ALKBH8 (alkB homolog 8, tRNA methyltransferase) - Rat Genome Database

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Gene: ALKBH8 (alkB homolog 8, tRNA methyltransferase) Homo sapiens
Analyze
Symbol: ALKBH8
Name: alkB homolog 8, tRNA methyltransferase
RGD ID: 1602194
HGNC Page HGNC:25189
Description: Enables tRNA (uridine) methyltransferase activity; tRNA binding activity; and zinc ion binding activity. Involved in DNA damage response; tRNA methylation; and tRNA wobble uridine modification. Located in cytosol and nucleoplasm. Implicated in autosomal recessive intellectual developmental disorder 71.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ABH8; AlkB homologue 8; alkB, alkylation repair homolog 8; alkylated DNA repair protein alkB homolog 8; FLJ38204; MGC10235; MRT71; probable alpha-ketoglutarate-dependent dioxygenase ABH8; S-adenosyl-L-methionine-dependent tRNA methyltransferase ABH8; TRM9; TRMT9; TRMT9A; tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ABH8; tRNA methyltransferase 9 homolog; tRNA methyltransferase 9 related
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: BX284613.1  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811107,502,727 - 107,565,735 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11107,502,727 - 107,565,742 (-)EnsemblGRCh38hg38GRCh38
GRCh3711107,373,453 - 107,436,461 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611106,880,541 - 106,941,637 (-)NCBINCBI36Build 36hg18NCBI36
Celera11104,528,270 - 104,591,267 (-)NCBICelera
Cytogenetic Map11q22.3NCBI
HuRef11103,298,990 - 103,361,859 (-)NCBIHuRef
CHM1_111107,256,482 - 107,319,496 (-)NCBICHM1_1
T2T-CHM13v2.011107,509,865 - 107,572,838 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IDA,IEA)
cytosol  (IDA)
nucleoplasm  (IDA)
nucleus  (IBA,IDA,IEA)

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14702039   PMID:17207965   PMID:18029348   PMID:18187620   PMID:19293182   PMID:20123966   PMID:20308323   PMID:21244100   PMID:21285950   PMID:21873635   PMID:22065580  
PMID:24262325   PMID:26354767   PMID:26496610   PMID:27329810   PMID:30021884   PMID:31079898   PMID:31765888   PMID:32296183   PMID:32694731   PMID:33544954   PMID:34757492   PMID:34948388  
PMID:35831314   PMID:36192131  


Genomics

Comparative Map Data
ALKBH8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811107,502,727 - 107,565,735 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11107,502,727 - 107,565,742 (-)EnsemblGRCh38hg38GRCh38
GRCh3711107,373,453 - 107,436,461 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611106,880,541 - 106,941,637 (-)NCBINCBI36Build 36hg18NCBI36
Celera11104,528,270 - 104,591,267 (-)NCBICelera
Cytogenetic Map11q22.3NCBI
HuRef11103,298,990 - 103,361,859 (-)NCBIHuRef
CHM1_111107,256,482 - 107,319,496 (-)NCBICHM1_1
T2T-CHM13v2.011107,509,865 - 107,572,838 (-)NCBIT2T-CHM13v2.0
Alkbh8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3993,335,151 - 3,391,154 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl93,335,140 - 3,391,154 (+)EnsemblGRCm39 Ensembl
GRCm3893,335,231 - 3,391,154 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl93,335,140 - 3,391,154 (+)EnsemblGRCm38mm10GRCm38
MGSCv3793,335,231 - 3,385,847 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3693,335,231 - 3,385,847 (+)NCBIMGSCv36mm8
Celera3119,303,969 - 119,354,371 (-)NCBICelera
Cytogenetic Map9A1NCBI
cM Map92.02NCBI
Alkbh8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr866,121,402 - 6,198,226 (-)NCBIGRCr8
mRatBN7.26378,779 - 449,382 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6378,100 - 452,165 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6595,173 - 665,789 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06904,464 - 975,082 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06428,856 - 499,473 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0618,877,885 - 18,952,773 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl618,877,907 - 18,949,393 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0628,775,065 - 28,848,187 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47306,104 - 378,289 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17303,328 - 364,955 (+)NCBI
Celera6201,982 - 272,550 (-)NCBICelera
Cytogenetic Map6q11NCBI
Alkbh8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554129,875,905 - 9,923,728 (-)NCBIChiLan1.0ChiLan1.0
ALKBH8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29108,248,602 - 108,314,314 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111109,342,635 - 109,408,238 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011102,390,687 - 102,456,357 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111105,872,588 - 105,937,472 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11105,872,588 - 105,937,472 (-)Ensemblpanpan1.1panPan2
ALKBH8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1524,843,145 - 24,897,906 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl524,833,373 - 25,080,451 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha524,735,966 - 24,816,371 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0524,846,405 - 24,927,699 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl524,872,170 - 24,927,311 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1524,898,995 - 24,979,807 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0524,787,338 - 24,866,870 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0524,849,452 - 24,928,244 (+)NCBIUU_Cfam_GSD_1.0
Alkbh8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494790,412,791 - 90,466,041 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365511,076,117 - 1,123,877 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365511,070,484 - 1,123,427 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALKBH8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl936,077,192 - 36,119,920 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1936,077,004 - 36,119,936 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2940,124,426 - 40,167,572 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ALKBH8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1198,929,404 - 98,996,932 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl198,931,375 - 98,991,732 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604326,950,739 - 27,017,650 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Alkbh8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247842,255,492 - 2,373,824 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ALKBH8
61 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_138775.3(ALKBH8):c.1288-3C>T single nucleotide variant ALKBH8-related condition [RCV003966178]|Intellectual developmental disorder, autosomal recessive 71 [RCV001549114] Chr11:107511039 [GRCh38]
Chr11:107381765 [GRCh37]
Chr11:11q22.3
benign
NM_138775.3(ALKBH8):c.1030+9A>G single nucleotide variant ALKBH8-related condition [RCV003980683]|Intellectual developmental disorder, autosomal recessive 71 [RCV001549115] Chr11:107525432 [GRCh38]
Chr11:107396158 [GRCh37]
Chr11:11q22.3
benign
GRCh38/hg38 11q22.1-25(chr11:100348599-135040246)x3 copy number gain See cases [RCV000053638] Chr11:100348599..135040246 [GRCh38]
Chr11:100219331..134910140 [GRCh37]
Chr11:99724541..134415350 [NCBI36]
Chr11:11q22.1-25
pathogenic
NM_138775.2(ALKBH8):c.1437+2179A>G single nucleotide variant Lung cancer [RCV000109578] Chr11:107508708 [GRCh38]
Chr11:107379434 [GRCh37]
Chr11:11q22.3
uncertain significance
GRCh38/hg38 11q22.3(chr11:107479091-108222532)x1 copy number loss See cases [RCV000136500] Chr11:107479091..108222532 [GRCh38]
Chr11:107349817..108093259 [GRCh37]
Chr11:106855027..107598469 [NCBI36]
Chr11:11q22.3
pathogenic
GRCh38/hg38 11q14.3-22.3(chr11:91086659-109595582)x1 copy number loss See cases [RCV000138038] Chr11:91086659..109595582 [GRCh38]
Chr11:90819827..109466308 [GRCh37]
Chr11:90459475..108971518 [NCBI36]
Chr11:11q14.3-22.3
pathogenic
GRCh37/hg19 11q22.3(chr11:106959465-107537265)x1 copy number loss See cases [RCV000239992] Chr11:106959465..107537265 [GRCh37]
Chr11:11q22.3
uncertain significance
GRCh37/hg19 11q14.2-22.3(chr11:88152458-109414650)x1 copy number loss See cases [RCV000510457] Chr11:88152458..109414650 [GRCh37]
Chr11:11q14.2-22.3
pathogenic
GRCh37/hg19 11q22.3(chr11:106767102-107561488)x3 copy number gain See cases [RCV000511621] Chr11:106767102..107561488 [GRCh37]
Chr11:11q22.3
uncertain significance
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470) copy number gain See cases [RCV000511729] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470)x3 copy number gain See cases [RCV000510881] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
NM_138775.3(ALKBH8):c.443A>G (p.Glu148Gly) single nucleotide variant Inborn genetic diseases [RCV003256997] Chr11:107553903 [GRCh38]
Chr11:107424629 [GRCh37]
Chr11:11q22.3
uncertain significance
GRCh37/hg19 11q13.4-23.3(chr11:71588805-116680918)x3 copy number gain not provided [RCV000683374] Chr11:71588805..116680918 [GRCh37]
Chr11:11q13.4-23.3
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:198510-134934063)x3 copy number gain not provided [RCV000737348] Chr11:198510..134934063 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:70864-134938470)x3 copy number gain not provided [RCV000749874] Chr11:70864..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11q14.1-23.2(chr11:80053454-113316236)x1 copy number loss not provided [RCV000737595] Chr11:80053454..113316236 [GRCh37]
Chr11:11q14.1-23.2
pathogenic
NM_138775.3(ALKBH8):c.313G>C (p.Val105Leu) single nucleotide variant Inborn genetic diseases [RCV003246137] Chr11:107556820 [GRCh38]
Chr11:107427546 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.1820C>G (p.Pro607Arg) single nucleotide variant Intellectual developmental disorder, autosomal recessive 71 [RCV002501496]|not provided [RCV000895282] Chr11:107504833 [GRCh38]
Chr11:107375559 [GRCh37]
Chr11:11q22.3
benign|likely benign
NM_138775.3(ALKBH8):c.1400G>C (p.Cys467Ser) single nucleotide variant ALKBH8-related condition [RCV003968341]|not provided [RCV000907417] Chr11:107510924 [GRCh38]
Chr11:107381650 [GRCh37]
Chr11:11q22.3
benign
GRCh37/hg19 11q22.3-23.3(chr11:104101411-116680918)x1 copy number loss not provided [RCV000848741] Chr11:104101411..116680918 [GRCh37]
Chr11:11q22.3-23.3
pathogenic
NM_138775.3(ALKBH8):c.1651C>T (p.Arg551Ter) single nucleotide variant Intellectual developmental disorder, autosomal recessive 71 [RCV000788045]|not provided [RCV001759480] Chr11:107505002 [GRCh38]
Chr11:107375728 [GRCh37]
Chr11:11q22.3
pathogenic|likely pathogenic|uncertain significance
NM_138775.3(ALKBH8):c.1785del (p.Trp596fs) deletion Intellectual developmental disorder, autosomal recessive 71 [RCV000788046] Chr11:107504868 [GRCh38]
Chr11:107375594 [GRCh37]
Chr11:11q22.3
pathogenic
GRCh37/hg19 11q22.3-23.2(chr11:103320065-114349787)x1 copy number loss not provided [RCV001006439] Chr11:103320065..114349787 [GRCh37]
Chr11:11q22.3-23.2
pathogenic
NM_138775.3(ALKBH8):c.772-72_772-71del microsatellite Intellectual developmental disorder, autosomal recessive 71 [RCV001549009] Chr11:107532477..107532478 [GRCh38]
Chr11:107403203..107403204 [GRCh37]
Chr11:11q22.3
benign
NM_138775.3(ALKBH8):c.720T>C (p.Asp240=) single nucleotide variant ALKBH8-related condition [RCV003983974]|Intellectual developmental disorder, autosomal recessive 71 [RCV001549010] Chr11:107549804 [GRCh38]
Chr11:107420530 [GRCh37]
Chr11:11q22.3
benign
NM_138775.3(ALKBH8):c.878+31T>A single nucleotide variant Intellectual developmental disorder, autosomal recessive 71 [RCV001549116] Chr11:107532269 [GRCh38]
Chr11:107402995 [GRCh37]
Chr11:11q22.3
benign
NM_138775.3(ALKBH8):c.1709C>T (p.Ser570Leu) single nucleotide variant Inborn genetic diseases [RCV003274629] Chr11:107504944 [GRCh38]
Chr11:107375670 [GRCh37]
Chr11:11q22.3
uncertain significance
GRCh37/hg19 11q22.3-23.3(chr11:105699599-114524876)x1 copy number loss not provided [RCV001006445] Chr11:105699599..114524876 [GRCh37]
Chr11:11q22.3-23.3
pathogenic
Single allele deletion Intellectual disability [RCV001293382] Chr11:118359328..118372573 [GRCh37]
Chr11:11p15.3-q23.3
pathogenic
NM_138775.3(ALKBH8):c.960_964del (p.Leu320fs) deletion not provided [RCV001311272] Chr11:107525507..107525511 [GRCh38]
Chr11:107396233..107396237 [GRCh37]
Chr11:11q22.3
likely pathogenic
NC_000011.9:g.(?_94153285)_(111965700_?)del deletion Ataxia-telangiectasia syndrome [RCV001389105] Chr11:94153285..111965700 [GRCh37]
Chr11:11q21-23.1
pathogenic
NM_138775.3(ALKBH8):c.1442G>A (p.Arg481His) single nucleotide variant Inborn genetic diseases [RCV002555507]|Intellectual developmental disorder, autosomal recessive 71 [RCV001420605] Chr11:107505211 [GRCh38]
Chr11:107375937 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.318G>A (p.Val106=) single nucleotide variant not provided [RCV001726856] Chr11:107556815 [GRCh38]
Chr11:107427541 [GRCh37]
Chr11:11q22.3
likely benign
NC_000011.9:g.104288964_134937416dup duplication Distal trisomy 11q [RCV001250234] Chr11:104288964..134937416 [GRCh37]
Chr11:11q22.3-25
pathogenic
NM_138775.3(ALKBH8):c.1105C>T (p.Arg369Trp) single nucleotide variant Intellectual developmental disorder, autosomal recessive 71 [RCV001784139] Chr11:107522481 [GRCh38]
Chr11:107393207 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.1421_1429del (p.His474_Ala477delinsPro) deletion Intellectual developmental disorder, autosomal recessive 71 [RCV001775319] Chr11:107510895..107510903 [GRCh38]
Chr11:107381621..107381629 [GRCh37]
Chr11:11q22.3
likely pathogenic
NM_138775.3(ALKBH8):c.1960C>T (p.Gln654Ter) single nucleotide variant not provided [RCV001769405] Chr11:107504693 [GRCh38]
Chr11:107375419 [GRCh37]
Chr11:11q22.3
uncertain significance
GRCh37/hg19 11q14.1-23.3(chr11:85422071-118022671)x1 copy number loss not provided [RCV001832892] Chr11:85422071..118022671 [GRCh37]
Chr11:11q14.1-23.3
uncertain significance
NM_138775.3(ALKBH8):c.804T>C (p.Ile268=) single nucleotide variant not provided [RCV002211200] Chr11:107532374 [GRCh38]
Chr11:107403100 [GRCh37]
Chr11:11q22.3
likely benign
NM_138775.3(ALKBH8):c.769G>C (p.Glu257Gln) single nucleotide variant not provided [RCV002211201] Chr11:107549755 [GRCh38]
Chr11:107420481 [GRCh37]
Chr11:11q22.3
likely benign
NM_138775.3(ALKBH8):c.844A>T (p.Met282Leu) single nucleotide variant Intellectual developmental disorder, autosomal recessive 71 [RCV002077358] Chr11:107532334 [GRCh38]
Chr11:107403060 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.367+1G>T single nucleotide variant See cases [RCV002252900] Chr11:107556765 [GRCh38]
Chr11:107427491 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.1420C>A (p.His474Asn) single nucleotide variant ALKBH8-related condition [RCV003916444]|not provided [RCV002292841] Chr11:107510904 [GRCh38]
Chr11:107381630 [GRCh37]
Chr11:11q22.3
likely benign
NM_138775.3(ALKBH8):c.830G>A (p.Arg277Gln) single nucleotide variant Inborn genetic diseases [RCV003164414]|not provided [RCV002281276] Chr11:107532348 [GRCh38]
Chr11:107403074 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.1675del (p.Arg559fs) deletion Intellectual developmental disorder, autosomal recessive 71 [RCV002291263] Chr11:107504978 [GRCh38]
Chr11:107375704 [GRCh37]
Chr11:11q22.3
pathogenic
GRCh37/hg19 11p13-q25(chr11:32799481-134938470)x3 copy number gain MISSED ABORTION [RCV002282973] Chr11:32799481..134938470 [GRCh37]
Chr11:11p13-q25
pathogenic
NM_138775.3(ALKBH8):c.982C>T (p.Arg328Ter) single nucleotide variant Intellectual developmental disorder, autosomal recessive 71 [RCV003148510] Chr11:107525489 [GRCh38]
Chr11:107396215 [GRCh37]
Chr11:11q22.3
likely pathogenic
GRCh37/hg19 11q22.1-22.3(chr11:101371503-109306519)x1 copy number loss not provided [RCV002472494] Chr11:101371503..109306519 [GRCh37]
Chr11:11q22.1-22.3
pathogenic
NM_138775.3(ALKBH8):c.1966A>C (p.Asn656His) single nucleotide variant not provided [RCV002300880] Chr11:107504687 [GRCh38]
Chr11:107375413 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.997T>C (p.Phe333Leu) single nucleotide variant Inborn genetic diseases [RCV002841581] Chr11:107525474 [GRCh38]
Chr11:107396200 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.103A>G (p.Ile35Val) single nucleotide variant Inborn genetic diseases [RCV002734156] Chr11:107560791 [GRCh38]
Chr11:107431517 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.1078T>C (p.Phe360Leu) single nucleotide variant Inborn genetic diseases [RCV002864463] Chr11:107522508 [GRCh38]
Chr11:107393234 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.312A>T (p.Glu104Asp) single nucleotide variant Inborn genetic diseases [RCV002849022] Chr11:107556821 [GRCh38]
Chr11:107427547 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.215A>G (p.Asp72Gly) single nucleotide variant Inborn genetic diseases [RCV002693962] Chr11:107556918 [GRCh38]
Chr11:107427644 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.819G>A (p.Met273Ile) single nucleotide variant Inborn genetic diseases [RCV002952303] Chr11:107532359 [GRCh38]
Chr11:107403085 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.212T>A (p.Val71Glu) single nucleotide variant Inborn genetic diseases [RCV002767000] Chr11:107556921 [GRCh38]
Chr11:107427647 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.937A>G (p.Ile313Val) single nucleotide variant Inborn genetic diseases [RCV002789187] Chr11:107525534 [GRCh38]
Chr11:107396260 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.259T>C (p.Tyr87His) single nucleotide variant Inborn genetic diseases [RCV002640773]|not provided [RCV003229106] Chr11:107556874 [GRCh38]
Chr11:107427600 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.722C>T (p.Thr241Ile) single nucleotide variant Inborn genetic diseases [RCV002892296] Chr11:107549802 [GRCh38]
Chr11:107420528 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.337A>T (p.Ile113Phe) single nucleotide variant Inborn genetic diseases [RCV002804689] Chr11:107556796 [GRCh38]
Chr11:107427522 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.1379G>A (p.Arg460His) single nucleotide variant Inborn genetic diseases [RCV002930505] Chr11:107510945 [GRCh38]
Chr11:107381671 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.164G>A (p.Gly55Asp) single nucleotide variant Inborn genetic diseases [RCV002900807] Chr11:107556969 [GRCh38]
Chr11:107427695 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.1100C>A (p.Ala367Asp) single nucleotide variant Inborn genetic diseases [RCV002935212]|not provided [RCV003387547] Chr11:107522486 [GRCh38]
Chr11:107393212 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.497A>C (p.Asn166Thr) single nucleotide variant Inborn genetic diseases [RCV002673748] Chr11:107553849 [GRCh38]
Chr11:107424575 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.1552C>T (p.Leu518Phe) single nucleotide variant ALKBH8-related condition [RCV003926759]|Inborn genetic diseases [RCV002656430] Chr11:107505101 [GRCh38]
Chr11:107375827 [GRCh37]
Chr11:11q22.3
likely benign|uncertain significance
NM_138775.3(ALKBH8):c.1216A>G (p.Ser406Gly) single nucleotide variant Inborn genetic diseases [RCV002652438] Chr11:107522370 [GRCh38]
Chr11:107393096 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.875A>G (p.His292Arg) single nucleotide variant Inborn genetic diseases [RCV002656168] Chr11:107532303 [GRCh38]
Chr11:107403029 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.1700G>A (p.Gly567Glu) single nucleotide variant ALKBH8-related condition [RCV003966295]|not provided [RCV003222741] Chr11:107504953 [GRCh38]
Chr11:107375679 [GRCh37]
Chr11:11q22.3
likely benign
NM_138775.3(ALKBH8):c.345G>C (p.Leu115=) single nucleotide variant not provided [RCV003222742] Chr11:107556788 [GRCh38]
Chr11:107427514 [GRCh37]
Chr11:11q22.3
likely benign
NM_138775.3(ALKBH8):c.1859G>T (p.Ser620Ile) single nucleotide variant Inborn genetic diseases [RCV003178884]|not provided [RCV003227096] Chr11:107504794 [GRCh38]
Chr11:107375520 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.1693G>A (p.Glu565Lys) single nucleotide variant Inborn genetic diseases [RCV003178883]|not provided [RCV003227095] Chr11:107504960 [GRCh38]
Chr11:107375686 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.617G>T (p.Ser206Ile) single nucleotide variant Inborn genetic diseases [RCV003178395] Chr11:107551891 [GRCh38]
Chr11:107422617 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.865C>T (p.Leu289Phe) single nucleotide variant Inborn genetic diseases [RCV003213394] Chr11:107532313 [GRCh38]
Chr11:107403039 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.604G>A (p.Asp202Asn) single nucleotide variant ALKBH8-related condition [RCV003966298]|not provided [RCV003229460] Chr11:107551904 [GRCh38]
Chr11:107422630 [GRCh37]
Chr11:11q22.3
likely benign|uncertain significance
NM_138775.3(ALKBH8):c.829C>T (p.Arg277Trp) single nucleotide variant Inborn genetic diseases [RCV003260398] Chr11:107532349 [GRCh38]
Chr11:107403075 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.132C>G (p.Ser44Arg) single nucleotide variant Inborn genetic diseases [RCV003184229]|not provided [RCV003320930] Chr11:107557001 [GRCh38]
Chr11:107427727 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.1646G>A (p.Gly549Asp) single nucleotide variant Inborn genetic diseases [RCV003210002] Chr11:107505007 [GRCh38]
Chr11:107375733 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.899A>G (p.Asp300Gly) single nucleotide variant not provided [RCV003319097] Chr11:107525572 [GRCh38]
Chr11:107396298 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.170G>A (p.Ser57Asn) single nucleotide variant not provided [RCV003319102] Chr11:107556963 [GRCh38]
Chr11:107427689 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.437C>T (p.Ser146Phe) single nucleotide variant not provided [RCV003387635] Chr11:107553909 [GRCh38]
Chr11:107424635 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.1025A>G (p.Asn342Ser) single nucleotide variant ALKBH8-related condition [RCV003929035]|not provided [RCV003396061] Chr11:107525446 [GRCh38]
Chr11:107396172 [GRCh37]
Chr11:11q22.3
benign|likely benign
NM_138775.3(ALKBH8):c.219T>G (p.Ala73=) single nucleotide variant not provided [RCV003396064] Chr11:107556914 [GRCh38]
Chr11:107427640 [GRCh37]
Chr11:11q22.3
likely benign
Single allele duplication not provided [RCV003448710] Chr11:102134973..134945611 [GRCh37]
Chr11:11q22.2-25
pathogenic
NM_138775.3(ALKBH8):c.1369_1379delinsTCA (p.Val457fs) indel Intellectual developmental disorder, autosomal recessive 71 [RCV003388884] Chr11:107510945..107510955 [GRCh38]
Chr11:107381671..107381681 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.729C>T (p.Ser243=) single nucleotide variant not provided [RCV003396062] Chr11:107549795 [GRCh38]
Chr11:107420521 [GRCh37]
Chr11:11q22.3
likely benign
NM_138775.3(ALKBH8):c.1590G>A (p.Glu530=) single nucleotide variant not provided [RCV003390136] Chr11:107505063 [GRCh38]
Chr11:107375789 [GRCh37]
Chr11:11q22.3
likely benign
NM_138775.3(ALKBH8):c.1432A>G (p.Thr478Ala) single nucleotide variant ALKBH8-related condition [RCV003946631]|not provided [RCV003456790] Chr11:107510892 [GRCh38]
Chr11:107381618 [GRCh37]
Chr11:11q22.3
benign
NM_138775.3(ALKBH8):c.459G>A (p.Leu153=) single nucleotide variant not provided [RCV003396063] Chr11:107553887 [GRCh38]
Chr11:107424613 [GRCh37]
Chr11:11q22.3
likely benign
NM_138775.3(ALKBH8):c.1712G>A (p.Arg571Lys) single nucleotide variant ALKBH8-related condition [RCV003939725] Chr11:107504941 [GRCh38]
Chr11:107375667 [GRCh37]
Chr11:11q22.3
benign
NM_138775.3(ALKBH8):c.146A>G (p.Asn49Ser) single nucleotide variant not provided [RCV003884900] Chr11:107556987 [GRCh38]
Chr11:107427713 [GRCh37]
Chr11:11q22.3
benign
NM_138775.3(ALKBH8):c.1957G>T (p.Asp653Tyr) single nucleotide variant ALKBH8-related condition [RCV003919770] Chr11:107504696 [GRCh38]
Chr11:107375422 [GRCh37]
Chr11:11q22.3
benign
NM_138775.3(ALKBH8):c.368-5C>T single nucleotide variant ALKBH8-related condition [RCV003919758] Chr11:107553983 [GRCh38]
Chr11:107424709 [GRCh37]
Chr11:11q22.3
benign
NM_138775.3(ALKBH8):c.1834G>T (p.Gly612Cys) single nucleotide variant ALKBH8-related condition [RCV003937070] Chr11:107504819 [GRCh38]
Chr11:107375545 [GRCh37]
Chr11:11q22.3
benign
NM_138775.3(ALKBH8):c.-6-5dup duplication ALKBH8-related condition [RCV003929814] Chr11:107560903..107560904 [GRCh38]
Chr11:107431629..107431630 [GRCh37]
Chr11:11q22.3
likely benign
NM_138775.3(ALKBH8):c.1892G>A (p.Arg631His) single nucleotide variant ALKBH8-related condition [RCV003933985] Chr11:107504761 [GRCh38]
Chr11:107375487 [GRCh37]
Chr11:11q22.3
likely benign
NM_138775.3(ALKBH8):c.1288-10T>C single nucleotide variant ALKBH8-related condition [RCV003969778] Chr11:107511046 [GRCh38]
Chr11:107381772 [GRCh37]
Chr11:11q22.3
likely benign
NM_138775.3(ALKBH8):c.1676G>A (p.Arg559His) single nucleotide variant ALKBH8-related condition [RCV003959067] Chr11:107504977 [GRCh38]
Chr11:107375703 [GRCh37]
Chr11:11q22.3
likely benign
NM_138775.3(ALKBH8):c.886T>G (p.Cys296Gly) single nucleotide variant ALKBH8-related condition [RCV003971407] Chr11:107525585 [GRCh38]
Chr11:107396311 [GRCh37]
Chr11:11q22.3
benign
NM_138775.3(ALKBH8):c.1874G>A (p.Arg625His) single nucleotide variant Intellectual developmental disorder, autosomal recessive 71 [RCV003988670] Chr11:107504779 [GRCh38]
Chr11:107375505 [GRCh37]
Chr11:11q22.3
uncertain significance
NM_138775.3(ALKBH8):c.243G>C (p.Pro81=) single nucleotide variant ALKBH8-related condition [RCV003916927] Chr11:107556890 [GRCh38]
Chr11:107427616 [GRCh37]
Chr11:11q22.3
benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1949
Count of miRNA genes:864
Interacting mature miRNAs:994
Transcripts:ENST00000260318, ENST00000389568, ENST00000393100, ENST00000417449, ENST00000428149, ENST00000429370, ENST00000530933
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH93706  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711107,373,657 - 107,373,811UniSTSGRCh37
Build 3611106,878,867 - 106,879,021RGDNCBI36
Celera11104,528,474 - 104,528,628RGD
Cytogenetic Map11q22.3UniSTS
HuRef11103,299,194 - 103,299,348UniSTS
GeneMap99-GB4 RH Map11362.08UniSTS
D11S3957  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711107,373,480 - 107,373,569UniSTSGRCh37
Build 3611106,878,690 - 106,878,779RGDNCBI36
Celera11104,528,297 - 104,528,386RGD
Cytogenetic Map11q22.3UniSTS
HuRef11103,299,017 - 103,299,106UniSTS
G66900  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711107,401,463 - 107,401,737UniSTSGRCh37
Build 3611106,906,673 - 106,906,947RGDNCBI36
Celera11104,556,276 - 104,556,550RGD
Cytogenetic Map11q22.3UniSTS
HuRef11103,326,996 - 103,327,270UniSTS
D11S4571  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711107,438,098 - 107,438,289UniSTSGRCh37
Build 3611106,943,308 - 106,943,499RGDNCBI36
Celera11104,592,904 - 104,593,095RGD
Cytogenetic Map11q22.3UniSTS
HuRef11103,363,496 - 103,363,687UniSTS
G17588  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711107,382,215 - 107,382,309UniSTSGRCh37
Build 3611106,887,425 - 106,887,519RGDNCBI36
Celera11104,537,033 - 104,537,127RGD
Cytogenetic Map11q22.3UniSTS
HuRef11103,307,753 - 103,307,847UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 86 42 43 15 586 18 273 40 123 55 157 180 5 5 52 1
Low 2351 2524 1682 609 989 447 4083 2108 3597 363 1302 1430 169 1 1199 2736 4 2
Below cutoff 1 424 1 375 49 14 1 1 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001301010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_138775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_165421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_165422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_165423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_165424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_165425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_165426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005271728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005271729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047427870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047427871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054370504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054370505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054370506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001748035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB218768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF086489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK095523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK298800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP001823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX649085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000260318   ⟹   ENSP00000260318
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11107,504,598 - 107,565,701 (-)Ensembl
RefSeq Acc Id: ENST00000389568   ⟹   ENSP00000374219
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11107,504,595 - 107,565,518 (-)Ensembl
RefSeq Acc Id: ENST00000393100   ⟹   ENSP00000376812
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11107,532,314 - 107,565,734 (-)Ensembl
RefSeq Acc Id: ENST00000417449   ⟹   ENSP00000397673
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11107,504,658 - 107,565,742 (-)Ensembl
RefSeq Acc Id: ENST00000428149   ⟹   ENSP00000415885
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11107,502,727 - 107,565,735 (-)Ensembl
RefSeq Acc Id: ENST00000429370   ⟹   ENSP00000391225
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11107,503,029 - 107,565,735 (-)Ensembl
RefSeq Acc Id: ENST00000530933
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11107,553,857 - 107,565,733 (-)Ensembl
RefSeq Acc Id: NM_001301010   ⟹   NP_001287939
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811107,502,728 - 107,565,735 (-)NCBI
CHM1_111107,256,482 - 107,319,496 (-)NCBI
T2T-CHM13v2.011107,509,866 - 107,572,838 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001378133   ⟹   NP_001365062
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811107,502,727 - 107,565,735 (-)NCBI
T2T-CHM13v2.011107,509,865 - 107,572,838 (-)NCBI
Sequence:
RefSeq Acc Id: NM_138775   ⟹   NP_620130
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811107,502,727 - 107,565,735 (-)NCBI
GRCh3711107,373,453 - 107,436,468 (-)NCBI
Build 3611106,880,541 - 106,941,637 (-)NCBI Archive
Celera11104,528,270 - 104,591,267 (-)RGD
HuRef11103,298,990 - 103,361,859 (-)ENTREZGENE
CHM1_111107,256,482 - 107,319,496 (-)NCBI
T2T-CHM13v2.011107,509,865 - 107,572,838 (-)NCBI
Sequence:
RefSeq Acc Id: NR_165421
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811107,502,727 - 107,565,735 (-)NCBI
T2T-CHM13v2.011107,509,865 - 107,572,838 (-)NCBI
Sequence:
RefSeq Acc Id: NR_165422
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811107,502,727 - 107,565,735 (-)NCBI
T2T-CHM13v2.011107,509,865 - 107,572,838 (-)NCBI
Sequence:
RefSeq Acc Id: NR_165423
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811107,502,727 - 107,565,735 (-)NCBI
T2T-CHM13v2.011107,509,865 - 107,572,838 (-)NCBI
Sequence:
RefSeq Acc Id: NR_165424
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811107,502,727 - 107,565,735 (-)NCBI
T2T-CHM13v2.011107,509,865 - 107,572,838 (-)NCBI
Sequence:
RefSeq Acc Id: NR_165425
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811107,502,727 - 107,565,735 (-)NCBI
T2T-CHM13v2.011107,509,865 - 107,572,838 (-)NCBI
Sequence:
RefSeq Acc Id: NR_165426
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811107,502,727 - 107,565,735 (-)NCBI
T2T-CHM13v2.011107,509,865 - 107,572,838 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017018557   ⟹   XP_016874046
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811107,522,566 - 107,565,735 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047427870   ⟹   XP_047283826
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811107,502,727 - 107,556,854 (-)NCBI
RefSeq Acc Id: XM_047427871   ⟹   XP_047283827
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811107,510,924 - 107,565,735 (-)NCBI
RefSeq Acc Id: XM_054370504   ⟹   XP_054226479
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.011107,509,865 - 107,563,970 (-)NCBI
RefSeq Acc Id: XM_054370505   ⟹   XP_054226480
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.011107,529,709 - 107,572,838 (-)NCBI
RefSeq Acc Id: XM_054370506   ⟹   XP_054226481
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.011107,518,063 - 107,572,838 (-)NCBI
RefSeq Acc Id: NP_620130   ⟸   NM_138775
- Peptide Label: isoform 1
- UniProtKB: B4DEF6 (UniProtKB/Swiss-Prot),   B1Q2M0 (UniProtKB/Swiss-Prot),   Q8N989 (UniProtKB/Swiss-Prot),   Q96BT7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001287939   ⟸   NM_001301010
- Peptide Label: isoform 1
- UniProtKB: Q96BT7 (UniProtKB/Swiss-Prot),   B4DEF6 (UniProtKB/Swiss-Prot),   B1Q2M0 (UniProtKB/Swiss-Prot),   Q8N989 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016874046   ⟸   XM_017018557
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001365062   ⟸   NM_001378133
- Peptide Label: isoform 3
RefSeq Acc Id: ENSP00000415885   ⟸   ENST00000428149
RefSeq Acc Id: ENSP00000374219   ⟸   ENST00000389568
RefSeq Acc Id: ENSP00000391225   ⟸   ENST00000429370
RefSeq Acc Id: ENSP00000397673   ⟸   ENST00000417449
RefSeq Acc Id: ENSP00000260318   ⟸   ENST00000260318
RefSeq Acc Id: ENSP00000376812   ⟸   ENST00000393100
RefSeq Acc Id: XP_047283826   ⟸   XM_047427870
- Peptide Label: isoform X1
- UniProtKB: B4DQH3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047283827   ⟸   XM_047427871
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054226479   ⟸   XM_054370504
- Peptide Label: isoform X1
- UniProtKB: B4DQH3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054226481   ⟸   XM_054370506
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054226480   ⟸   XM_054370505
- Peptide Label: isoform X2
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96BT7-F1-model_v2 AlphaFold Q96BT7 1-664 view protein structure

Promoters
RGD ID:6788453
Promoter ID:HG_KWN:14099
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000393100,   OTTHUMT00000347071,   OTTHUMT00000347072,   OTTHUMT00000347073,   OTTHUMT00000347074
Position:
Human AssemblyChrPosition (strand)Source
Build 3611106,941,251 - 106,941,751 (-)MPROMDB
RGD ID:7221991
Promoter ID:EPDNEW_H16741
Type:initiation region
Name:ALKBH8_1
Description:alkB homolog 8, tRNA methyltransferase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811107,565,735 - 107,565,795EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:25189 AgrOrtholog
COSMIC ALKBH8 COSMIC
Ensembl Genes ENSG00000137760 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000260318.6 UniProtKB/Swiss-Prot
  ENST00000389568.7 UniProtKB/Swiss-Prot
  ENST00000393100.3 UniProtKB/TrEMBL
  ENST00000417449 ENTREZGENE
  ENST00000417449.6 UniProtKB/Swiss-Prot
  ENST00000428149 ENTREZGENE
  ENST00000428149.7 UniProtKB/Swiss-Prot
  ENST00000429370.5 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.1520 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000137760 GTEx
HGNC ID HGNC:25189 ENTREZGENE
Human Proteome Map ALKBH8 Human Proteome Map
InterPro AlkB-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AlkB_hom8_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ALKBH8_RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Methyltransf_11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Oxoglu/Fe-dep_dioxygenase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM-dependent_MTases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:91801 UniProtKB/Swiss-Prot
NCBI Gene 91801 ENTREZGENE
OMIM 613306 OMIM
PANTHER ALKYLATED DNA REPAIR PROTEIN ALKB HOMOLOG 8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 2OG-FeII_Oxy_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF1891 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Methyltransf_11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA143485296 PharmGKB
PROSITE FE2OG_OXY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Clavaminate synthase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S-adenosyl-L-methionine-dependent methyltransferases UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt ALKB8_HUMAN UniProtKB/Swiss-Prot
  B1Q2M0 ENTREZGENE
  B4DEF6 ENTREZGENE
  B4DQH3 ENTREZGENE, UniProtKB/TrEMBL
  C9JQN2_HUMAN UniProtKB/TrEMBL
  Q8N989 ENTREZGENE
  Q96BT7 ENTREZGENE
UniProt Secondary B1Q2M0 UniProtKB/Swiss-Prot
  B4DEF6 UniProtKB/Swiss-Prot
  Q8N989 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-06-30 ALKBH8  alkB homolog 8, tRNA methyltransferase    alkB, alkylation repair homolog 8 (E. coli)  Symbol and/or name change 5135510 APPROVED