CEACAM20 (CEA cell adhesion molecule 20) - Rat Genome Database

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Gene: CEACAM20 (CEA cell adhesion molecule 20) Homo sapiens
Analyze
Symbol: CEACAM20
Name: CEA cell adhesion molecule 20
RGD ID: 1601830
HGNC Page HGNC:24879
Description: Predicted to enable protein tyrosine kinase binding activity. Predicted to be involved in regulation of immune system process and signal transduction. Predicted to be located in apical plasma membrane and microvillus membrane. Predicted to be active in cell surface and plasma membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: carcinoembryonic antigen related cell adhesion molecule 20; carcinoembryonic antigen-related cell adhesion molecule 20; GPAD9366; UNQ9366
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381944,506,159 - 44,529,675 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1944,501,677 - 44,529,788 (-)EnsemblGRCh38hg38GRCh38
GRCh371945,010,211 - 45,033,698 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361949,702,051 - 49,725,388 (-)NCBINCBI36Build 36hg18NCBI36
Celera1941,814,195 - 41,837,529 (-)NCBICelera
Cytogenetic Map19q13.31NCBI
HuRef1941,442,473 - 41,465,781 (-)NCBIHuRef
CHM1_11945,012,109 - 45,035,475 (-)NCBICHM1_1
T2T-CHM13v2.01947,331,670 - 47,355,129 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12975309   PMID:16139472   PMID:20379614   PMID:21873635   PMID:23358633   PMID:28659570  


Genomics

Comparative Map Data
CEACAM20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381944,506,159 - 44,529,675 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1944,501,677 - 44,529,788 (-)EnsemblGRCh38hg38GRCh38
GRCh371945,010,211 - 45,033,698 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361949,702,051 - 49,725,388 (-)NCBINCBI36Build 36hg18NCBI36
Celera1941,814,195 - 41,837,529 (-)NCBICelera
Cytogenetic Map19q13.31NCBI
HuRef1941,442,473 - 41,465,781 (-)NCBIHuRef
CHM1_11945,012,109 - 45,035,475 (-)NCBICHM1_1
T2T-CHM13v2.01947,331,670 - 47,355,129 (-)NCBIT2T-CHM13v2.0
Ceacam20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39719,699,277 - 19,725,038 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl719,699,337 - 19,725,029 (+)EnsemblGRCm39 Ensembl
GRCm38719,965,352 - 19,991,113 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,965,412 - 19,991,104 (+)EnsemblGRCm38mm10GRCm38
MGSCv37720,550,761 - 20,576,462 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36719,123,953 - 19,149,635 (+)NCBIMGSCv36mm8
Celera717,372,018 - 17,398,995 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.96NCBI
Ceacam20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,750,010 - 88,771,679 (+)NCBIGRCr8
mRatBN7.2179,622,077 - 79,643,782 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,622,077 - 79,643,782 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx185,015,491 - 85,037,243 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0193,565,462 - 93,587,190 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0186,770,608 - 86,793,057 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0180,880,856 - 80,912,082 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,880,856 - 80,912,082 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0182,145,568 - 82,178,160 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4179,275,467 - 79,297,252 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1179,353,611 - 79,375,542 (+)NCBI
Celera174,078,931 - 74,099,730 (+)NCBICelera
Cytogenetic Map1q21NCBI
Ceacam20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555551,752,080 - 1,769,846 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555551,752,634 - 1,769,148 (-)NCBIChiLan1.0ChiLan1.0
CEACAM20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22050,664,333 - 50,693,575 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11952,536,403 - 52,565,674 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01941,452,476 - 41,481,288 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11950,057,938 - 50,085,519 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1950,058,021 - 50,085,252 (-)Ensemblpanpan1.1panPan2
CEACAM20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11110,744,921 - 110,829,413 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1110,805,089 - 110,827,606 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1110,227,867 - 110,310,164 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01111,309,177 - 111,391,611 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1111,370,602 - 111,390,192 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,950,784 - 111,033,081 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01110,586,908 - 110,666,100 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01111,456,408 - 111,535,475 (+)NCBIUU_Cfam_GSD_1.0
Ceacam20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934916,937,929 - 16,951,095 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367061,286,911 - 1,298,129 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEACAM20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl651,009,689 - 51,031,550 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1651,010,317 - 51,031,579 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2646,867,978 - 46,886,276 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CEACAM20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1637,962,389 - 37,999,329 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl637,962,583 - 37,991,246 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607317,519,737 - 17,603,174 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ceacam20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249071,526,226 - 1,544,429 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249071,529,332 - 1,544,354 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CEACAM20
25 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 19p13.2-q13.31(chr19:11227942-44626354)x3 copy number gain See cases [RCV000133888] Chr19:11227942..44626354 [GRCh38]
Chr19:11338618..45129651 [GRCh37]
Chr19:11199618..49821491 [NCBI36]
Chr19:19p13.2-q13.31
pathogenic
GRCh37/hg19 19q13.2-13.32(chr19:43013365-47241534)x1 copy number loss See cases [RCV000240182] Chr19:43013365..47241534 [GRCh37]
Chr19:19q13.2-13.32
pathogenic
GRCh37/hg19 19q13.31(chr19:44466919-45029206)x1 copy number loss Breast ductal adenocarcinoma [RCV000207290] Chr19:44466919..45029206 [GRCh37]
Chr19:19q13.31
uncertain significance
chr19:44501518-45322744 complex variant complex Breast ductal adenocarcinoma [RCV000207162] Chr19:44501518..45322744 [GRCh37]
Chr19:19q13.31-13.32
uncertain significance
GRCh37/hg19 19q13.31-13.32(chr19:44300416-45639540)x1 copy number loss See cases [RCV000512107] Chr19:44300416..45639540 [GRCh37]
Chr19:19q13.31-13.32
uncertain significance
NM_001102597.3(CEACAM20):c.112C>G (p.Pro38Ala) single nucleotide variant Inborn genetic diseases [RCV003254990] Chr19:44525185 [GRCh38]
Chr19:45029218 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001102597.3(CEACAM20):c.545G>T (p.Gly182Val) single nucleotide variant Inborn genetic diseases [RCV003273963] Chr19:44522840 [GRCh38]
Chr19:45026869 [GRCh37]
Chr19:19q13.31
uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888) copy number gain See cases [RCV000512296] Chr19:260912..58956888 [GRCh37]
Chr19:19p13.3-q13.43
pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888)x3 copy number gain See cases [RCV000511289] Chr19:260912..58956888 [GRCh37]
Chr19:19p13.3-q13.43
pathogenic|uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-59097160)x3 copy number gain not provided [RCV000752444] Chr19:260912..59097160 [GRCh37]
Chr19:19p13.3-q13.43
pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:68029-59110290)x3 copy number gain not provided [RCV000752439] Chr19:68029..59110290 [GRCh37]
Chr19:19p13.3-q13.43
pathogenic
GRCh37/hg19 19q11-13.33(chr19:28271106-49213832)x3 copy number gain not provided [RCV000845733] Chr19:28271106..49213832 [GRCh37]
Chr19:19q11-13.33
pathogenic
NM_001102597.3(CEACAM20):c.67G>A (p.Val23Ile) single nucleotide variant Inborn genetic diseases [RCV003240459] Chr19:44525230 [GRCh38]
Chr19:45029263 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001102597.3(CEACAM20):c.1526C>T (p.Pro509Leu) single nucleotide variant Inborn genetic diseases [RCV003272875] Chr19:44512066 [GRCh38]
Chr19:45016124 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001102597.3(CEACAM20):c.1718A>T (p.Asn573Ile) single nucleotide variant Inborn genetic diseases [RCV003292244] Chr19:44511049 [GRCh38]
Chr19:45015107 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001102597.3(CEACAM20):c.1000C>T (p.Arg334Trp) single nucleotide variant Inborn genetic diseases [RCV003274630] Chr19:44520504 [GRCh38]
Chr19:45024538 [GRCh37]
Chr19:19q13.31
uncertain significance
GRCh37/hg19 19q13.31-13.42(chr19:44738088-53621561)x3 copy number gain not provided [RCV001007050] Chr19:44738088..53621561 [GRCh37]
Chr19:19q13.31-13.42
pathogenic
NC_000019.9:g.(?_44011002)_(45213778_?)dup duplication Ethylmalonic encephalopathy [RCV003116731] Chr19:44011002..45213778 [GRCh37]
Chr19:19q13.31-13.32
uncertain significance
NM_001102597.3(CEACAM20):c.164C>T (p.Pro55Leu) single nucleotide variant Inborn genetic diseases [RCV002859902] Chr19:44525133 [GRCh38]
Chr19:45029166 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001102597.3(CEACAM20):c.395A>G (p.Asp132Gly) single nucleotide variant Inborn genetic diseases [RCV002823448] Chr19:44524063 [GRCh38]
Chr19:45028096 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001102597.3(CEACAM20):c.1060G>C (p.Glu354Gln) single nucleotide variant Inborn genetic diseases [RCV002661427] Chr19:44517195 [GRCh38]
Chr19:45021256 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001102597.3(CEACAM20):c.763A>G (p.Met255Val) single nucleotide variant Inborn genetic diseases [RCV002717516] Chr19:44520741 [GRCh38]
Chr19:45024775 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001102597.3(CEACAM20):c.337C>T (p.Arg113Cys) single nucleotide variant Inborn genetic diseases [RCV002702894] Chr19:44524121 [GRCh38]
Chr19:45028154 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001102597.3(CEACAM20):c.1003A>G (p.Ser335Gly) single nucleotide variant Inborn genetic diseases [RCV002936695] Chr19:44520501 [GRCh38]
Chr19:45024535 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001102597.3(CEACAM20):c.854T>C (p.Val285Ala) single nucleotide variant Inborn genetic diseases [RCV002668864] Chr19:44520650 [GRCh38]
Chr19:45024684 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001102597.3(CEACAM20):c.857A>G (p.Gln286Arg) single nucleotide variant Inborn genetic diseases [RCV002657541] Chr19:44520647 [GRCh38]
Chr19:45024681 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001102597.3(CEACAM20):c.427G>A (p.Ala143Thr) single nucleotide variant Inborn genetic diseases [RCV002655492] Chr19:44524031 [GRCh38]
Chr19:45028064 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001102597.3(CEACAM20):c.739G>T (p.Val247Phe) single nucleotide variant Inborn genetic diseases [RCV003190734] Chr19:44522646 [GRCh38]
Chr19:45026675 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001102597.3(CEACAM20):c.1234G>A (p.Gly412Arg) single nucleotide variant Inborn genetic diseases [RCV003357137] Chr19:44517021 [GRCh38]
Chr19:45021082 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001102597.3(CEACAM20):c.922A>T (p.Thr308Ser) single nucleotide variant Inborn genetic diseases [RCV003385424] Chr19:44520582 [GRCh38]
Chr19:45024616 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001102597.3(CEACAM20):c.38G>C (p.Gly13Ala) single nucleotide variant Inborn genetic diseases [RCV003370372] Chr19:44529472 [GRCh38]
Chr19:45033495 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001102597.3(CEACAM20):c.1157G>A (p.Arg386His) single nucleotide variant Inborn genetic diseases [RCV003350443] Chr19:44517098 [GRCh38]
Chr19:45021159 [GRCh37]
Chr19:19q13.31
likely benign
NM_001102597.3(CEACAM20):c.1586C>T (p.Pro529Leu) single nucleotide variant Inborn genetic diseases [RCV003354183] Chr19:44511662 [GRCh38]
Chr19:45015720 [GRCh37]
Chr19:19q13.31
uncertain significance
NM_001102597.3(CEACAM20):c.448G>A (p.Asp150Asn) single nucleotide variant Inborn genetic diseases [RCV003383780] Chr19:44524010 [GRCh38]
Chr19:45028043 [GRCh37]
Chr19:19q13.31
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:847
Count of miRNA genes:309
Interacting mature miRNAs:326
Transcripts:ENST00000316962, ENST00000412211, ENST00000414638, ENST00000421432, ENST00000424903, ENST00000431738, ENST00000445209, ENST00000448350, ENST00000454753
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 99 94 5 11 2
Low 79 1 37 26 54 27 11 13 9 4 472 15 4 9
Below cutoff 945 1097 978 278 419 216 2369 1057 1787 47 393 849 66 834 1562 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001102597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001102598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001102599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001102600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011526429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011526430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011526431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011526432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024451345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054319739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054319740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054319741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054319742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC069278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC138472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC245748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY358129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU008600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU008601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU008602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU008603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000611497   ⟹   ENSP00000483912
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1944,506,159 - 44,529,525 (-)Ensembl
RefSeq Acc Id: ENST00000614577   ⟹   ENSP00000482943
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1944,506,159 - 44,529,525 (-)Ensembl
RefSeq Acc Id: ENST00000614924   ⟹   ENSP00000481937
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1944,506,159 - 44,529,675 (-)Ensembl
RefSeq Acc Id: ENST00000617951   ⟹   ENSP00000483639
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1944,511,010 - 44,529,788 (-)Ensembl
RefSeq Acc Id: ENST00000620096   ⟹   ENSP00000481812
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1944,506,159 - 44,529,525 (-)Ensembl
RefSeq Acc Id: ENST00000621342   ⟹   ENSP00000480940
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1944,501,677 - 44,529,788 (-)Ensembl
RefSeq Acc Id: NM_001102597   ⟹   NP_001096067
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381944,506,159 - 44,529,675 (-)NCBI
GRCh371945,010,211 - 45,033,548 (-)RGD
Build 361949,702,051 - 49,725,388 (-)NCBI Archive
Celera1941,814,195 - 41,837,529 (-)RGD
HuRef1941,442,473 - 41,465,781 (-)RGD
CHM1_11945,012,109 - 45,035,475 (-)NCBI
T2T-CHM13v2.01947,331,670 - 47,355,129 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001102598   ⟹   NP_001096068
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381944,506,159 - 44,529,675 (-)NCBI
GRCh371945,010,211 - 45,033,548 (-)RGD
Build 361949,702,051 - 49,725,388 (-)NCBI Archive
Celera1941,814,195 - 41,837,529 (-)RGD
HuRef1941,442,473 - 41,465,781 (-)RGD
CHM1_11945,012,109 - 45,035,475 (-)NCBI
T2T-CHM13v2.01947,331,670 - 47,355,129 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001102599   ⟹   NP_001096069
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381944,506,159 - 44,529,675 (-)NCBI
GRCh371945,010,211 - 45,033,548 (-)RGD
Build 361949,702,051 - 49,725,388 (-)NCBI Archive
Celera1941,814,195 - 41,837,529 (-)RGD
HuRef1941,442,473 - 41,465,781 (-)RGD
CHM1_11945,012,109 - 45,035,475 (-)NCBI
T2T-CHM13v2.01947,331,670 - 47,355,129 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001102600   ⟹   NP_001096070
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381944,506,159 - 44,529,675 (-)NCBI
GRCh371945,010,211 - 45,033,548 (-)RGD
Build 361949,702,051 - 49,725,388 (-)NCBI Archive
Celera1941,814,195 - 41,837,529 (-)RGD
HuRef1941,442,473 - 41,465,781 (-)RGD
CHM1_11945,012,109 - 45,035,475 (-)NCBI
T2T-CHM13v2.01947,331,670 - 47,355,129 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011526429   ⟹   XP_011524731
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381944,506,159 - 44,529,675 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011526430   ⟹   XP_011524732
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381944,506,159 - 44,529,675 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011526431   ⟹   XP_011524733
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381944,511,162 - 44,529,675 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011526432   ⟹   XP_011524734
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381944,506,159 - 44,524,070 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054319739   ⟹   XP_054175714
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01947,331,670 - 47,355,129 (-)NCBI
RefSeq Acc Id: XM_054319740   ⟹   XP_054175715
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01947,331,670 - 47,355,129 (-)NCBI
RefSeq Acc Id: XM_054319741   ⟹   XP_054175716
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01947,336,656 - 47,355,129 (-)NCBI
RefSeq Acc Id: XM_054319742   ⟹   XP_054175717
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01947,331,670 - 47,349,526 (-)NCBI
RefSeq Acc Id: NP_001096067   ⟸   NM_001102597
- Peptide Label: isoform 5L precursor
- UniProtKB: A7LFK9 (UniProtKB/Swiss-Prot),   A7LFK8 (UniProtKB/Swiss-Prot),   A0A087X155 (UniProtKB/Swiss-Prot),   A0A087WZX4 (UniProtKB/Swiss-Prot),   A0A087WYH6 (UniProtKB/Swiss-Prot),   A0A087WXE1 (UniProtKB/Swiss-Prot),   A7LFL0 (UniProtKB/Swiss-Prot),   Q6UY09 (UniProtKB/Swiss-Prot),   A0A087WYM6 (UniProtKB/TrEMBL),   A7LFK7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001096068   ⟸   NM_001102598
- Peptide Label: isoform 4S precursor
- UniProtKB: Q6UY09 (UniProtKB/Swiss-Prot),   A0A087WYH6 (UniProtKB/TrEMBL),   A7LFK7 (UniProtKB/TrEMBL),   A7LFK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001096069   ⟸   NM_001102599
- Peptide Label: isoform 4L precursor
- UniProtKB: Q6UY09 (UniProtKB/Swiss-Prot),   A0A087WZX4 (UniProtKB/TrEMBL),   A7LFK7 (UniProtKB/TrEMBL),   A7LFK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001096070   ⟸   NM_001102600
- Peptide Label: isoform 5S precursor
- UniProtKB: Q6UY09 (UniProtKB/Swiss-Prot),   A0A087X155 (UniProtKB/TrEMBL),   A7LFK7 (UniProtKB/TrEMBL),   A7LFL0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011524732   ⟸   XM_011526430
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011524731   ⟸   XM_011526429
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011524734   ⟸   XM_011526432
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011524733   ⟸   XM_011526431
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSP00000481812   ⟸   ENST00000620096
RefSeq Acc Id: ENSP00000480940   ⟸   ENST00000621342
RefSeq Acc Id: ENSP00000483912   ⟸   ENST00000611497
RefSeq Acc Id: ENSP00000482943   ⟸   ENST00000614577
RefSeq Acc Id: ENSP00000481937   ⟸   ENST00000614924
RefSeq Acc Id: ENSP00000483639   ⟸   ENST00000617951
RefSeq Acc Id: XP_054175715   ⟸   XM_054319740
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054175714   ⟸   XM_054319739
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054175717   ⟸   XM_054319742
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054175716   ⟸   XM_054319741
- Peptide Label: isoform X3
Protein Domains
Ig-like C2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6UY09-F1-model_v2 AlphaFold Q6UY09 1-596 view protein structure

Promoters
RGD ID:7240325
Promoter ID:EPDNEW_H25908
Type:initiation region
Name:CEACAM20_1
Description:carcinoembryonic antigen related cell adhesion molecule 20
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381944,529,675 - 44,529,735EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:24879 AgrOrtholog
COSMIC CEACAM20 COSMIC
Ensembl Genes ENSG00000273777 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000611497 ENTREZGENE
  ENST00000611497.4 UniProtKB/Swiss-Prot
  ENST00000614577 ENTREZGENE
  ENST00000614577.4 UniProtKB/Swiss-Prot
  ENST00000614924 ENTREZGENE
  ENST00000614924.5 UniProtKB/Swiss-Prot
  ENST00000620096 ENTREZGENE
  ENST00000620096.4 UniProtKB/Swiss-Prot
  ENST00000621342.4 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
GTEx ENSG00000273777 GTEx
HGNC ID HGNC:24879 ENTREZGENE
Human Proteome Map CEACAM20 Human Proteome Map
InterPro Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
KEGG Report hsa:125931 UniProtKB/Swiss-Prot
NCBI Gene 125931 ENTREZGENE
PANTHER CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19 UniProtKB/Swiss-Prot
  CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 20 UniProtKB/Swiss-Prot
Pfam Ig_3 UniProtKB/Swiss-Prot
PharmGKB PA142672134 PharmGKB
PROSITE IG_LIKE UniProtKB/Swiss-Prot
SMART IGc2 UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
UniProt A0A087WXE1 ENTREZGENE
  A0A087WYH6 ENTREZGENE
  A0A087WYM6 ENTREZGENE
  A0A087WZX4 ENTREZGENE
  A0A087X155 ENTREZGENE
  A7LFK7 ENTREZGENE
  A7LFK8 ENTREZGENE
  A7LFK9 ENTREZGENE
  A7LFL0 ENTREZGENE
  CEA20_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A0A087WXE1 UniProtKB/Swiss-Prot
  A0A087WYH6 UniProtKB/Swiss-Prot
  A0A087WYM6 UniProtKB/Swiss-Prot
  A0A087WZX4 UniProtKB/Swiss-Prot
  A0A087X155 UniProtKB/Swiss-Prot
  A7LFK7 UniProtKB/Swiss-Prot
  A7LFK8 UniProtKB/Swiss-Prot
  A7LFK9 UniProtKB/Swiss-Prot
  A7LFL0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-27 CEACAM20  CEA cell adhesion molecule 20  CEACAM20  carcinoembryonic antigen related cell adhesion molecule 20  Symbol and/or name change 5135510 APPROVED
2016-01-19 CEACAM20  carcinoembryonic antigen related cell adhesion molecule 20    carcinoembryonic antigen-related cell adhesion molecule 20  Symbol and/or name change 5135510 APPROVED