SNORA71E (small nucleolar RNA, H/ACA box 71E) - Rat Genome Database

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Gene: SNORA71E (small nucleolar RNA, H/ACA box 71E) Homo sapiens
Analyze
Symbol: SNORA71E
Name: small nucleolar RNA, H/ACA box 71E
RGD ID: 1602575
HGNC Page HGNC:32632
Description: Predicted to be involved in RNA processing. Predicted to be located in nucleolus; INTERACTS WITH arsane; arsenic atom; benzo[a]pyrene.
Type: snorna
RefSeq Status: PROVISIONAL
Previously known as: ACA39; SNORA39
RGD Orthologs
Mouse
Rat
Dog
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382038,448,083 - 38,448,218 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2038,448,084 - 38,448,215 (+)EnsemblGRCh38hg38GRCh38
GRCh372037,076,726 - 37,076,861 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362036,510,140 - 36,510,275 (+)NCBINCBI36Build 36hg18NCBI36
Celera2033,785,532 - 33,785,667 (+)NCBICelera
Cytogenetic Map20q11.23NCBI
HuRef2033,811,780 - 33,811,915 (+)NCBIHuRef
CHM1_12036,980,468 - 36,980,603 (+)NCBICHM1_1
T2T-CHM13v2.02040,175,680 - 40,175,815 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15199136   PMID:16381836   PMID:19446021  


Genomics

Comparative Map Data
SNORA71E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382038,448,083 - 38,448,218 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2038,448,084 - 38,448,215 (+)EnsemblGRCh38hg38GRCh38
GRCh372037,076,726 - 37,076,861 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362036,510,140 - 36,510,275 (+)NCBINCBI36Build 36hg18NCBI36
Celera2033,785,532 - 33,785,667 (+)NCBICelera
Cytogenetic Map20q11.23NCBI
HuRef2033,811,780 - 33,811,915 (+)NCBIHuRef
CHM1_12036,980,468 - 36,980,603 (+)NCBICHM1_1
T2T-CHM13v2.02040,175,680 - 40,175,815 (+)NCBIT2T-CHM13v2.0
Gm25187
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392158,220,142 - 158,220,274 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2158,220,142 - 158,220,274 (+)EnsemblGRCm39 Ensembl
GRCm382158,378,222 - 158,378,354 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2158,378,222 - 158,378,354 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map2H1NCBI
Snora71e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83167,453,717 - 167,453,850 (+)NCBIGRCr8
mRatBN7.23147,033,814 - 147,033,947 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3147,033,814 - 147,033,947 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map3q42NCBI
LOC119865796
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2426,577,797 - 26,577,923 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02427,628,600 - 27,628,726 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2427,628,600 - 27,628,726 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12426,902,474 - 26,902,600 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02427,010,704 - 27,010,830 (+)NCBIUNSW_CanFamBas_1.0


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 20p13-q13.33(chr20:99557-64277321)x3 copy number gain See cases [RCV000135859] Chr20:99557..64277321 [GRCh38]
Chr20:80198..62908674 [GRCh37]
Chr20:28198..62379118 [NCBI36]
Chr20:20p13-q13.33
pathogenic
GRCh38/hg38 20q11.22-13.12(chr20:35237946-47631818)x1 copy number loss See cases [RCV000140816] Chr20:35237946..47631818 [GRCh38]
Chr20:33825749..46260562 [GRCh37]
Chr20:33289165..45693969 [NCBI36]
Chr20:20q11.22-13.12
pathogenic
GRCh38/hg38 20q11.22-12(chr20:34541747-39663219)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052766]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052766]|See cases [RCV000052766] Chr20:34541747..39663219 [GRCh38]
Chr20:33129551..38291861 [GRCh37]
Chr20:32593212..37725275 [NCBI36]
Chr20:20q11.22-12
pathogenic
GRCh38/hg38 20p12.2-q12(chr20:9811433-39316956)x3 copy number gain See cases [RCV000052999] Chr20:9811433..39316956 [GRCh38]
Chr20:9792081..37945599 [GRCh37]
Chr20:9740081..37379013 [NCBI36]
Chr20:20p12.2-q12
pathogenic
GRCh38/hg38 20q11.22-13.11(chr20:34249453-43359749)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053002]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053002]|See cases [RCV000053002] Chr20:34249453..43359749 [GRCh38]
Chr20:32837259..41988389 [GRCh37]
Chr20:32300920..41421803 [NCBI36]
Chr20:20q11.22-13.11
pathogenic

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1126 631 890 171 332 77 1974 526 1361 34 690 770 94 539 1207
Below cutoff 611 774 297 140 247 93 767 544 983 38 237 190 47 295 488

Sequence


RefSeq Acc Id: ENST00000365032
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2038,448,084 - 38,448,215 (+)Ensembl
RefSeq Acc Id: NR_002972
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382038,448,083 - 38,448,218 (+)NCBI
GRCh372037,076,726 - 37,076,861 (+)RGD
Build 362036,510,140 - 36,510,275 (+)NCBI Archive
Celera2033,785,532 - 33,785,667 (+)RGD
HuRef2033,811,780 - 33,811,915 (+)RGD
CHM1_12036,980,468 - 36,980,603 (+)NCBI
T2T-CHM13v2.02040,175,680 - 40,175,815 (+)NCBI
Sequence:
Promoters
RGD ID:6799085
Promoter ID:HG_KWN:39394
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid,   NB4
Transcripts:UC002XIP.2
Position:
Human AssemblyChrPosition (strand)Source
Build 362036,510,099 - 36,510,599 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
COSMIC SNORA71E COSMIC
Ensembl Genes ENSG00000274309 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000365032 ENTREZGENE
GTEx ENSG00000274309 GTEx
HGNC ID HGNC:32632 ENTREZGENE
Human Proteome Map SNORA71E Human Proteome Map
NCBI Gene 677821 ENTREZGENE
RNAcentral URS00005B5A80 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-08-26 SNORA71E  small nucleolar RNA, H/ACA box 71E  SNORA39  small nucleolar RNA, H/ACA box 39  Symbol and/or name change 5135510 APPROVED