LIMA1 (LIM domain and actin binding 1) - Rat Genome Database

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Gene: LIMA1 (LIM domain and actin binding 1) Homo sapiens
Analyze
Symbol: LIMA1
Name: LIM domain and actin binding 1
RGD ID: 1602328
HGNC Page HGNC
Description: Exhibits actin filament binding activity and actin monomer binding activity. Involved in actin filament bundle assembly; negative regulation of actin filament depolymerization; and ruffle organization. Localizes to several cellular components, including cleavage furrow; focal adhesion; and stress fiber.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: 1110021C24Rik; epithelial protein lost in neoplasm beta; EPLIN; FLJ38853; LDLCQ8; LIM domain and actin-binding protein 1; MGC131726; SREBP3; sterol regulatory element binding protein 3
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1250,175,788 - 50,283,546 (-)EnsemblGRCh38hg38GRCh38
GRCh381250,175,788 - 50,283,520 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371250,569,563 - 50,677,303 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361248,855,838 - 48,963,539 (-)NCBINCBI36hg18NCBI36
Celera1249,365,319 - 49,473,110 (-)NCBI
Cytogenetic Map12q13.12NCBI
HuRef1247,602,746 - 47,710,458 (-)NCBIHuRef
CHM1_11250,535,584 - 50,643,310 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (EXP)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-hydroxypropanoic acid  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-methylcholanthrene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
acrolein  (EXP)
all-trans-retinoic acid  (EXP)
alpha-pinene  (EXP)
Aroclor 1254  (ISO)
atrazine  (EXP)
avobenzone  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (EXP)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bortezomib  (EXP)
butan-1-ol  (EXP)
carbon nanotube  (ISO)
chloropicrin  (EXP)
cisplatin  (EXP)
cobalt dichloride  (EXP,ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (EXP)
coumestrol  (EXP)
crocidolite asbestos  (EXP,ISO)
CU-O LINKAGE  (EXP)
cyclosporin A  (EXP)
dibutyl phthalate  (ISO)
dichloroacetic acid  (ISO)
dorsomorphin  (EXP)
doxorubicin  (EXP)
entinostat  (EXP)
enzyme inhibitor  (EXP)
ethanol  (ISO)
fenamidone  (ISO)
ferric oxide  (ISO)
geldanamycin  (EXP)
glycidol  (ISO)
gold atom  (EXP)
gold(0)  (EXP)
hexadecanoic acid  (EXP)
hydrogen peroxide  (EXP)
isobutanol  (EXP)
lipopolysaccharide  (ISO)
methapyrilene  (EXP)
methyl methanesulfonate  (EXP)
methylmercury chloride  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenethyl isothiocyanate  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (EXP)
phytoestrogen  (EXP)
pirinixic acid  (ISO)
progesterone  (EXP)
quercetin  (EXP)
rac-lactic acid  (EXP)
resveratrol  (ISO)
SB 431542  (EXP)
silicon dioxide  (EXP)
silver atom  (EXP)
silver(0)  (EXP)
sulforaphane  (EXP,ISO)
tamoxifen  (ISO)
tetrachloromethane  (ISO)
thimerosal  (EXP)
topotecan  (ISO)
torcetrapib  (EXP)
trichostatin A  (EXP)
triphenyl phosphate  (ISO)
tunicamycin  (EXP)
valproic acid  (EXP)
vincristine  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8125298   PMID:10618726   PMID:10806352   PMID:10931946   PMID:11230166   PMID:11256614   PMID:12477932   PMID:12566430   PMID:14702039   PMID:15161933   PMID:15302935   PMID:15324660  
PMID:15342556   PMID:15489334   PMID:15498874   PMID:15592455   PMID:16083285   PMID:16344560   PMID:16565220   PMID:17081983   PMID:17620599   PMID:17979178   PMID:18029348   PMID:18093941  
PMID:18796137   PMID:19221476   PMID:20309963   PMID:20848180   PMID:20876399   PMID:21280222   PMID:21423176   PMID:21625216   PMID:21832049   PMID:21873635   PMID:22194609   PMID:22337587  
PMID:22493360   PMID:22658674   PMID:22939629   PMID:22990118   PMID:23182705   PMID:23188829   PMID:23314748   PMID:23398456   PMID:24135282   PMID:24255178   PMID:24332808   PMID:24457600  
PMID:24694988   PMID:24711643   PMID:24737748   PMID:24797263   PMID:25144556   PMID:25468996   PMID:25496916   PMID:25569716   PMID:25659891   PMID:25662211   PMID:25798074   PMID:25921289  
PMID:26186194   PMID:26350886   PMID:26496610   PMID:26527279   PMID:26561776   PMID:26618866   PMID:26949251   PMID:27035883   PMID:27173435   PMID:27377895   PMID:27558965   PMID:27684187  
PMID:28302793   PMID:28330616   PMID:28378594   PMID:28465438   PMID:28514442   PMID:28846114   PMID:28977470   PMID:29128334   PMID:29507755   PMID:29513927   PMID:29568061   PMID:29844126  
PMID:29846670   PMID:29880681   PMID:29961565   PMID:30021884   PMID:30098000   PMID:30196744   PMID:30344098   PMID:30425250   PMID:30559450   PMID:30737378   PMID:30890647   PMID:30940648  
PMID:31010829   PMID:31091453   PMID:31300519   PMID:31519766   PMID:31536960   PMID:31586073   PMID:31644899   PMID:31980649   PMID:32041737   PMID:32457219   PMID:32496561   PMID:32521226  
PMID:32780723   PMID:33144569  


Genomics

Comparative Map Data
LIMA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1250,175,788 - 50,283,546 (-)EnsemblGRCh38hg38GRCh38
GRCh381250,175,788 - 50,283,520 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371250,569,563 - 50,677,303 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361248,855,838 - 48,963,539 (-)NCBINCBI36hg18NCBI36
Celera1249,365,319 - 49,473,110 (-)NCBI
Cytogenetic Map12q13.12NCBI
HuRef1247,602,746 - 47,710,458 (-)NCBIHuRef
CHM1_11250,535,584 - 50,643,310 (-)NCBICHM1_1
Lima1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391599,676,349 - 99,773,371 (-)NCBIGRCm39mm39
GRCm39 Ensembl1599,676,351 - 99,773,337 (-)Ensembl
GRCm381599,778,468 - 99,875,477 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1599,778,470 - 99,875,456 (-)EnsemblGRCm38mm10GRCm38
MGSCv371599,608,899 - 99,705,887 (-)NCBIGRCm37mm9NCBIm37
MGSCv361599,606,542 - 99,648,106 (-)NCBImm8
Celera15101,933,926 - 102,030,215 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.13NCBI
Lima1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27130,901,717 - 131,001,573 (-)NCBI
Rnor_6.0 Ensembl7141,428,063 - 141,528,397 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.07141,428,113 - 141,528,447 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X115,932,904 - 116,035,032 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47138,519,353 - 138,617,856 (-)NCBIRGSC3.4rn4RGSC3.4
Celera7127,383,104 - 127,448,452 (-)NCBICelera
Cytogenetic Map7q36NCBI
Lima1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955547730,073 - 827,783 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955547730,152 - 827,644 (-)NCBIChiLan1.0ChiLan1.0
LIMA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11239,370,497 - 39,476,142 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1239,399,611 - 39,476,142 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01238,473,223 - 38,580,511 (+)NCBIMhudiblu_PPA_v0panPan3
LIMA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1274,473,151 - 4,561,916 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl274,473,179 - 4,561,574 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2741,696,216 - 41,784,478 (-)NCBI
ROS_Cfam_1.0274,521,775 - 4,611,296 (+)NCBI
UMICH_Zoey_3.1274,487,057 - 4,576,041 (+)NCBI
UNSW_CanFamBas_1.0274,476,006 - 4,565,713 (+)NCBI
UU_Cfam_GSD_1.02742,091,081 - 42,179,519 (-)NCBI
Lima1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494565,312,989 - 65,351,458 (+)NCBI
SpeTri2.0NW_0049365127,812,856 - 7,851,859 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LIMA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl516,074,436 - 16,177,104 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1516,074,436 - 16,177,122 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2516,487,730 - 16,492,647 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LIMA1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11146,403,808 - 46,508,278 (-)NCBI
ChlSab1.1 Ensembl1146,403,826 - 46,508,249 (-)Ensembl
Vero_WHO_p1.0NW_023666037199,611,967 - 199,715,309 (+)NCBI
Lima1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248162,052,575 - 2,146,485 (+)NCBI

Position Markers
D12S1620  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,605,352 - 50,605,649UniSTSGRCh37
Build 361248,891,619 - 48,891,916RGDNCBI36
Celera1249,401,114 - 49,401,411RGD
Cytogenetic Map12q13UniSTS
HuRef1247,638,517 - 47,638,814UniSTS
Marshfield Genetic Map1264.43RGD
Marshfield Genetic Map1264.43UniSTS
Genethon Genetic Map1265.3UniSTS
TNG Radiation Hybrid Map1222957.0UniSTS
deCODE Assembly Map1264.0UniSTS
Stanford-G3 RH Map121994.0UniSTS
NCBI RH Map12421.8UniSTS
GeneMap99-G3 RH Map121940.0UniSTS
RH119301  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,570,797 - 50,571,078UniSTSGRCh37
Build 361248,857,064 - 48,857,345RGDNCBI36
Celera1249,366,553 - 49,366,834RGD
Cytogenetic Map12q13UniSTS
HuRef1247,603,980 - 47,604,261UniSTS
TNG Radiation Hybrid Map1222947.0UniSTS
D12S1145E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,596,055 - 50,596,209UniSTSGRCh37
Build 361248,882,322 - 48,882,476RGDNCBI36
Celera1249,391,814 - 49,391,968RGD
Cytogenetic Map12q13UniSTS
HuRef1247,629,218 - 47,629,372UniSTS
RH47470  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,570,121 - 50,570,265UniSTSGRCh37
Build 361248,856,388 - 48,856,532RGDNCBI36
Celera1249,365,877 - 49,366,021RGD
Cytogenetic Map12q13UniSTS
HuRef1247,603,304 - 47,603,448UniSTS
GeneMap99-GB4 RH Map12226.16UniSTS
NCBI RH Map12435.4UniSTS
RH48418  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,570,908 - 50,571,090UniSTSGRCh37
Build 361248,857,175 - 48,857,357RGDNCBI36
Celera1249,366,664 - 49,366,846RGD
Cytogenetic Map12q13UniSTS
HuRef1247,604,091 - 47,604,273UniSTS
GeneMap99-GB4 RH Map12226.06UniSTS
NCBI RH Map12421.8UniSTS
D12S1908  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,569,681 - 50,569,815UniSTSGRCh37
Build 361248,855,948 - 48,856,082RGDNCBI36
Celera1249,365,437 - 49,365,571RGD
Cytogenetic Map12q13UniSTS
HuRef1247,602,864 - 47,602,998UniSTS
Stanford-G3 RH Map122000.0UniSTS
GeneMap99-G3 RH Map121946.0UniSTS
EPLIN__7599  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,569,428 - 50,570,284UniSTSGRCh37
Build 361248,855,695 - 48,856,551RGDNCBI36
Celera1249,365,184 - 49,366,040RGD
HuRef1247,602,611 - 47,603,467UniSTS
UniSTS:51627  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,607,725 - 50,607,948UniSTSGRCh37
Build 361248,893,992 - 48,894,215RGDNCBI36
Celera1249,403,487 - 49,403,713RGD
HuRef1247,640,890 - 47,641,131UniSTS
L29953  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map18q22.3UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map18p11.2UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map14q13.2UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map4p15.32UniSTS
Cytogenetic MapXp22.2-p22.1UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map10q24-q25UniSTS
Cytogenetic MapXq21.2UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map9p13.3UniSTS
D8S2279  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.12UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q22.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.1-p12UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map8p23UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map13q14.1-q14.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map3q13.1-q13.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17p13.1-p12UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map14q31-q32UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map1q23.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map4q32.2UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map5q14.2UniSTS
Cytogenetic Map4q32.1UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map1p35.2UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map18q12UniSTS
Cytogenetic Map17q21.33UniSTS
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Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map3q23-q24UniSTS
Cytogenetic Map3q12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map3q22.3UniSTS
Cytogenetic Map7q21.3UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map22q12-q13UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map1q24.3UniSTS
Cytogenetic Map9q33.1UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map2p16.2UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map4q21UniSTS
Cytogenetic Map13q12.2UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map1q23UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map11q13.3UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map11q12.1UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map8p21UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map4q32.3UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map10q26.1UniSTS
Cytogenetic Map9q32-q33.3UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q33-q34UniSTS
Cytogenetic Map5q11.2-q13.2UniSTS
Cytogenetic Map13q32UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map5q22UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic MapXq13.3UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map3p26.3UniSTS
Cytogenetic Map2q11.1UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map12q24.23UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic MapXp22.31UniSTS
Cytogenetic MapXp21.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map14q11.2-q12UniSTS
Cytogenetic Map3p24UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map8q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map11cen-q12UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map7q22-q31UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map1p35-p34UniSTS
Cytogenetic Map4p13-p12UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map9q31-q34UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q12.12UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1pUniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map2qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map5q14.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map9p21.1UniSTS
Cytogenetic Map9q34.2-q34.3UniSTS
LIMA1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,575,696 - 50,575,801UniSTSGRCh37
Celera1249,371,453 - 49,371,558UniSTS
HuRef1247,608,879 - 47,608,984UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4347
Count of miRNA genes:955
Interacting mature miRNAs:1116
Transcripts:ENST00000341247, ENST00000394943, ENST00000547825, ENST00000549064, ENST00000550592, ENST00000550611, ENST00000551486, ENST00000551691, ENST00000552008, ENST00000552045, ENST00000552338, ENST00000552491, ENST00000552720, ENST00000552783, ENST00000552823, ENST00000552909
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High 1
Medium 2424 1761 1390 308 1027 150 3861 1328 1899 400 1419 1585 171 1204 2296 4
Low 11 1031 333 314 685 315 496 867 1812 18 35 24 1 492 2
Below cutoff 1 195 1 236 1 15 1 4 1 2 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_029859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001113546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001113547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001243775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011538455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017019429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017019430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA772616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB209512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC008147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC139016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF157325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF198454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF198455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF218025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH009382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK096172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK222971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK297766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK314447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL136911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX883086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC001247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC110815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC136763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP216703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP281423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA738195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HF584042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000341247   ⟹   ENSP00000340184
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1250,175,788 - 50,283,546 (-)Ensembl
RefSeq Acc Id: ENST00000394943   ⟹   ENSP00000378400
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1250,175,788 - 50,283,506 (-)Ensembl
RefSeq Acc Id: ENST00000547825   ⟹   ENSP00000448706
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1250,175,788 - 50,202,112 (-)Ensembl
RefSeq Acc Id: ENST00000549064
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1250,177,698 - 50,182,179 (-)Ensembl
RefSeq Acc Id: ENST00000550592   ⟹   ENSP00000449890
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1250,222,318 - 50,249,893 (-)Ensembl
RefSeq Acc Id: ENST00000550611
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1250,222,167 - 50,224,481 (-)Ensembl
RefSeq Acc Id: ENST00000551486
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1250,204,344 - 50,222,165 (-)Ensembl
RefSeq Acc Id: ENST00000551691   ⟹   ENSP00000447975
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1250,222,260 - 50,283,484 (-)Ensembl
RefSeq Acc Id: ENST00000552008
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1250,192,452 - 50,220,556 (-)Ensembl
RefSeq Acc Id: ENST00000552045
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1250,195,618 - 50,200,892 (-)Ensembl
RefSeq Acc Id: ENST00000552338
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1250,177,774 - 50,196,047 (-)Ensembl
RefSeq Acc Id: ENST00000552491   ⟹   ENSP00000448463
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1250,175,788 - 50,200,847 (-)Ensembl
RefSeq Acc Id: ENST00000552720   ⟹   ENSP00000448411
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1250,177,006 - 50,283,456 (-)Ensembl
RefSeq Acc Id: ENST00000552783   ⟹   ENSP00000448779
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1250,175,790 - 50,222,705 (-)Ensembl
RefSeq Acc Id: ENST00000552823   ⟹   ENSP00000450266
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1250,175,788 - 50,222,348 (-)Ensembl
RefSeq Acc Id: ENST00000552909   ⟹   ENSP00000450087
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1250,176,885 - 50,222,356 (-)Ensembl
RefSeq Acc Id: NM_001113546   ⟹   NP_001107018
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381250,175,788 - 50,283,520 (-)NCBI
GRCh371250,569,563 - 50,677,353 (-)ENTREZGENE
HuRef1247,602,746 - 47,710,458 (-)ENTREZGENE
CHM1_11250,535,584 - 50,643,310 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001113547   ⟹   NP_001107019
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381250,175,788 - 50,222,658 (-)NCBI
GRCh371250,569,563 - 50,677,353 (-)ENTREZGENE
HuRef1247,602,746 - 47,710,458 (-)ENTREZGENE
CHM1_11250,535,584 - 50,582,491 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001243775   ⟹   NP_001230704
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381250,175,780 - 50,201,533 (-)NCBI
GRCh381250,175,788 - 50,202,173 (-)NCBI
GRCh371250,569,563 - 50,677,353 (-)NCBI
HuRef1247,602,746 - 47,710,458 (-)NCBI
CHM1_11250,535,584 - 50,561,308 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001394886   ⟹   NP_001381815
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381250,175,788 - 50,249,935 (-)NCBI
RefSeq Acc Id: NM_001394887   ⟹   NP_001381816
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381250,175,788 - 50,283,520 (-)NCBI
RefSeq Acc Id: NM_001394888   ⟹   NP_001381817
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381250,175,788 - 50,249,935 (-)NCBI
RefSeq Acc Id: NM_001394889   ⟹   NP_001381818
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381250,175,788 - 50,283,520 (-)NCBI
RefSeq Acc Id: NM_001394890   ⟹   NP_001381819
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381250,175,788 - 50,283,520 (-)NCBI
RefSeq Acc Id: NM_001394891   ⟹   NP_001381820
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381250,175,788 - 50,283,520 (-)NCBI
RefSeq Acc Id: NM_001394892   ⟹   NP_001381821
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381250,175,788 - 50,283,520 (-)NCBI
RefSeq Acc Id: NM_001394893   ⟹   NP_001381822
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381250,175,788 - 50,283,520 (-)NCBI
RefSeq Acc Id: NM_016357   ⟹   NP_057441
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381250,175,788 - 50,283,520 (-)NCBI
GRCh371250,569,563 - 50,677,353 (-)ENTREZGENE
Build 361248,855,838 - 48,963,539 (-)NCBI Archive
HuRef1247,602,746 - 47,710,458 (-)ENTREZGENE
CHM1_11250,535,584 - 50,643,310 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011538455   ⟹   XP_011536757
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381250,175,788 - 50,249,893 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017019429   ⟹   XP_016874918
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381250,175,788 - 50,204,659 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017019430   ⟹   XP_016874919
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381250,175,788 - 50,283,484 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001107018 (Get FASTA)   NCBI Sequence Viewer  
  NP_001107019 (Get FASTA)   NCBI Sequence Viewer  
  NP_001230704 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381815 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381816 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381817 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381818 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381819 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381820 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381821 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381822 (Get FASTA)   NCBI Sequence Viewer  
  NP_057441 (Get FASTA)   NCBI Sequence Viewer  
  XP_016874918 (Get FASTA)   NCBI Sequence Viewer  
  XP_016874919 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF23755 (Get FASTA)   NCBI Sequence Viewer  
  AAF23756 (Get FASTA)   NCBI Sequence Viewer  
  AAF67491 (Get FASTA)   NCBI Sequence Viewer  
  AAG17267 (Get FASTA)   NCBI Sequence Viewer  
  AAH01247 (Get FASTA)   NCBI Sequence Viewer  
  AAH10664 (Get FASTA)   NCBI Sequence Viewer  
  AAI10816 (Get FASTA)   NCBI Sequence Viewer  
  AAI36764 (Get FASTA)   NCBI Sequence Viewer  
  BAA90914 (Get FASTA)   NCBI Sequence Viewer  
  BAA91092 (Get FASTA)   NCBI Sequence Viewer  
  BAA91120 (Get FASTA)   NCBI Sequence Viewer  
  BAB14625 (Get FASTA)   NCBI Sequence Viewer  
  BAD92749 (Get FASTA)   NCBI Sequence Viewer  
  BAD96691 (Get FASTA)   NCBI Sequence Viewer  
  BAG37056 (Get FASTA)   NCBI Sequence Viewer  
  BAG53224 (Get FASTA)   NCBI Sequence Viewer  
  BAG60114 (Get FASTA)   NCBI Sequence Viewer  
  CAB66845 (Get FASTA)   NCBI Sequence Viewer  
  CAE91830 (Get FASTA)   NCBI Sequence Viewer  
  CCQ43539 (Get FASTA)   NCBI Sequence Viewer  
  EAW58134 (Get FASTA)   NCBI Sequence Viewer  
  EAW58135 (Get FASTA)   NCBI Sequence Viewer  
  EAW58136 (Get FASTA)   NCBI Sequence Viewer  
  Q9UHB6 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_057441   ⟸   NM_016357
- Peptide Label: isoform 2
- UniProtKB: Q9UHB6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001107018   ⟸   NM_001113546
- Peptide Label: isoform 1
- UniProtKB: Q9UHB6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001107019   ⟸   NM_001113547
- Peptide Label: isoform 3
- UniProtKB: Q9UHB6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001230704   ⟸   NM_001243775
- Peptide Label: isoform 4
- UniProtKB: Q9UHB6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011536757   ⟸   XM_011538455
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_016874919   ⟸   XM_017019430
- Peptide Label: isoform X3
- UniProtKB: Q9UHB6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016874918   ⟸   XM_017019429
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSP00000448706   ⟸   ENST00000547825
RefSeq Acc Id: ENSP00000449890   ⟸   ENST00000550592
RefSeq Acc Id: ENSP00000378400   ⟸   ENST00000394943
RefSeq Acc Id: ENSP00000340184   ⟸   ENST00000341247
RefSeq Acc Id: ENSP00000447975   ⟸   ENST00000551691
RefSeq Acc Id: ENSP00000448463   ⟸   ENST00000552491
RefSeq Acc Id: ENSP00000450087   ⟸   ENST00000552909
RefSeq Acc Id: ENSP00000450266   ⟸   ENST00000552823
RefSeq Acc Id: ENSP00000448779   ⟸   ENST00000552783
RefSeq Acc Id: ENSP00000448411   ⟸   ENST00000552720
RefSeq Acc Id: NP_001381822   ⟸   NM_001394893
- Peptide Label: isoform 9
RefSeq Acc Id: NP_001381821   ⟸   NM_001394892
- Peptide Label: isoform 8
RefSeq Acc Id: NP_001381820   ⟸   NM_001394891
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001381819   ⟸   NM_001394890
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001381818   ⟸   NM_001394889
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001381816   ⟸   NM_001394887
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001381817   ⟸   NM_001394888
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001381815   ⟸   NM_001394886
- Peptide Label: isoform 1
Protein Domains
LIM zinc-binding

Promoters
RGD ID:6790197
Promoter ID:HG_KWN:15601
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001113547,   UC001RWH.2
Position:
Human AssemblyChrPosition (strand)Source
Build 361248,902,309 - 48,902,809 (-)MPROMDB
RGD ID:6790198
Promoter ID:HG_KWN:15604
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001113546,   NM_016357
Position:
Human AssemblyChrPosition (strand)Source
Build 361248,963,586 - 48,964,527 (-)MPROMDB
RGD ID:7223889
Promoter ID:EPDNEW_H17690
Type:multiple initiation site
Name:LIMA1_4
Description:LIM domain and actin binding 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H17691  EPDNEW_H17692  EPDNEW_H17693  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381250,202,157 - 50,202,217EPDNEW
RGD ID:7223891
Promoter ID:EPDNEW_H17691
Type:initiation region
Name:LIMA1_3
Description:LIM domain and actin binding 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H17690  EPDNEW_H17692  EPDNEW_H17693  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381250,222,355 - 50,222,415EPDNEW
RGD ID:7223893
Promoter ID:EPDNEW_H17692
Type:initiation region
Name:LIMA1_1
Description:LIM domain and actin binding 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H17690  EPDNEW_H17691  EPDNEW_H17693  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381250,222,654 - 50,222,714EPDNEW
RGD ID:7223895
Promoter ID:EPDNEW_H17693
Type:initiation region
Name:LIMA1_2
Description:LIM domain and actin binding 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H17690  EPDNEW_H17691  EPDNEW_H17692  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381250,283,520 - 50,283,580EPDNEW

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12q13.12(chr12:49840075-50315208)x3 copy number gain See cases [RCV000051958] Chr12:49840075..50315208 [GRCh38]
Chr12:50233858..50708991 [GRCh37]
Chr12:48520125..48995258 [NCBI36]
Chr12:12q13.12
uncertain significance
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33
pathogenic
GRCh38/hg38 12q13.12-13.13(chr12:50122359-53248460)x1 copy number loss See cases [RCV000142033] Chr12:50122359..53248460 [GRCh38]
Chr12:50516142..53642244 [GRCh37]
Chr12:48802409..51928511 [NCBI36]
Chr12:12q13.12-13.13
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 copy number gain See cases [RCV000258805] Chr12:1..133851895 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic|likely pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 copy number gain See cases [RCV000510482] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) copy number gain See cases [RCV000511643] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
NM_001113546.2(LIMA1):c.916_923del (p.Lys306fs) deletion LOW DENSITY LIPOPROTEIN CHOLESTEROL LEVEL QUANTITATIVE TRAIT LOCUS 8 [RCV000677193] Chr12:50200826..50200833 [GRCh38]
Chr12:50594609..50594616 [GRCh37]
Chr12:12q13.12
association
NM_001113546.2(LIMA1):c.73C>A (p.Leu25Ile) single nucleotide variant LOW DENSITY LIPOPROTEIN CHOLESTEROL LEVEL QUANTITATIVE TRAIT LOCUS 8 [RCV000677194] Chr12:50248679 [GRCh38]
Chr12:50642462 [GRCh37]
Chr12:12q13.12
association
NC_000012.11:g.26370251_54361538inv inversion not specified [RCV000714265] Chr12:26370251..54361538 [GRCh37]
Chr12:12p12.1-q13.13
uncertain significance
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3 copy number gain not provided [RCV000750246] Chr12:191619..133777645 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3 copy number gain not provided [RCV000750253] Chr12:621220..133779118 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:24636 AgrOrtholog
COSMIC LIMA1 COSMIC
Ensembl Genes ENSG00000050405 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000340184 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000378400 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000447975 UniProtKB/TrEMBL
  ENSP00000448411 UniProtKB/TrEMBL
  ENSP00000448463 UniProtKB/TrEMBL
  ENSP00000448706 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000448779 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000449890 UniProtKB/TrEMBL
  ENSP00000450087 UniProtKB/TrEMBL
  ENSP00000450266 UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000341247 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000394943 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000547825 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000550592 UniProtKB/TrEMBL
  ENST00000551691 UniProtKB/TrEMBL
  ENST00000552491 UniProtKB/TrEMBL
  ENST00000552720 UniProtKB/TrEMBL
  ENST00000552783 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000552823 UniProtKB/Swiss-Prot
  ENST00000552909 UniProtKB/TrEMBL
GTEx ENSG00000050405 GTEx
HGNC ID HGNC:24636 ENTREZGENE
Human Proteome Map LIMA1 Human Proteome Map
InterPro EPLIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:51474 UniProtKB/Swiss-Prot
NCBI Gene 51474 ENTREZGENE
OMIM 608364 OMIM
  618079 OMIM
PANTHER PTHR24206:SF57 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA143485527 PharmGKB
PROSITE LIM_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F8VQE1_HUMAN UniProtKB/TrEMBL
  F8VRN8_HUMAN UniProtKB/TrEMBL
  F8VS07_HUMAN UniProtKB/TrEMBL
  F8VTU2_HUMAN UniProtKB/TrEMBL
  F8VVQ7_HUMAN UniProtKB/TrEMBL
  L8E8R7_HUMAN UniProtKB/TrEMBL
  LIMA1_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary B2RB09 UniProtKB/Swiss-Prot
  Q2TAN7 UniProtKB/Swiss-Prot
  Q59FE8 UniProtKB/Swiss-Prot
  Q9BVF2 UniProtKB/Swiss-Prot
  Q9H8J1 UniProtKB/Swiss-Prot
  Q9HBN5 UniProtKB/Swiss-Prot
  Q9NX96 UniProtKB/Swiss-Prot
  Q9NXC3 UniProtKB/Swiss-Prot
  Q9NXU6 UniProtKB/Swiss-Prot
  Q9P0H8 UniProtKB/Swiss-Prot
  Q9UHB5 UniProtKB/Swiss-Prot