RGPD5 (RANBP2 like and GRIP domain containing 5) - Rat Genome Database
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Gene: RGPD5 (RANBP2 like and GRIP domain containing 5) Homo sapiens
Analyze
No known orthologs.
Symbol: RGPD5
Name: RANBP2 like and GRIP domain containing 5
RGD ID: 1601953
HGNC Page HGNC
Description: Predicted to contribute to GTPase activator activity. Predicted to be involved in NLS-bearing protein import into nucleus. Predicted to localize to cytoplasm and nuclear pore.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: BS-63; BS63; DKFZp686I1842; epididymis luminal protein 161; HEL161; ran-binding protein 2-like 1; ran-binding protein 2-like 1/2; ran-binding protein 2-like 2; ranBP2-like 1; ranBP2-like 1/2; ranBP2-like 2; RANBP2-like and GRIP domain containing 5; RANBP2-like and GRIP domain-containing protein 5; RANBP2-like and GRIP domain-containing protein 5/6; RANBP2-like and GRIP domain-containing protein 6; ranBP2L1; ranBP2L2; RGP5; RGPD6; sperm membrane protein BS-63
RGD Orthologs
Alliance Genes
More Info homologs ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2109,792,758 - 109,857,705 (+)EnsemblGRCh38hg38GRCh38
GRCh382109,760,594 - 109,857,705 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372110,550,335 - 110,615,268 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362109,907,624 - 109,972,552 (+)NCBINCBI36hg18NCBI36
Cytogenetic Map2q13NCBI
HuRef2102,906,535 - 103,016,202 (+)NCBIHuRef
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
nuclear pore  (IBA)

Molecular Function

References

Additional References at PubMed
PMID:9480752   PMID:10101573   PMID:11230166   PMID:11774384   PMID:12905863   PMID:14702039   PMID:15710750   PMID:15815621   PMID:18187620   PMID:19615732   PMID:20360068   PMID:21873635  
PMID:21988832   PMID:25963833   PMID:26186194   PMID:26344197   PMID:26496610   PMID:28514442   PMID:29117863  


Genomics

Position Markers
GDB:314949  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map5q21UniSTS
Cytogenetic Map7p15-p14UniSTS
Cytogenetic Map20q11.2-q13.2UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map19q13.13UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map14q13.2UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map12q14.2UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map17pUniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map8q24.3UniSTS
GDB:434012  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map4q32.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map19q13.13UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map2q31.2-q33.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map5q21UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map9q13-q21UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map17q24UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map2q33-q34UniSTS
Cytogenetic Map17q25.2UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map7q21.3UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map1p21.3-p13.1UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map16p13.12UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map6p22.3-p22.1UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map12p13.1UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map8q21.11UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic MapXp11.22UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map1q31-q41UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map6q22-q23UniSTS
Cytogenetic Map1q24-q25.3UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map8q24.22UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map1pter-q31.3UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map16p13UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map4p13UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p12.1UniSTS
Cytogenetic Map10p11.1UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map2q11.2-q12UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p21.32UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map11q12.2UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic Map1p36-p35UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map12q23UniSTS
Cytogenetic Map4q13UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic MapXq21.3UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map6p12.3-p11.2UniSTS
Cytogenetic Map6q27UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map4p16UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map1p31UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map6pter-p12.1UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map14q31UniSTS
RH16188  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2q13UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map2p11.2UniSTS
WI-15297  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2q13UniSTS
GeneMap99-GB4 RH Map2389.3UniSTS
Whitehead-RH Map2623.4UniSTS
D2S2897  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2q13UniSTS
Cytogenetic Map2q12.3UniSTS
D2S1552E  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2q13UniSTS
Cytogenetic Map2q12.3UniSTS
RH35930  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2q13UniSTS
Cytogenetic Map2q12.3UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2105
Count of miRNA genes:1049
Interacting mature miRNAs:1279
Transcripts:ENST00000016946, ENST00000272454, ENST00000393283, ENST00000413468, ENST00000430736, ENST00000432606, ENST00000441344, ENST00000472794, ENST00000477523, ENST00000482778, ENST00000493394, ENST00000495473, ENST00000495582
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 2
Low 1799 1585 1208 264 420 141 3330 1078 2108 38 1061 1192 123 1156 2112
Below cutoff 3863 5413 2590 673 1975 393 7354 4182 6836 224 2015 2150 280 2016 5187

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000016946   ⟹   ENSP00000016946
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2109,794,305 - 109,857,705 (+)Ensembl
RefSeq Acc Id: ENST00000272454   ⟹   ENSP00000272454
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2109,794,274 - 109,832,963 (+)Ensembl
RefSeq Acc Id: ENST00000393283   ⟹   ENSP00000376962
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2109,792,758 - 109,833,019 (+)Ensembl
RefSeq Acc Id: ENST00000413468   ⟹   ENSP00000409406
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2109,804,072 - 109,835,916 (+)Ensembl
RefSeq Acc Id: ENST00000430736   ⟹   ENSP00000392556
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2109,794,305 - 109,804,131 (+)Ensembl
RefSeq Acc Id: ENST00000432606   ⟹   ENSP00000400797
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2109,794,685 - 109,803,539 (+)Ensembl
RefSeq Acc Id: ENST00000441344   ⟹   ENSP00000411548
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2109,794,400 - 109,808,311 (+)Ensembl
RefSeq Acc Id: ENST00000472794
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2109,803,475 - 109,804,555 (+)Ensembl
RefSeq Acc Id: ENST00000477523
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2109,840,377 - 109,857,695 (+)Ensembl
RefSeq Acc Id: ENST00000482778
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2109,803,312 - 109,804,151 (+)Ensembl
RefSeq Acc Id: ENST00000493394
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2109,819,178 - 109,824,365 (+)Ensembl
RefSeq Acc Id: ENST00000495473
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2109,808,237 - 109,813,771 (+)Ensembl
RefSeq Acc Id: ENST00000495582
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl2109,837,883 - 109,838,993 (+)Ensembl
RefSeq Acc Id: NM_005054   ⟹   NP_005045
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382109,794,305 - 109,857,705 (+)NCBI
GRCh372110,550,335 - 110,615,268 (+)NCBI
Build 362109,909,255 - 109,972,552 (+)NCBI Archive
Sequence:
RefSeq Acc Id: NM_032260   ⟹   NP_115636
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382109,792,758 - 109,833,019 (+)NCBI
GRCh372110,550,335 - 110,615,268 (+)NCBI
Build 362109,907,624 - 109,947,885 (+)NCBI Archive
Sequence:
RefSeq Acc Id: XM_006712794   ⟹   XP_006712857
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382109,760,594 - 109,857,691 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017005080   ⟹   XP_016860569
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382109,794,908 - 109,857,691 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017005081   ⟹   XP_016860570
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382109,760,594 - 109,841,034 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_115636   ⟸   NM_032260
- Peptide Label: isoform 2
- UniProtKB: Q99666 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_005045   ⟸   NM_005054
- Peptide Label: isoform 1
- UniProtKB: Q99666 (UniProtKB/Swiss-Prot),   V9HWE4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006712857   ⟸   XM_006712794
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_016860570   ⟸   XM_017005081
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_016860569   ⟸   XM_017005080
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSP00000016946   ⟸   ENST00000016946
RefSeq Acc Id: ENSP00000409406   ⟸   ENST00000413468
RefSeq Acc Id: ENSP00000411548   ⟸   ENST00000441344
RefSeq Acc Id: ENSP00000272454   ⟸   ENST00000272454
RefSeq Acc Id: ENSP00000392556   ⟸   ENST00000430736
RefSeq Acc Id: ENSP00000400797   ⟸   ENST00000432606
RefSeq Acc Id: ENSP00000376962   ⟸   ENST00000393283
Protein Domains
GRIP   RanBD1   TPR_REGION

Promoters
RGD ID:6861302
Promoter ID:EPDNEW_H3816
Type:initiation region
Name:RGPD5_2
Description:RANBP2-like and GRIP domain containing 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H3817  EPDNEW_H3818  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382109,760,698 - 109,760,758EPDNEW
RGD ID:6861304
Promoter ID:EPDNEW_H3817
Type:initiation region
Name:RGPD5_1
Description:RANBP2-like and GRIP domain containing 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H3816  EPDNEW_H3818  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382109,794,305 - 109,794,365EPDNEW
RGD ID:6861306
Promoter ID:EPDNEW_H3818
Type:initiation region
Name:RGPD5_3
Description:RANBP2-like and GRIP domain containing 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H3816  EPDNEW_H3817  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382109,837,879 - 109,837,939EPDNEW

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 2q12.2-13(chr2:106696282-110223328)x3 copy number gain See cases [RCV000053141] Chr2:106696282..110223328 [GRCh38]
Chr2:107312738..110980905 [GRCh37]
Chr2:106679170..110338194 [NCBI36]
Chr2:2q12.2-13
uncertain significance
GRCh38/hg38 2q11.2-13(chr2:97672522-110211318)x3 copy number gain See cases [RCV000052947] Chr2:97672522..110211318 [GRCh38]
Chr2:98288985..110968895 [GRCh37]
Chr2:97655417..110326184 [NCBI36]
Chr2:2q11.2-13
pathogenic
GRCh38/hg38 2q13(chr2:109623720-110207160)x1 copy number loss See cases [RCV000133772] Chr2:109623720..110207160 [GRCh38]
Chr2:110381297..110964737 [GRCh37]
Chr2:109738586..110322026 [NCBI36]
Chr2:2q13
benign
GRCh38/hg38 2q13(chr2:108719125-110611314)x3 copy number gain See cases [RCV000137361] Chr2:108719125..110611314 [GRCh38]
Chr2:109335581..111368891 [GRCh37]
Chr2:108702013..111085360 [NCBI36]
Chr2:2q13
uncertain significance
GRCh38/hg38 2q11.2-13(chr2:101710825-110791418)x3 copy number gain See cases [RCV000138645] Chr2:101710825..110791418 [GRCh38]
Chr2:102327287..111548995 [GRCh37]
Chr2:101693719..111265466 [NCBI36]
Chr2:2q11.2-13
pathogenic
GRCh38/hg38 2q12.2-13(chr2:106516472-110576905)x3 copy number gain See cases [RCV000139569] Chr2:106516472..110576905 [GRCh38]
Chr2:107132928..111334482 [GRCh37]
Chr2:106499360..110857227 [NCBI36]
Chr2:2q12.2-13
uncertain significance
GRCh38/hg38 2q12.2-14.1(chr2:106428663-112379067)x3 copy number gain See cases [RCV000140834] Chr2:106428663..112379067 [GRCh38]
Chr2:107045119..113136644 [GRCh37]
Chr2:106411551..112853115 [NCBI36]
Chr2:2q12.2-14.1
uncertain significance
GRCh38/hg38 2q11.1-13(chr2:94678532-110602409)x3 copy number gain See cases [RCV000141075] Chr2:94678532..110602409 [GRCh38]
Chr2:95344257..111359986 [GRCh37]
Chr2:94707984..111076455 [NCBI36]
Chr2:2q11.1-13
pathogenic
GRCh37/hg19 2q13(chr2:110504318-110973419)x1 copy number loss See cases [RCV000449066] Chr2:110504318..110973419 [GRCh37]
Chr2:2q13
uncertain significance
GRCh37/hg19 2q12.3-13(chr2:109300532-110862536)x3 copy number gain not provided [RCV000762743] Chr2:109300532..110862536 [GRCh37]
Chr2:2q12.3-13
uncertain significance
Single allele duplication Autism spectrum disorder [RCV000208724] Chr2:109696399..110327308 [GRCh38]
Chr2:110453976..111084885 [GRCh37]
Chr2:2q13
uncertain significance
GRCh37/hg19 2q12.2-14.1(chr2:106423310-115054828)x1 copy number loss See cases [RCV000240053] Chr2:106423310..115054828 [GRCh37]
Chr2:2q12.2-14.1
pathogenic
GRCh37/hg19 2q12.3-14.3(chr2:109798247-125658380)x1 copy number loss See cases [RCV000240485] Chr2:109798247..125658380 [GRCh37]
Chr2:2q12.3-14.3
pathogenic
GRCh37/hg19 2q12.3-14.1(chr2:109556627-117570152)x1 copy number loss See cases [RCV000240490] Chr2:109556627..117570152 [GRCh37]
Chr2:2q12.3-14.1
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:14238-243048760)x3 copy number gain not provided [RCV000752802] Chr2:14238..243048760 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q13(chr2:110504318-110983418)x1 copy number loss See cases [RCV000446820] Chr2:110504318..110983418 [GRCh37]
Chr2:2q13
uncertain significance
GRCh37/hg19 2q11.1-13(chr2:95327499-111370025)x4 copy number gain See cases [RCV000446842] Chr2:95327499..111370025 [GRCh37]
Chr2:2q11.1-13
pathogenic
GRCh37/hg19 2q12.3-13(chr2:108526025-110876776)x3 copy number gain See cases [RCV000446992] Chr2:108526025..110876776 [GRCh37]
Chr2:2q12.3-13
uncertain significance
GRCh37/hg19 2q13(chr2:110496601-110983418)x3 copy number gain See cases [RCV000446128] Chr2:110496601..110983418 [GRCh37]
Chr2:2q13
uncertain significance
GRCh37/hg19 2q13(chr2:110497990-111400649)x3 copy number gain See cases [RCV000447601] Chr2:110497990..111400649 [GRCh37]
Chr2:2q13
likely benign
GRCh37/hg19 2q13(chr2:110504318-111365996)x1 copy number loss See cases [RCV000445912] Chr2:110504318..111365996 [GRCh37]
Chr2:2q13
conflicting data from submitters
GRCh37/hg19 2q13(chr2:110504318-111370025)x3 copy number gain See cases [RCV000446018] Chr2:110504318..111370025 [GRCh37]
Chr2:2q13
uncertain significance
GRCh37/hg19 2q13(chr2:110504318-110980108)x1 copy number loss See cases [RCV000448720] Chr2:110504318..110980108 [GRCh37]
Chr2:2q13
likely pathogenic
GRCh37/hg19 2q13(chr2:110498141-110983418)x3 copy number gain See cases [RCV000448038] Chr2:110498141..110983418 [GRCh37]
Chr2:2q13
uncertain significance
GRCh37/hg19 2q13(chr2:110504318-111365996)x3 copy number gain See cases [RCV000448330] Chr2:110504318..111365996 [GRCh37]
Chr2:2q13
uncertain significance
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384) copy number gain See cases [RCV000512056] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
Single allele inversion not provided [RCV000714264] Chr2:40608411..146900718 [GRCh37]
Chr2:2p22.1-q22.3
likely pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384)x3 copy number gain See cases [RCV000511212] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q12.1-24.3(chr2:104172062-168223828)x1 copy number loss PARP Inhibitor response [RCV000626436] Chr2:104172062..168223828 [GRCh37]
Chr2:2q12.1-24.3
drug response
Single allele duplication not provided [RCV000678012] Chr2:107096423..112235727 [GRCh37]
Chr2:2q12.2-13
likely pathogenic
GRCh37/hg19 2q13(chr2:110504318-111622976)x3 copy number gain not provided [RCV000682117] Chr2:110504318..111622976 [GRCh37]
Chr2:2q13
likely benign
GRCh37/hg19 2q12.2-13(chr2:107020782-111365996)x1 copy number loss not provided [RCV000682152] Chr2:107020782..111365996 [GRCh37]
Chr2:2q12.2-13
likely pathogenic
GRCh37/hg19 2q11.1-13(chr2:96353030-114045463)x3 copy number gain not provided [RCV000682168] Chr2:96353030..114045463 [GRCh37]
Chr2:2q11.1-13
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:15672-243101834)x3 copy number gain not provided [RCV000752804] Chr2:15672..243101834 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q13(chr2:110508213-110749788)x1 copy number loss not provided [RCV000753080] Chr2:110508213..110749788 [GRCh37]
Chr2:2q13
benign
GRCh37/hg19 2q12.2-13(chr2:107029680-113187742)x1 copy number loss not provided [RCV001259645] Chr2:107029680..113187742 [GRCh37]
Chr2:2q12.2-13
pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:32418 AgrOrtholog
COSMIC RGPD5 COSMIC
Ensembl Genes ENSG00000015568 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000169629 UniProtKB/TrEMBL
  ENSG00000183054 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000016946 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000272454 UniProtKB/Swiss-Prot
  ENSP00000330023 UniProtKB/Swiss-Prot
  ENSP00000330842 UniProtKB/Swiss-Prot
  ENSP00000376962 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000392556 UniProtKB/TrEMBL
  ENSP00000400797 UniProtKB/TrEMBL
  ENSP00000409406 UniProtKB/TrEMBL
  ENSP00000409424 UniProtKB/TrEMBL
  ENSP00000411548 UniProtKB/TrEMBL
  ENSP00000418549 UniProtKB/TrEMBL
  ENSP00000429923 UniProtKB/TrEMBL
  ENSP00000430052 UniProtKB/TrEMBL
Ensembl Transcript ENST00000016946 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000272454 UniProtKB/Swiss-Prot
  ENST00000329516 UniProtKB/Swiss-Prot
  ENST00000330331 UniProtKB/Swiss-Prot
  ENST00000393283 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000413468 UniProtKB/TrEMBL
  ENST00000430736 UniProtKB/TrEMBL
  ENST00000432606 UniProtKB/TrEMBL
  ENST00000441344 UniProtKB/TrEMBL
  ENST00000455695 UniProtKB/TrEMBL
  ENST00000484024 UniProtKB/TrEMBL
  ENST00000496537 UniProtKB/TrEMBL
  ENST00000522286 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000015568 GTEx
  ENSG00000169629 GTEx
  ENSG00000183054 GTEx
HGNC ID HGNC:32418 ENTREZGENE
Human Proteome Map RGPD5 Human Proteome Map
InterPro GCC2_Rab_bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GRIP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ran_bind_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-contain_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_1 UniProtKB/TrEMBL
  TPR_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:729540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  hsa:84220 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 84220 ENTREZGENE
OMIM 612708 OMIM
Pfam GRIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab_bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ran_BP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_1 UniProtKB/TrEMBL
PharmGKB PA142671074 PharmGKB
PROSITE GRIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RANBD1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Grip UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RanBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Hs.469630 ENTREZGENE
UniProt C9J1P2_HUMAN UniProtKB/TrEMBL
  C9J1W9_HUMAN UniProtKB/TrEMBL
  C9J6W1_HUMAN UniProtKB/TrEMBL
  H0YBN8_HUMAN UniProtKB/TrEMBL
  Q99666 ENTREZGENE, UniProtKB/Swiss-Prot
  V9HWE4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q53QN2 UniProtKB/Swiss-Prot
  Q53T03 UniProtKB/Swiss-Prot
  Q59GM7 UniProtKB/Swiss-Prot
  Q9H0B2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-19 RGPD5  RANBP2 like and GRIP domain containing 5  RGPD5  RANBP2-like and GRIP domain containing 5  Symbol and/or name change 5135510 APPROVED