226 - 88,066,541 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 15 91,681,639 - 91,729,196 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 15 77,122,837 - 77,169,640 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 15 96,308,725 - 96,382,737 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 15 96,308,725 - 96,356,249 (-) Ensembl panpan1.1 panPan2
LOC608120 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 3 42,146,398 - 42,242,555 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 3 44,854,804 - 44,942,158 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 3 42,564,174 - 42,652,279 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 3 42,563,903 - 42,652,275 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 3 42,079,896 - 42,175,981 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 3 42,310,780 - 42,407,269 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 3 42,539,406 - 42,626,978 (+) NCBI UU_Cfam_GSD_1.0
FAM169B
LOC103231258
Fam169b
Clinical Variants
GRCh38/hg38 15q26.3(chr15:98364684-99338342)x3 copy number gain
Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052366 ]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052366 ]|See cases [RCV000052366 ]
Chr15:98364684..99338342 [GRCh38]
pathogenic
GRCh38/hg38 15q24.2-26.3(chr15:75307767-101723215)x3 copy number gain
Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052346 ]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052346 ]|See cases [RCV000052346 ]
Chr15:75307767..101723215 [GRCh38]
pathogenic
NM_182562.2(FAM169B):c.367+2923G>A single nucleotide variant
Lung cancer [RCV000099790 ]
Chr15:98448905 [GRCh38]
uncertain significance
miRNA Target Status
Predicted Target Of
Count of predictions: 2166 Count of miRNA genes: 671 Interacting mature miRNAs: 752 Transcripts: ENST00000332908, ENST00000558256 Prediction methods: Miranda, Rnahybrid Result types: miRGate_prediction 
