DUSP5P1 (dual specificity phosphatase 5 pseudogene 1) - Rat Genome Database

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Gene: DUSP5P1 (dual specificity phosphatase 5 pseudogene 1) Homo sapiens
Analyze
Symbol: DUSP5P1
Name: dual specificity phosphatase 5 pseudogene 1
RGD ID: 1602255
HGNC Page HGNC:32020
Description: INTERACTS WITH aflatoxin B1; all-trans-retinoic acid; crocidolite asbestos
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: DUSP5P; FLJ31401; FLJ34941; RP4-621O15.2
Related Functional Gene: DUSP5  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381228,644,910 - 228,652,425 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1228,650,241 - 228,651,379 (+)EnsemblGRCh38hg38GRCh38
GRCh371228,780,657 - 228,788,172 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361226,847,280 - 226,854,782 (+)NCBINCBI36Build 36hg18NCBI36
Celera1202,050,331 - 202,055,658 (+)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1199,271,863 - 199,279,339 (+)NCBIHuRef
CHM1_11230,052,979 - 230,060,501 (+)NCBICHM1_1
T2T-CHM13v2.01228,000,738 - 228,030,647 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11181995   PMID:14702039   PMID:24651368   PMID:26760575   PMID:26884884   PMID:30733230   PMID:34048709  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:293
Count of miRNA genes:264
Interacting mature miRNAs:280
Transcripts:ENST00000327449, ENST00000441325
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 3 3 2 17 2 1 9 12 1 17 11
Low 193 1014 345 85 166 59 1721 98 1523 144 944 536 37 367 1215 1
Below cutoff 1460 1141 976 263 570 143 2117 1441 1823 142 400 896 120 684 1299 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000441325
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1228,650,241 - 228,651,379 (+)Ensembl
RefSeq Acc Id: NR_002834
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381228,644,910 - 228,652,425 (+)NCBI
GRCh371228,780,657 - 228,788,159 (+)RGD
Build 361226,847,280 - 226,854,782 (+)NCBI Archive
Celera1202,050,331 - 202,055,658 (+)RGD
HuRef1199,271,863 - 199,279,339 (+)RGD
CHM1_11230,052,979 - 230,060,501 (+)NCBI
T2T-CHM13v2.01228,000,738 - 228,030,647 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein BAB71058 (Get FASTA)   NCBI Sequence Viewer  
  BAC03838 (Get FASTA)   NCBI Sequence Viewer  
  EAW69884 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC DUSP5P1 COSMIC
Ensembl Genes ENSG00000183929 Ensembl
GTEx ENSG00000183929 GTEx
HGNC ID HGNC:32020 ENTREZGENE
Human Proteome Map DUSP5P1 Human Proteome Map
NCBI Gene 574029 ENTREZGENE
PharmGKB PA142671940 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-11-15 DUSP5P1  dual specificity phosphatase 5 pseudogene 1  DUSP5P  dual specificity phosphatase 5 pseudogene  Symbol and/or name change 5135510 APPROVED