Tnfrsf9 (TNF receptor superfamily member 9) - Rat Genome Database

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Gene: Tnfrsf9 (TNF receptor superfamily member 9) Rattus norvegicus
Analyze
Symbol: Tnfrsf9
Name: TNF receptor superfamily member 9
RGD ID: 1598208
Description: Predicted to enable cytokine binding activity; identical protein binding activity; and signaling receptor activity. Predicted to be involved in regulation of cell population proliferation. Predicted to act upstream of or within negative regulation of interleukin-10 production; negative regulation of interleukin-12 production; and regulation of immature T cell proliferation in thymus. Predicted to be located in extracellular space and plasma membrane. Predicted to be active in external side of plasma membrane. Orthologous to human TNFRSF9 (TNF receptor superfamily member 9); PARTICIPATES IN cytokine mediated signaling pathway; INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 4-1BB; LOC500590; MGC114552; similar to T-cell antigen 4-1BB precursor - mouse; tumor necrosis factor receptor superfamily member 9; tumor necrosis factor receptor superfamily, member 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25161,381,662 - 161,408,003 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5161,381,662 - 161,408,000 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5164,099,048 - 164,125,296 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.05165,915,620 - 165,941,931 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.05165,877,685 - 165,903,940 (+)NCBIRnor_WKY
Rnor_6.05168,009,245 - 168,035,813 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5168,009,393 - 168,035,810 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05171,586,822 - 171,613,568 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45168,071,159 - 168,099,501 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5159,635,368 - 159,660,862 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
8'-apo-beta,psi-caroten-8'-al  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (EXP,ISO)
anthracen-2-amine  (EXP)
aripiprazole  (ISO)
aristolochic acid  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzalkonium chloride  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-carotene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
butanal  (ISO)
calciol  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chenodeoxycholic acid  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (EXP)
copper(0)  (EXP)
coumarin  (EXP)
Cuprizon  (EXP)
cyclosporin A  (ISO)
deoxycholic acid  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diethylstilbestrol  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
epichlorohydrin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
furosemide  (EXP)
Geniposide  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
glycidol  (EXP)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
GW 4064  (ISO)
hexadecanoic acid  (ISO)
hydroquinone  (ISO)
levofloxacin  (EXP)
Licarin A  (ISO)
manganese(II) chloride  (EXP)
metformin  (ISO)
methotrexate  (ISO)
Muraglitazar  (EXP)
N-Nitrosopyrrolidine  (ISO)
O-methyleugenol  (ISO)
ozone  (ISO)
p-menthan-3-ol  (ISO)
paclitaxel  (ISO)
paracetamol  (ISO)
paraquat  (EXP,ISO)
PCB138  (ISO)
pemetrexed  (ISO)
pentanal  (ISO)
perfluorononanoic acid  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
potassium chromate  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
sarin  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
Soman  (EXP)
streptozocin  (ISO)
styrene oxide  (ISO)
Sunset Yellow FCF  (ISO)
tartrazine  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
Tesaglitazar  (EXP)
tetrachloromethane  (EXP)
titanium dioxide  (EXP,ISO)
tributylstannane  (EXP)
Tributyltin oxide  (ISO)
trichloroethene  (EXP)
triclosan  (ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
troglitazone  (EXP)
uranium atom  (ISO)
vincristine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8405064   PMID:12477932   PMID:18640726   PMID:19008373   PMID:19233196   PMID:21352817   PMID:23453329   PMID:23484089  


Genomics

Comparative Map Data
Tnfrsf9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25161,381,662 - 161,408,003 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5161,381,662 - 161,408,000 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5164,099,048 - 164,125,296 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.05165,915,620 - 165,941,931 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.05165,877,685 - 165,903,940 (+)NCBIRnor_WKY
Rnor_6.05168,009,245 - 168,035,813 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5168,009,393 - 168,035,810 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05171,586,822 - 171,613,568 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45168,071,159 - 168,099,501 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5159,635,368 - 159,660,862 (+)NCBICelera
Cytogenetic Map5q36NCBI
TNFRSF9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3817,915,871 - 7,940,839 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl17,915,871 - 7,943,165 (-)EnsemblGRCh38hg38GRCh38
GRCh3717,975,931 - 8,000,899 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3617,902,494 - 7,923,474 (-)NCBINCBI36Build 36hg18NCBI36
Build 3417,914,172 - 7,935,153NCBI
Celera17,086,974 - 7,107,941 (-)NCBICelera
Cytogenetic Map1p36.23NCBI
HuRef17,124,023 - 7,151,098 (-)NCBIHuRef
CHM1_117,963,693 - 7,990,983 (-)NCBICHM1_1
T2T-CHM13v2.017,446,742 - 7,471,701 (-)NCBIT2T-CHM13v2.0
Tnfrsf9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394151,004,612 - 151,030,561 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4150,999,019 - 151,030,559 (+)EnsemblGRCm39 Ensembl
GRCm384150,920,155 - 150,946,104 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4150,914,562 - 150,946,102 (+)EnsemblGRCm38mm10GRCm38
MGSCv374150,294,264 - 150,320,211 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364149,769,106 - 149,789,004 (+)NCBIMGSCv36mm8
Celera4153,197,328 - 153,223,255 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map481.52NCBI
Tnfrsf9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554864,989,582 - 5,010,213 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554864,986,245 - 5,009,437 (+)NCBIChiLan1.0ChiLan1.0
TNFRSF9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.117,942,678 - 7,949,326 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl17,942,641 - 7,949,326 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v016,681,954 - 6,703,813 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TNFRSF9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1561,548,972 - 61,562,019 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl561,551,405 - 61,560,667 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha561,557,753 - 61,570,789 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0561,765,323 - 61,778,355 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl561,767,778 - 61,777,041 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1561,764,591 - 61,777,621 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0561,629,405 - 61,642,432 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0562,032,740 - 62,045,771 (-)NCBIUU_Cfam_GSD_1.0
Tnfrsf9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505831,913,208 - 31,934,402 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366232,398,446 - 2,407,990 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFRSF9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl668,590,360 - 68,609,695 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1668,590,562 - 68,609,784 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2663,053,826 - 63,072,324 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TNFRSF9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120123,808,289 - 123,839,957 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20123,820,342 - 123,838,987 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605427,842,800 - 27,874,576 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfrsf9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248183,925,626 - 3,934,046 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248183,924,883 - 3,934,343 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:100
Count of miRNA genes:80
Interacting mature miRNAs:86
Transcripts:ENSRNOT00000055506
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 19 13 9 13
Low 2 17 29 22 10 22 3 39 35 41 11
Below cutoff 1 25 9 6 6 8 8 35 8

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000055506   ⟹   ENSRNOP00000052371
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5161,381,662 - 161,408,000 (+)Ensembl
Rnor_6.0 Ensembl5168,009,393 - 168,035,810 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000077202   ⟹   ENSRNOP00000074761
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5161,391,563 - 161,407,951 (+)Ensembl
Rnor_6.0 Ensembl5168,019,058 - 168,035,792 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118543   ⟹   ENSRNOP00000083115
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5161,381,662 - 161,407,824 (+)Ensembl
RefSeq Acc Id: NM_001025773   ⟹   NP_001020944
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,381,662 - 161,408,003 (+)NCBI
Rnor_6.05168,009,393 - 168,035,813 (+)NCBI
Rnor_5.05171,586,822 - 171,613,568 (+)NCBI
RGSC_v3.45168,071,159 - 168,099,501 (+)RGD
Celera5159,635,368 - 159,660,862 (+)RGD
Sequence:
RefSeq Acc Id: XM_006239472   ⟹   XP_006239534
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,391,209 - 161,408,003 (+)NCBI
Rnor_6.05168,017,537 - 168,035,813 (+)NCBI
Rnor_5.05171,586,822 - 171,613,568 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764282   ⟹   XP_008762504
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,382,147 - 161,408,003 (+)NCBI
Rnor_6.05168,009,804 - 168,035,813 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039110647   ⟹   XP_038966575
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,391,206 - 161,408,003 (+)NCBI
RefSeq Acc Id: XM_039110648   ⟹   XP_038966576
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,390,387 - 161,408,003 (+)NCBI
RefSeq Acc Id: XM_039110649   ⟹   XP_038966577
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,390,405 - 161,407,865 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001020944   ⟸   NM_001025773
- Peptide Label: precursor
- UniProtKB: Q4V895 (UniProtKB/TrEMBL),   D4AD93 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239534   ⟸   XM_006239472
- Peptide Label: isoform X1
- UniProtKB: Q4V895 (UniProtKB/TrEMBL),   D4AD93 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762504   ⟸   XM_008764282
- Peptide Label: isoform X1
- UniProtKB: Q4V895 (UniProtKB/TrEMBL),   D4AD93 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074761   ⟸   ENSRNOT00000077202
RefSeq Acc Id: ENSRNOP00000052371   ⟸   ENSRNOT00000055506
RefSeq Acc Id: XP_038966576   ⟸   XM_039110648
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038966577   ⟸   XM_039110649
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038966575   ⟸   XM_039110647
- Peptide Label: isoform X1
- UniProtKB: D4AD93 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000083115   ⟸   ENSRNOT00000118543
Protein Domains
TNFR-Cys

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4V895-F1-model_v2 AlphaFold Q4V895 1-258 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694286
Promoter ID:EPDNEW_R4811
Type:multiple initiation site
Name:Tnfrsf9_1
Description:TNF receptor superfamily member 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05168,019,324 - 168,019,384EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1598208 AgrOrtholog
BioCyc Gene G2FUF-39051 BioCyc
Ensembl Genes ENSRNOG00000036942 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000052371 ENTREZGENE
  ENSRNOP00000052371.3 UniProtKB/TrEMBL
  ENSRNOP00000074761 ENTREZGENE
  ENSRNOP00000074761.2 UniProtKB/TrEMBL
  ENSRNOP00000083115.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000055506 ENTREZGENE
  ENSRNOT00000055506.5 UniProtKB/TrEMBL
  ENSRNOT00000077202 ENTREZGENE
  ENSRNOT00000077202.2 UniProtKB/TrEMBL
  ENSRNOT00000118543.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7459228 IMAGE-MGC_LOAD
InterPro TNFR_9 UniProtKB/TrEMBL
  TNFR_Cys_rich_reg UniProtKB/TrEMBL
  TNFRSF9_N UniProtKB/TrEMBL
KEGG Report rno:500590 UniProtKB/TrEMBL
MGC_CLONE MGC:114552 IMAGE-MGC_LOAD
NCBI Gene 500590 ENTREZGENE
PANTHER PTHR47139:SF1 UniProtKB/TrEMBL
Pfam TNFR_c6 UniProtKB/TrEMBL
PhenoGen Tnfrsf9 PhenoGen
PRINTS TNFACTORR9 UniProtKB/TrEMBL
PROSITE TNFR_NGFR_2 UniProtKB/TrEMBL
SMART TNFR UniProtKB/TrEMBL
UniProt A0A0G2K8W4_RAT UniProtKB/TrEMBL
  A0A8I5ZWJ3_RAT UniProtKB/TrEMBL
  D4AD93 ENTREZGENE
  Q4V895 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary D4AD93 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-05 Tnfrsf9  TNF receptor superfamily member 9  Tnfrsf9  tumor necrosis factor receptor superfamily, member 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Tnfrsf9  tumor necrosis factor receptor superfamily, member 9  LOC500590  similar to T-cell antigen 4-1BB precursor - mouse  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC500590  similar to T-cell antigen 4-1BB precursor - mouse      Symbol and Name status set to provisional 70820 PROVISIONAL